| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,597,313 | (C)7→8 | pseudogene (774/5422 nt) | yneO ← | AIDA‑I family autotransporter YneO |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,597,306 | 1 | . | C | 98.1% | 188.6 / ‑3.7 | 53 | pseudogene (781/5422 nt) | yneO | AIDA‑I family autotransporter YneO |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base C (29/23); total (30/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AA‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGC > NC_000913/1597170‑1597440 | gcaaTATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AA‑ccc > 2:273495/3‑140 (MQ=255) aaTATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AA‑ccccc < 1:1040510/140‑1 (MQ=255) aaTATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AA‑ccccc < 1:191601/140‑1 (MQ=255) atTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AA‑cccccccc > 1:67487/1‑139 (MQ=255) tGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AA‑cccccccctc > 1:1069310/1‑137 (MQ=255) tGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AA‑cccccccctc > 1:332034/1‑137 (MQ=255) tgtgCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTaacc‑aa‑c < 2:956386/127‑1 (MQ=255) tgtgCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTaacc‑aa‑c > 1:956386/1‑127 (MQ=255) tgCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAAt > 1:270772/1‑140 (MQ=255) gCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATa > 1:543648/1‑140 (MQ=255) ccGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCt < 2:332034/140‑1 (MQ=255) gAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTcc > 2:705565/1‑140 (MQ=255) aaaTATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTccc < 2:48737/140‑1 (MQ=255) aaaTATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTccc < 1:366048/140‑1 (MQ=255) tCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGtt > 1:658525/1‑140 (MQ=255) taGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGAt < 2:543648/140‑1 (MQ=255) agagTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTccc > 1:9768/1‑127 (MQ=255) agagTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTccc < 2:9768/127‑1 (MQ=255) agTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTAc > 1:30231/1‑140 (MQ=255) agTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTAc > 2:568894/1‑140 (MQ=255) tCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCa > 2:355254/1‑140 (MQ=255) tCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCa > 2:46200/1‑140 (MQ=255) tCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCa > 2:282622/1‑140 (MQ=255) cTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCaa > 2:276450/1‑140 (MQ=255) tGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAAt > 1:595658/1‑140 (MQ=255) tGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAAt > 1:618313/1‑140 (MQ=255) tACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCGAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGa > 1:700034/1‑140 (MQ=255) gTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAAtt < 2:522124/140‑1 (MQ=255) tgaCAGAGTCTTGATCCTGCACATTCGGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAAt > 1:55179/1‑140 (MQ=255) gagTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAgg < 2:618313/140‑1 (MQ=255) tCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAAt > 1:35848/1‑140 (MQ=255) ccTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCattatt < 1:874431/140‑1 (MQ=255) gCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTAttttt > 1:854653/1‑140 (MQ=255) gCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTAttttt > 2:1051923/1‑140 (MQ=255) acaTTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTtta > 1:1067166/1‑140 (MQ=255) tCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAg > 2:322427/1‑140 (MQ=255) cAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGc > 2:828371/1‑140 (MQ=255) aGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGcc < 1:322427/140‑1 (MQ=255) tCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCg < 1:46200/140‑1 (MQ=255) gATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGcc < 1:296570/139‑1 (MQ=255) gATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGcc > 2:296570/1‑139 (MQ=255) ccGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCt > 1:284439/1‑140 (MQ=255) ggTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCttt > 2:738313/1‑140 (MQ=255) ggTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCttt > 1:668009/1‑140 (MQ=255) ggCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCa > 1:891248/1‑140 (MQ=255) aTTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAA‑TTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGa < 1:582555/140‑1 (MQ=255) ttGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGa > 2:830635/1‑140 (MQ=255) ttGCCACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGa < 1:830635/140‑1 (MQ=255) cACCGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAAc < 2:35848/140‑1 (MQ=255) ccGATAATCGTATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCt < 2:680885/140‑1 (MQ=255) tATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACt < 1:282622/140‑1 (MQ=255) tATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACt < 1:32424/140‑1 (MQ=255) tATTTTCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACt < 2:891248/140‑1 (MQ=255) ttttCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGAc < 2:886033/123‑1 (MQ=255) ttttCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGAc > 1:886033/1‑123 (MQ=255) tttCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGcc < 1:1051923/140‑1 (MQ=255) ttCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGccc < 1:619300/140‑1 (MQ=255) tCAGCCGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCg > 1:529962/1‑140 (MQ=255) cGTAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGa < 1:828371/140‑1 (MQ=255) tAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGcc > 2:330295/1‑131 (MQ=255) tAACC‑AACCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGcc < 1:330295/131‑1 (MQ=255) acc‑aaccCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGc > 1:936448/1‑140 (MQ=255) | GAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACC‑AA‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGC > NC_000913/1597170‑1597440 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |