Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,756,161 G→A M1M (ATG→ATA) † intA → CP4‑57 prophage; integrase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,756,1610GA100.0% 144.8 / NA 42M1M (ATG→ATA) †intACP4‑57 prophage; integrase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (26/16);  total (26/16)

CGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTGGCAGTAAGCTTTGGCAATTCCGT  >  NC_000913/2756024‑2756296
                                                                                                                                         |                                                                                                                                       
cGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATAGc                                                                                                                                       >  1:8009/1‑140 (MQ=255)
            tgCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATAGCAAGAAAAACCaa                                                                                                                           <  2:818484/140‑1 (MQ=255)
                 tCAATTTGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATAGCAAGAAAAACCAAGCCGt                                                                                                                      >  2:882844/1‑140 (MQ=255)
                  cAATTTGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATAGCAAGAAAAACCAAGCCGtt                                                                                                                     <  2:8009/140‑1 (MQ=255)
                                   tCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCa                                                                                                    >  1:200926/1‑140 (MQ=255)
                                             aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCaa                                                                                          >  1:668767/1‑140 (MQ=255)
                                                 aTTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCGGGGAGACTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCt                                                                                      >  2:834810/1‑140 (MQ=255)
                                                           aaCCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGa                                                                                 >  2:587792/1‑135 (MQ=255)
                                                           aaCCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGa                                                                                 <  1:587792/135‑1 (MQ=255)
                                                               ttttAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTa                                                                        <  2:809558/140‑1 (MQ=255)
                                                                tttAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTAc                                                                       <  2:668767/140‑1 (MQ=255)
                                                                         aTTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTAt                                                              >  1:727368/1‑140 (MQ=255)
                                                                          ttGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCttt                                                                >  2:725962/1‑137 (MQ=255)
                                                                          ttGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCttt                                                                <  1:725962/137‑1 (MQ=255)
                                                                          ttGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTAtg                                                             >  1:5419/1‑140 (MQ=255)
                                                                          ttGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTAtg                                                             >  1:828066/1‑140 (MQ=255)
                                                                                ggCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTAtgacggtg                                                       >  2:491347/1‑140 (MQ=255)
                                                                                 gCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTAtgacggtga                                                      <  1:882844/140‑1 (MQ=255)
                                                                                 gCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTAtgacggtga                                                      <  2:163009/140‑1 (MQ=255)
                                                                                     aaCGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTAtgacggtga                                                      <  1:498446/136‑1 (MQ=255)
                                                                                     aaCGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTAtgacggtga                                                      >  2:498446/1‑136 (MQ=255)
                                                                                     aaCGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACggg                                                  >  2:705356/1‑140 (MQ=255)
                                                                                         aaaaGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTa                                              <  1:366209/140‑1 (MQ=255)
                                                                                           aaGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTAct                                            >  2:639309/1‑140 (MQ=255)
                                                                                            aGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATATGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTActc                                           >  1:301753/1‑140 (MQ=255)
                                                                                             gCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTActct                                          >  2:986728/1‑140 (MQ=255)
                                                                                                        tACGTTGGGCCTAAACGCAGGGAGACTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGt                               >  2:981827/1‑140 (MQ=255)
                                                                                                        tACGTTGGGCCTAAACGCAGGGAGACTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGt                               >  2:1030283/1‑140 (MQ=255)
                                                                                                            ttGGGCCTAAACGCAGGGAGACTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAg                           <  1:232744/140‑1 (MQ=255)
                                                                                                              gggCCTAAACGCAGGGAGACTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTg                         >  1:371335/1‑140 (MQ=255)
                                                                                                               ggCCTAAACGCAGGGAGACTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTgg                        >  1:787720/1‑140 (MQ=255)
                                                                                                               ggCCTAAACGCAGGGAGACTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTgc                        >  1:924358/1‑139 (MQ=255)
                                                                                                                gCCTAAACGCAGGGAGACTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTGGc                       >  2:318363/1‑140 (MQ=255)
                                                                                                                       cGCAGGGAGACTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTGGCAGTAAGc                <  1:986728/140‑1 (MQ=255)
                                                                                                                       cGCAGGGAGACTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTGGCAGTAAGc                <  1:639309/140‑1 (MQ=255)
                                                                                                                         cAGGGAGACTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTGGCAGTAAGCtt              >  2:850010/1‑140 (MQ=255)
                                                                                                                            ggAGACTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTGGCAGTAAGCTTTgg           <  2:354514/140‑1 (MQ=255)
                                                                                                                             gagaCTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTGGCAGTaa                  <  2:436067/132‑1 (MQ=255)
                                                                                                                             gagaCTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTGGCAGTaa                  >  1:436067/1‑132 (MQ=255)
                                                                                                                              agaCTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTGGCAGTAAGCTTTGGCa         <  2:74766/140‑1 (MQ=255)
                                                                                                                               gaCTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTGGCAGTAAGCTTTGGCaa        >  2:667849/1‑140 (MQ=255)
                                                                                                                                aCTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTGGCAGTAAGCTTTGGCAAt       <  1:981827/140‑1 (MQ=255)
                                                                                                                                 cTCCCCATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTGGCAGTAAGCTTTGGCAAtt      >  1:792103/1‑140 (MQ=255)
                                                                                                                                     ccATAGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTGGCAGTAAGCTTTGGCAATTCCGt  <  1:318363/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                       
CGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTGGCAGTAAGCTTTGGCAATTCCGT  >  NC_000913/2756024‑2756296

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑