Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	412,372	A→G	I37T (ATT→ACT)	araJ ←	putative transport protein AraJ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	412,372	0	A	G	100.0%	208.9 / NA	60	I37T (ATT→ACT)	araJ	putative transport protein AraJ
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (35/25);  total (35/25)

TTGCCAATGACGCACAACGCCACCAGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCAAAGATAAAATGACTTTTTTCATACCACCATCACAACCACCAGAACGG  >  NC_000913/412237‑412506                                                                                                                                        |                                                                                                                                       ttGCCAATGACGCACAACGCCACCAGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGa                                                                                                                                    <  2:194546/140‑1 (MQ=255)         gACGCACAACGCCACCAGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTa                                                                                                                            <  2:940138/140‑1 (MQ=255)                    ccaccaGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGcc                                                                                                                 <  1:434842/140‑1 (MQ=255)                     caccaGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTa                                                                                                                       <  1:578384/133‑1 (MQ=255)                     caccaGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTa                                                                                                                       >  2:578384/1‑133 (MQ=255)                      accaGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAg                                                                                                               >  2:223692/1‑140 (MQ=255)                               aacaaGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAg                                                                                                      <  1:42499/140‑1 (MQ=255)                                        tGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCAt                                                                                             <  1:223692/140‑1 (MQ=255)                                             gagtgagtAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGc                                                                                        >  2:458926/1‑140 (MQ=255)                                              agtgagtAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGcc                                                                                       >  2:874694/1‑140 (MQ=255)                                               gtgagtAGTGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCa                                                                                      >  2:534184/1‑140 (MQ=255)                                               gtgagtAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCa                                                                                      >  2:735356/1‑140 (MQ=255)                                                tgagtAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCTCCAGCTCCGTGAg                                                                                                      >  2:764404/1‑123 (MQ=255)                                                tgagtAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAg                                                                                                      <  1:764404/123‑1 (MQ=255)                                                  agtAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAAt                                                                                   >  1:894499/1‑140 (MQ=255)                                                  agtAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAAt                                                                                   >  2:451838/1‑140 (MQ=255)                                                  agtAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAAt                                                                                   >  2:183721/1‑140 (MQ=255)                                                    tAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTc                                                                                 >  2:878022/1‑140 (MQ=255)                                                       cGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGc                                                                              <  1:735356/140‑1 (MQ=255)                                                       cGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGc                                                                              >  2:49802/1‑140 (MQ=255)                                                             gAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATccc                                                                        >  1:80249/1‑140 (MQ=255)                                                                  gagTGCGATGATTGGCGCACCGACCACCCCCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCcaaaac                                                                   <  1:977401/140‑1 (MQ=255)                                                                    gTGCGATGATTGGCGCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGc                                                                              <  2:139318/127‑1 (MQ=255)                                                                    gTGCGATGATTGGCGCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGc                                                                              >  1:139318/1‑127 (MQ=255)                                                                       cGATGATTGGCGCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGcc                                                                             <  2:423977/125‑1 (MQ=255)                                                                       cGATGATTGGCGCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGcc                                                                             >  1:423977/1‑125 (MQ=255)                                                                       cGATGATTGGCGCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATc                                                                          >  1:15717/1‑128 (MQ=255)                                                                       cGATGATTGGCGCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAAGAGTCGAAATTCCTACGTTATGCGCCAGCACCGTAAGCACGCCCATAATGCCAAATTCGGCCATc                                                                          <  2:15717/128‑1 (MQ=255)                                                                                    aCCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCa                                                 <  1:878022/140‑1 (MQ=255)                                                                                      cGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCaaa                                               >  2:327607/1‑140 (MQ=255)                                                                                      cGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCaaa                                               >  2:369822/1‑140 (MQ=255)                                                                                       gACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCa                                                 >  2:614471/1‑137 (MQ=255)                                                                                       gACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCa                                                 <  1:614471/137‑1 (MQ=255)                                                                                        accaccaccCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCa                                                       >  1:433361/1‑130 (MQ=255)                                                                                        accaccaccCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCa                                                       <  2:433361/130‑1 (MQ=255)                                                                                                  ccAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCAAAGATAAAATGACt                                   <  2:894499/140‑1 (MQ=255)                                                                                                    aGTGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCAAAGATAAAATGACttt                                 >  2:609507/1‑140 (MQ=255)                                                                                                      tGCATAATACGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCAAAGATAAAATGACttttt                               <  1:534184/140‑1 (MQ=255)                                                                                                         ataataCGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCAAAGATAAAATGACTTTTTTCa                            <  1:966214/140‑1 (MQ=255)                                                                                                          taataCGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCAAAGATAAAATGACtttttt                              <  2:991963/137‑1 (MQ=255)                                                                                                          taataCGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCAAAGATAAAATGACtttttt                              >  1:991963/1‑137 (MQ=255)                                                                                                          taataCGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCAAAGATAAAATGACTTTTTTCAt                           >  2:741908/1‑140 (MQ=255)                                                                                                          taataCGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCAAAGATAAAATGACTTTTTTCAt                           >  1:61634/1‑140 (MQ=255)                                                                                                              aCGAGATCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCAAAGATAAAATGACTTTTTTCATacca                       <  1:327901/140‑1 (MQ=255)                                                                                                                gagaTCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCAAAGATAAAATGACTTTTTTCATaccacc                     >  2:472024/1‑140 (MQ=255)                                                                                                                gagaTCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCAAAGATAAAATGACTTTTTTCATaccacc                     >  2:614706/1‑140 (MQ=255)                                                                                                                gagaTCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCAAAGATAAAATGACTTTTTTCATaccacc                     >  2:197393/1‑140 (MQ=255)                                                                                                                  gaTCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCAAAGGTAAAATGACTTTTTTCATACCACCAt                   >  1:765246/1‑140 (MQ=255)                                                                                                                  gaTCATATGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCAAAGATAAAATGACTTTTTTCATACCACCAt                   >  1:191118/1‑140 (MQ=255)                                                                                                                      atatGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCAAAGATAAAATGACTTTTTTCATACCACCATcaca               <  1:741908/140‑1 (MQ=255)                                                                                                                       tatGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCAAAGATAAAATGACTTTTTTCATACCACCATCACaa              >  1:712771/1‑140 (MQ=255)                                                                                                                       tatGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCAAAGATAAAATGACTTTTTTCATACCACCATCACaa              >  2:920166/1‑140 (MQ=255)                                                                                                                       tatGCCCGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCAAAGATAAAATGACTTTTTTCATACCACCATCACaa              >  1:419653/1‑140 (MQ=255)                                                                                                                            ccGGCGGCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCAAAGATAAAATGACTTTTTTCATACCACCATCACAaccacc         >  1:650532/1‑140 (MQ=255)                                                                                                                             cggcggCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCAAAGATAAAATGACTTTTTTCATACCACCATCACAAccacca        >  2:581195/1‑140 (MQ=255)                                                                                                                             cggcggCAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCAAAGATAAAATGACTTTTTTCATACCACCATCACAAccacca        <  2:858136/140‑1 (MQ=255)                                                                                                                              ggcggcAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCAAAGATAAAATGACTTTTTTCATACCACCATCACAACCACCAg       >  2:758753/1‑140 (MQ=255)                                                                                                                               gcggcAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCAAAGATAAAATGACTTTTTTCATACCACCATCACAACCACCAGa      <  2:765246/140‑1 (MQ=255)                                                                                                                                 ggcAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCAAAGATAAAATGACTTTTTTCATACCACCATCACAACCACCAGAAc    <  2:650532/140‑1 (MQ=255)                                                                                                                                   cAGGAGTCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCAAAGATAAAATGACTTTTTTCATACCACCATCACAACCACCAGAACgg  <  1:920166/140‑1 (MQ=255)                                                                                                                                        |                                                                                                                                       TTGCCAATGACGCACAACGCCACCAGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCAAAGATAAAATGACTTTTTTCATACCACCATCACAACCACCAGAACGG  >  NC_000913/412237‑412506

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑