Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,779,116	G→A	P1204L (CCA→CTA)	ypjA ←	adhesin‑like autotransporter YpjA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,779,116	0	G	A	100.0%	241.0 / NA	67	P1204L (CCA→CTA)	ypjA	adhesin‑like autotransporter YpjA
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (30/37);  total (30/37)

ATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGCCATATTGAGTACGGCTGCCGTAGAAGGCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTGGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAAGA  >  NC_000913/2778981‑2779247                                                                                                                                        |                                                                                                                                    aTACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGCCATATTGAGTACGGCTGCCGTAGAAGGCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTc                                                                                                                                 <  1:443575/140‑1 (MQ=255)  tACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGCCATATTGAGTACGGCTGCCTTAGAAGGCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCt                                                                                                                                <  1:297709/140‑1 (MQ=255)       tttAGCTCAGCATCAAATACCAACGGTAATGTTGCTGCCATATTGAGTACGGCTGCCGTAGAAGGCGTGATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCtt                                                                                                                           >  1:1024826/1‑140 (MQ=255)         tAGCTCAGCATCAAATACCAACGGTAATGTTGCTGCCATATTGAGTACGGCTGCCGTAGAAGGCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTg                                                                                                                         >  1:439494/1‑140 (MQ=255)           gCTCAGCATCAAATACCAACGGTAATGTTGCTGCCATATTGAGTACGGCTGCCGTAGAAGGCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGa                                                                                                                       <  2:439494/140‑1 (MQ=255)            cTCAGCATCTAATACCAACGGTAATGTTGCTGCCATATTGAGTACGGCTGCCGTAGAAGGCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGAt                                                                                                                      >  1:272691/1‑140 (MQ=255)            cTCAGCATCAAATACCAACGGTAATGTTGCTGCCATATTGAGTACGGCTGCCGTAGAAGGCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGAt                                                                                                                      <  1:941978/140‑1 (MQ=255)            cTCAGCATCAAATACCAACGGTAATGTTGCTGCCATATTGAGTACGGCTGCCGTAGAAGGCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGAt                                                                                                                      >  2:438737/1‑140 (MQ=255)                 cATCAAATACCAACGGTAATGTTGCTGCCATATTGAGTACGGCTGCCGTAGAAGGCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGt                                                                                                                 >  1:48542/1‑140 (MQ=255)                        tACCAACGGTAATGTTGCTGCCATATTGAGTACGGCTGCCGTAGAAGGCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGt                                                                                                          <  1:914097/140‑1 (MQ=255)                           cAACGGTAATGTTGCTGCCATATTGAGTACGGCTGCCGTAGAAGGCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTg                                                                                                       >  2:556503/1‑140 (MQ=255)                             aCGGTAATGTTGCTGCCATATTGAGTACGGCTGCCGTAGAAGGCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGc                                                                                                     >  1:686701/1‑140 (MQ=255)                               ggTAATGTTGCTGCCATATTGAGTACGGCTGCCGTAGAAGGCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCtt                                                                                                   <  1:438737/140‑1 (MQ=255)                               ggTAATGTTGCTGCCATATTGAGTACGGCTGCCGTAGAAGGCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCtt                                                                                                   <  2:272691/140‑1 (MQ=255)                                gTAATGTTGCTGCCATATTGAGTACGGCTGCCGTAGAAGGCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCttt                                                                                                  >  1:250736/1‑140 (MQ=255)                                    tGTTGCTGCCATATTGAGTACGGCTGCCGTAGAAGGCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGAt                                                                                              <  1:514738/140‑1 (MQ=255)                                    tGTTGCTGCCATATTGAGTACGGCTGCCGTAGAAGGCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGAt                                                                                              <  2:39080/140‑1 (MQ=255)                                         ctgcCATATTGAGTACGGCTGCCGTAGAAGGCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTggg                                                                                         >  1:307626/1‑140 (MQ=255)                                         ctgcCATATTGAGTACGGCTGCCGTAGAAGGCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTggg                                                                                         >  2:261412/1‑140 (MQ=255)                                         ctgcCATATTGAGTACGGCTGCCGTAGAAGGCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTggg                                                                                         >  1:1042271/1‑140 (MQ=255)                                         ctgcCATATTGAGTACGGCTGCCGTAGAAGGCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTggg                                                                                         >  1:216044/1‑140 (MQ=255)                                          tgcCATATTGAGTACGGCTGCCGTAGAAGGCGTGATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGa                                                                                        <  2:1024826/140‑1 (MQ=255)                                          tgcCATATTGAGTACGGCTGCCGTAGAAGGCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGAttt                                                                                            >  1:403858/1‑136 (MQ=255)                                          tgcCATATTGAGTACGGCTGCCGTAGAAGGCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGAttt                                                                                            <  2:403858/136‑1 (MQ=255)                                          tgcCATATTGAGTACGGCTGCCGTAGAAGGCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGa                                                                                        <  2:323474/140‑1 (MQ=255)                                          tgcCATATTGAGTACGGCTGCCGTAGAAGGCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGa                                                                                        <  1:489897/140‑1 (MQ=255)                                          tgcCATATTGAGTACGGCTGCCGTAGAAGGCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGa                                                                                        <  1:194786/140‑1 (MQ=255)                                           gcCATATTGAGTACGGCTGCCGTAGAAGGCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGAt                                                                                       <  2:488197/140‑1 (MQ=255)                                                atTGAGTACGGCTGCCGTAGAAGGCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGt                                                                                  >  1:105569/1‑140 (MQ=255)                                                       aCGGCTGCCGTAGAAGGCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCgggtt                                                                           <  2:307626/140‑1 (MQ=255)                                                           cTGCCGTAGAAGGCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCgggt                                                                            <  2:1029158/135‑1 (MQ=255)                                                           cTGCCGTAGAAGGCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCgggt                                                                            >  1:1029158/1‑135 (MQ=255)                                                              ccGTAGAAGGCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTg                                                                    >  1:66408/1‑140 (MQ=255)                                                              ccGTAGAAGGCGTAATGAGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTg                                                                    >  1:1046318/1‑140 (MQ=255)                                                               cGTAGAAGGCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGa                                                                   <  2:425403/140‑1 (MQ=255)                                                                    aaGGCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGAcatca                                                              <  2:66408/140‑1 (MQ=255)                                                                      ggCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGAcatcat                                                             >  1:146088/1‑139 (MQ=255)                                                                      ggCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGAcatcat                                                             <  2:146088/139‑1 (MQ=255)                                                                        cGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCgggt                                                                            >  2:27590/1‑122 (MQ=255)                                                                        cGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCgggt                                                                            <  1:27590/122‑1 (MQ=255)                                                                        cGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGa                                                                   <  1:283687/131‑1 (MQ=255)                                                                        cGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGa                                                                   >  2:283687/1‑131 (MQ=255)                                                                        cGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTgg                                                          >  1:27027/1‑140 (MQ=255)                                                                        cGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTgg                                                          >  1:342435/1‑140 (MQ=255)                                                                         gTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGt                                                         <  1:261412/140‑1 (MQ=255)                                                                         gTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGt                                                         >  1:26769/1‑140 (MQ=255)                                                                         gTAATGAGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGt                                                         <  2:1046318/140‑1 (MQ=255)                                                                                           aCGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGtt                                       <  2:404921/140‑1 (MQ=255)                                                                                                 gtCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTc                                 >  1:215370/1‑140 (MQ=255)                                                                                                 gtCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTc                                 >  1:557351/1‑140 (MQ=255)                                                                                                  tCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCa                                <  2:250736/140‑1 (MQ=255)                                                                                                  tCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCa                                <  1:848340/140‑1 (MQ=255)                                                                                                        ttGGATCGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTc                          <  1:598370/140‑1 (MQ=255)                                                                                                              cGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACa                    <  2:48542/140‑1 (MQ=255)                                                                                                              cGGGAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACa                    <  1:828497/140‑1 (MQ=255)                                                                                                                ggAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAgg                       >  1:406902/1‑135 (MQ=255)                                                                                                                ggAGTAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAgg                       <  2:406902/135‑1 (MQ=255)                                                                                                                    tAGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCa              <  2:192582/140‑1 (MQ=255)                                                                                                                     aGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCAt             <  2:27027/140‑1 (MQ=255)                                                                                                                     aGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCAt             >  1:480805/1‑140 (MQ=255)                                                                                                                     aGGGTCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCAt             <  1:556503/140‑1 (MQ=255)                                                                                                                         tCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTc                          <  2:372962/123‑1 (MQ=255)                                                                                                                         tCTGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTc                          >  1:372962/1‑123 (MQ=255)                                                                                                                           tGGTTTTGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTcc       >  1:789356/1‑140 (MQ=255)                                                                                                                                ttGGATTTAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAAGa  <  1:996398/140‑1 (MQ=255)                                                                                                                                     tttAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCAt             <  1:873780/124‑1 (MQ=255)                                                                                                                                     tttAGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCAt             >  2:873780/1‑124 (MQ=255)                                                                                                                                        |                                                                                                                                    ATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGCCATATTGAGTACGGCTGCCGTAGAAGGCGTAATGCGTTTCTCCGGAACGGGTGTCGGCGTTGGATCGGGAGTAGGGTCTGGTTTTGGATTTGGGTCTGGCTTTGGATCGGGTTTTGGGTCTGGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAAGA  >  NC_000913/2778981‑2779247

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑