mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 753,125 | 0 | T | A | 37.0% | 67.8 / 24.7 | 46 | intergenic (‑330/+60) | ybgD/gltA | putative fimbrial protein YbgD/citrate synthase |
| * | NC_000913 | 4,111,747 | 0 | G | T | 34.4% | 66.0 / 14.1 | 32 | N156K (AAC→AAA) | yiiQ | DUF1454 domain‑containing protein YiiQ |
| * | NC_000913 | 4,604,344 | 0 | C | T | 32.6% | 67.4 / 20.7 | 50 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 2,326,450 | 0 | T | G | 32.5% | 65.7 / 22.7 | 40 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 30.5% | 90.3 / 44.8 | 59 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 632,011 | 0 | G | . | 23.5% | 135.1 / 39.3 | 51 | intergenic (+12/‑171) | cstA/ybdD | carbon starvation protein A/conserved protein YbdD |
| * | NC_000913 | 1,645,034 | 0 | A | C | 21.6% | 114.4 / 11.0 | 51 | intergenic (‑132/+85) | rem/hokD | Qin prophage; protein Rem/Qin prophage; toxic protein HokD |
| * | NC_000913 | 753,105 | 0 | A | T | 20.0% | 140.7 / 11.9 | 55 | intergenic (‑310/+80) | ybgD/gltA | putative fimbrial protein YbgD/citrate synthase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 79 (1.280) | 14 (0.260) | 12/244 | 2.6 | 19.3% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 47 (0.860) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | 4542682 = | 29 (0.470) | 8 (0.140) | 8/258 | 3.7 | 17.0% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 51 (0.890) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | 374922 = | NA (NA) | 8 (0.180) | 5/202 | 3.9 | NA | intergenic (+41/‑537) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | 377430 = | NA (NA) | intergenic (+119/+105) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | = 374963 | NA (NA) | 5 (0.120) | 4/190 | 4.1 | NA | noncoding (33/34 nt) | other | REP31a |
| ? | NC_000913 | = 377487 | NA (NA) | intergenic (+176/+48) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | = 818767 | 42 (0.680) | 4 (0.070) | 4/256 | 5.1 | 7.9% | coding (198/486 nt) | moaC | cyclic pyranopterin monophosphate synthase |
| ? | NC_000913 | = 818875 | 54 (0.950) | coding (306/486 nt) | moaC | cyclic pyranopterin monophosphate synthase | |||||
| * | ? | NC_000913 | = 2192869 | 102 (1.660) | 3 (0.050) | 3/272 | 5.7 | 2.9% | intergenic (‑73/+190) | yehE/mrp | DUF2574 domain‑containing protein YehE/P‑loop NTPase family protein |
| ? | NC_000913 | 2192873 = | 101 (1.670) | intergenic (‑77/+186) | yehE/mrp | DUF2574 domain‑containing protein YehE/P‑loop NTPase family protein | |||||