| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 63,248 | C→T | G6D (GGT→GAT) | rapA ← | RNA polymerase‑binding ATPase and RNAP recycling factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 63,248 | 0 | C | T | 97.8% | 311.1 / ‑2.2 | 90 | G6D (GGT→GAT) | rapA | RNA polymerase‑binding ATPase and RNAP recycling factor |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base T (41/47); total (42/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.29e-01 | |||||||||||
GGGTCACGGGGGAATCACTGCGTGCGTACAGACGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑C‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGTGCTTATGAGGTAGTGGTGTTATTCAGGTCCAGGAATGGAAAGGGCGCTATGGTACTGGATGG > NC_000913/63111‑63377 | gggTCACGGGGGAATCACTGCGTGCGTACAGACGGTTTTCTCCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑Ca < 2:179460/140‑1 (MQ=255)gggTCACGGGGGAATCACTGCGTGCGTACAGACGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑Ca > 1:32618/1‑140 (MQ=255) ggTCACGGGGGAATCACTGCGTGCGTACAGACGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑Caa > 1:123441/1‑140 (MQ=255) tCACGGGGGAATCACTGCGTGCGTACAGACGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAgt > 2:577434/1‑140 (MQ=255) aCGGGGGAATCACTGCGTGCGTACAGACGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAgtgt > 2:1040972/1‑140 (MQ=255) aCGGGGGAATCACTGCGTGCGTACAGACGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAgtgt > 1:694120/1‑140 (MQ=255) aCGGGGGAATCACTGCGTGCGTACAGACGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAgtgt > 2:708455/1‑140 (MQ=255) cGGGGGAATCACTGCGTGCGTACAGACGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTa < 2:693597/140‑1 (MQ=255) gggggAATCACTGCGTGCGTACAGACGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTaa < 2:75608/140‑1 (MQ=255) gggggAATCACTGCGTGCGTACAGACGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTaa < 2:32618/140‑1 (MQ=255) gggggAATCACTGCGTGCGTACAGACGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTaa < 1:331067/140‑1 (MQ=255) ggggAATCACTGCGTGCGTACAGACGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTaaa < 1:575194/140‑1 (MQ=255) ggggAATCACTGCGTGCGTACAGACGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTaaa < 1:577434/140‑1 (MQ=255) aaTCACTGCGTGCGTACAGACGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGc > 1:567741/1‑140 (MQ=255) aaTCACTGCGTGCGTACAGACGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGc > 2:2379/1‑140 (MQ=255) aCTGCGTGCGTACAGACGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCatat < 1:477422/140‑1 (MQ=255) aCTGCGTGCGTACAGACGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCatat < 1:625401/140‑1 (MQ=255) cTGCGTGCGTACAGACGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATAtg > 2:194461/1‑140 (MQ=255) gcgtgcgtACAGACGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTaaa > 1:616332/1‑129 (MQ=255) gcgtgcgtACAGACGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTaaa < 2:616332/129‑1 (MQ=255) cgtgcgtACAGACGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATgtgt > 2:478941/1‑140 (MQ=255) gtgcgtACAGACGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTaaaa < 1:821630/128‑1 (MQ=255) gtgcgtACAGACGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTaaaa > 2:821630/1‑128 (MQ=255) gtgcgtACAGACGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTa < 1:717573/125‑1 (MQ=255) gtgcgtACAGACGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTa > 2:717573/1‑125 (MQ=255) gtgcgtACAGACGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGtt < 1:645422/140‑1 (MQ=255) cgtACAGACGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGATCAGATCAAGTGTAAAAGGCATAtgtg > 2:924785/1‑140 (MQ=255) tACAGACGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGATCAGATCAAGTGTAAAAGGCATATGTGtt < 1:924785/140‑1 (MQ=255) tACAGACGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCg > 1:543038/1‑137 (MQ=255) tACAGACGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCg < 2:543038/137‑1 (MQ=255) tACAGACGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCg < 2:189862/137‑1 (MQ=255) tACAGACGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCg > 1:189862/1‑137 (MQ=255) tACAGACGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGct < 1:993069/140‑1 (MQ=255) tACAGACGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGct > 2:814356/1‑140 (MQ=255) gACGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCtat > 2:556489/1‑140 (MQ=255) cGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTatat > 1:478242/1‑140 (MQ=255) ttttCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGtt > 1:166603/1‑126 (MQ=255) ttttCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGtt < 2:166603/126‑1 (MQ=255) tttCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCttt > 2:425543/1‑140 (MQ=255) cACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTTGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAAt < 2:1079095/140‑1 (MQ=255) cAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGc < 1:556489/140‑1 (MQ=255) tAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAgg < 2:567741/140‑1 (MQ=255) tAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAg < 1:697177/139‑1 (MQ=255) tAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAg > 2:697177/1‑139 (MQ=255) gATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCa > 2:79649/1‑140 (MQ=255) gATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCa < 1:708455/140‑1 (MQ=255) ggAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATaa < 1:695169/140‑1 (MQ=255) agtGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTa > 1:310500/1‑140 (MQ=255) gtGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTAc > 1:86013/1‑140 (MQ=255) tGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTAcc < 2:310500/140‑1 (MQ=255) tGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTAcc < 1:814356/140‑1 (MQ=255) aGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTGATTGCAGGCAATAACCACCCGCTACCGTGc < 2:387937/140‑1 (MQ=255) aGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGTGc < 1:2379/140‑1 (MQ=255) aGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGTGc < 2:136853/140‑1 (MQ=255) aGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGTGc < 1:79649/140‑1 (MQ=255) gTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTAcc < 2:712610/135‑1 (MQ=255) gTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTAcc > 1:712610/1‑135 (MQ=255) tCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGTGCTTa < 1:1020416/140‑1 (MQ=255) tCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGTGCTTa < 1:91764/140‑1 (MQ=255) gcgcATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGTGCTTATg < 1:478941/140‑1 (MQ=255) cgcATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGTGCTTATGa > 1:409754/1‑140 (MQ=255) ccACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGTGCTTATGAGGTAg < 2:123441/140‑1 (MQ=255) ccACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGTGCTTATGAGGTAg < 2:783830/140‑1 (MQ=255) ccACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGTGCTTATGAGGTAg < 2:409754/140‑1 (MQ=255) cACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGt > 2:757978/1‑126 (MQ=255) cACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGt < 1:757978/126‑1 (MQ=255) cgACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGTGCTTATGAGGTAg > 1:270085/1‑134 (MQ=255) cgACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGTGCTTATGAGGTAg < 2:903106/134‑1 (MQ=255) cgACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGTGCTTATGAGGTAg < 2:270085/134‑1 (MQ=255) cgACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGTGCTTATGAGGTAg > 1:903106/1‑134 (MQ=255) cgACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGTGCTTATGAGGTAGTGgtgt > 2:655841/1‑140 (MQ=255) aCGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGTGCTTATGAGGTAGTGGTGTTATTc < 1:425543/140‑1 (MQ=255) cGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGTGCTTATGAGGTAGTGGTGTTATTCa > 1:293832/1‑140 (MQ=255) gTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGTGCTTATGAGGTAGTGGTGTTATTCAgg > 1:1040185/1‑140 (MQ=255) gTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGTGCTTATGAGGTAGTGGTGTTATTCAgg > 1:978455/1‑140 (MQ=255) ccAAGTCCCAATTCGCTTTCTGTGTCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGTGCTTATGAGGTAGTGGTGTTATTCAGGTcc > 1:930417/1‑140 (MQ=255) cAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGTGCTTATGAGGTAGTGGTGTTATTCAGGTCCa < 2:643162/133‑1 (MQ=255) cAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGTGCTTATGAGGTAGTGGTGTTATTCAGGTCCa > 1:643162/1‑133 (MQ=255) tCGCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGTGCTTATGAGGTAGTGGTGTTATTCAGGTCCAGGAATGGAAAg < 2:478242/140‑1 (MQ=255) gCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGTGCTTATGAGGTAGTGGTGTTATTCAGGTCCAGGAATGGAAAggg < 1:194461/140‑1 (MQ=255) gCTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGTGCTTATGAGGTAGTGGTGTTATTCAGGTCCAGGAATGGAAAggg < 1:593984/140‑1 (MQ=255) cTTTCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGTGCTTATGAGGTAGTGGTGTTATTCAGGTCCAGGAATGGAAAGGgc > 2:875783/1‑140 (MQ=255) tttCTGTATCGCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGTGCTTATGAGGTAGTGGTGTTATTCAGGTCCAGGAATGGAAAGGgcg < 1:1040972/140‑1 (MQ=255) gCTGATCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGTGCTTATGAGGTAGTGGTGTTATTCAGGTCCAGGAATGGAAAGGGCGCTATGGTACt > 1:322976/1‑140 (MQ=255) aTCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGTGCTTATGAGGTAGTGGTGTTATTCAGGTCCAGGAATGGAAAGGGCGCt < 2:498164/128‑1 (MQ=255) aTCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGTGCTTATGAGGTAGTGGTGTTATTCAGGTCCAGGAATGGAAAGGGCGCt > 1:498164/1‑128 (MQ=255) aTCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGTGCTTATGAGGTAGTGGTGTTATTCAGGTCCAGGAATGGAAAGGGCGCTa < 1:850964/129‑1 (MQ=255) aTCCAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGTGCTTATGAGGTAGTGGTGTTATTCAGGTCCAGGAATGGAAAGGGCGCTa > 2:850964/1‑129 (MQ=255) ccAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGTGCTTATGAGGTAGTGGTGTTATTCAGGTCCAGGAATGGAAAGGGCGCTATGGTACTGGATgg > 2:1035149/1‑140 (MQ=255) ccAGCGTTGA‑T‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGTGCTTATGAGGTAGTGGTGTTATTCAGGTCCAGGAATGGAAAGGGCGCTATGGTACTGGATgg > 1:608089/1‑140 (MQ=255) | GGGTCACGGGGGAATCACTGCGTGCGTACAGACGGTTTTCACCAGTAGATGGGAAAAGTAAAGTGACAGTTCGCGCATCCACCGCGACAACGGTTCCAAGTCCCAATTCGCTTTCTGTATCGCTGATCCAGCGTTGA‑C‑‑‑‑CAAGTGTAAAAGGCATATGTGTTCGGCTCTATATCTTTAATTGCAGGCAATAACCACCCGCTACCGTGCTTATGAGGTAGTGGTGTTATTCAGGTCCAGGAATGGAAAGGGCGCTATGGTACTGGATGG > NC_000913/63111‑63377 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |