Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	564,815	T→C	*388* (TAA→TAG)	intD ←	DLP12 prophage; putative integrase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	564,815	0	T	C	100.0%	330.7 / NA	89	*388* (TAA→TAG)	intD	DLP12 prophage; putative integrase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (42/47);  total (42/47)

GTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCT  >  NC_000913/564678‑564950                                                                                                                                          |                                                                                                                                        gTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTa                                                                                                                                       >  1:122847/1‑140 (MQ=255)    gACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGc                                                                                                                                    >  2:68188/1‑140 (MQ=255)    gACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGc                                                                                                                                    >  1:910299/1‑140 (MQ=255)    gACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGc                                                                                                                                    >  1:886259/1‑140 (MQ=255)    gACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGc                                                                                                                                    >  1:791405/1‑140 (MQ=255)    gACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGc                                                                                                                                    <  1:68188/140‑1 (MQ=255)    gACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATACAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGc                                                                                                                                    <  2:971722/140‑1 (MQ=255)     aCCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGcc                                                                                                                                   <  1:503412/140‑1 (MQ=255)      ccGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCct                                                                                                                                  <  1:102893/140‑1 (MQ=255)      ccGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCct                                                                                                                                  >  2:102893/1‑140 (MQ=255)      ccGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCct                                                                                                                                  <  1:810801/140‑1 (MQ=255)      ccGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCct                                                                                                                                  <  1:767326/140‑1 (MQ=255)      ccGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCct                                                                                                                                  <  1:557557/140‑1 (MQ=255)      ccGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCct                                                                                                                                  >  1:225638/1‑140 (MQ=255)          ataATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCcttctt                                                                                                                              >  1:199080/1‑140 (MQ=255)          ataATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCct                                                                                                                                  >  2:794917/1‑136 (MQ=255)          ataATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCct                                                                                                                                  <  1:794917/136‑1 (MQ=255)            aaTTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTta                                                                                                                            >  2:707695/1‑140 (MQ=255)                 aCGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATAtcc                                                                                                                       >  2:528622/1‑140 (MQ=255)                   gcgATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGcc                                                                                                                                   >  2:774027/1‑126 (MQ=255)                   gcgATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGcc                                                                                                                                   <  1:774027/126‑1 (MQ=255)                             cGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCa                                                                                                           <  2:199080/140‑1 (MQ=255)                               cATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCAt                                                                                                                  >  2:383544/1‑131 (MQ=255)                               cATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCAt                                                                                                                  <  1:383544/131‑1 (MQ=255)                               cATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCaga                                                                                                         <  2:859671/140‑1 (MQ=255)                               cATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCaga                                                                                                         >  2:137187/1‑140 (MQ=255)                               cATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCaga                                                                                                         >  2:704786/1‑140 (MQ=255)                               cATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCaga                                                                                                         >  1:790128/1‑140 (MQ=255)                               cATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCaga                                                                                                         <  1:236997/140‑1 (MQ=255)                                aTTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCagag                                                                                                        <  1:707695/140‑1 (MQ=255)                                aTTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCagag                                                                                                        <  2:122847/140‑1 (MQ=255)                                aTTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCagag                                                                                                        <  2:116563/140‑1 (MQ=255)                                 ttGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCagagg                                                                                                       >  1:529104/1‑139 (MQ=255)                                 ttGCGGCATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGACCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCa                                                                                                                   <  1:820706/128‑1 (MQ=255)                                 ttGCGGCATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGACCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCa                                                                                                                   >  2:820706/1‑128 (MQ=255)                                      gTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGAc                                                                                                  <  2:1062064/140‑1 (MQ=255)                                       tATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGAc                                                                                                  >  1:214826/1‑139 (MQ=255)                                       tATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGAc                                                                                                  <  2:214826/139‑1 (MQ=255)                                                            gTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATAtt                                                                                             <  2:759145/123‑1 (MQ=255)                                                            gTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATAtt                                                                                             >  1:759145/1‑123 (MQ=255)                                                            gTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCaa                                                                            >  2:469819/1‑140 (MQ=255)                                                            gTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCaa                                                                            >  2:284860/1‑140 (MQ=255)                                                                  tAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATgt                                                                      <  2:529104/140‑1 (MQ=255)                                                                    gagCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATgtcg                                                                    <  2:790128/140‑1 (MQ=255)                                                                             ccTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTc                                                           <  1:1031103/140‑1 (MQ=255)                                                                             ccTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTc                                                           <  1:1069937/140‑1 (MQ=255)                                                                               ttCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCt                                                         >  1:69193/1‑140 (MQ=255)                                                                                tCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATCTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTc                                                        <  2:169593/140‑1 (MQ=255)                                                                                       cGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGct                                                 <  2:791405/140‑1 (MQ=255)                                                                                         tGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGctct                                               >  1:1058362/1‑140 (MQ=255)                                                                                         tGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGct                                                 >  1:323318/1‑138 (MQ=255)                                                                                         tGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGct                                                 >  1:378033/1‑138 (MQ=255)                                                                                         tGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGct                                                 <  2:680147/138‑1 (MQ=255)                                                                                         tGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGct                                                 >  1:680147/1‑138 (MQ=255)                                                                                         tGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGct                                                 <  2:378033/138‑1 (MQ=255)                                                                                         tGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGct                                                 <  2:323318/138‑1 (MQ=255)                                                                                           ggCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGt                                             >  1:1004650/1‑140 (MQ=255)                                                                                           ggCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGt                                             >  2:779810/1‑140 (MQ=255)                                                                                            gCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTc                                            >  2:348456/1‑140 (MQ=255)                                                                                                cAGGTTCGGATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAAt                                        >  2:883561/1‑140 (MQ=255)                                                                                                     tCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTa                                   <  1:137187/140‑1 (MQ=255)                                                                                                     tCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTa                                   <  2:910299/140‑1 (MQ=255)                                                                                                        aaTCCTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATCATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGgc                                <  2:225638/140‑1 (MQ=255)                                                                                                            cTGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCaa                            <  2:69193/140‑1 (MQ=255)                                                                                                             tGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAg                           >  2:310752/1‑140 (MQ=255)                                                                                                             tGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAg                           >  1:861837/1‑140 (MQ=255)                                                                                                             tGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAg                           >  2:557394/1‑140 (MQ=255)                                                                                                             tGCAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTAGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAg                           <  2:886259/140‑1 (MQ=255)                                                                                                               cAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGt                         <  1:528622/140‑1 (MQ=255)                                                                                                               cAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGt                         <  1:779810/140‑1 (MQ=255)                                                                                                               cAGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGt                         <  1:883561/140‑1 (MQ=255)                                                                                                                aGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTg                        <  2:1004650/140‑1 (MQ=255)                                                                                                                aGGGCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTg                        <  2:96114/140‑1 (MQ=255)                                                                                                                 gggCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGa                       <  2:456359/140‑1 (MQ=255)                                                                                                                  ggCGCGCCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAg                      <  2:1058362/140‑1 (MQ=255)                                                                                                                    cgcgcCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGAt                                     <  1:22834/123‑1 (MQ=255)                                                                                                                    cgcgcCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGAt                                     >  2:22834/1‑123 (MQ=255)                                                                                                                    cgcgcCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCa                    <  1:469819/140‑1 (MQ=255)                                                                                                                     gcgcCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCAt                   >  2:1079316/1‑140 (MQ=255)                                                                                                                      cgcCATTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGCGAGCATa                  >  2:625057/1‑140 (MQ=255)                                                                                                                          aTTACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTa              <  1:625057/140‑1 (MQ=255)                                                                                                                            tACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAg                           >  2:356056/1‑125 (MQ=255)                                                                                                                            tACAATTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAg                           <  1:356056/125‑1 (MQ=255)                                                                                                                               aaTTCAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAAc         <  1:348456/140‑1 (MQ=255)                                                                                                                                   cAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCAtt     >  1:934409/1‑140 (MQ=255)                                                                                                                                   cAATCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACC‑AAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCAttt    >  2:630572/1‑140 (MQ=255)                                                                                                                                     aTCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCa       >  1:548542/1‑136 (MQ=255)                                                                                                                                     aTCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCa       <  2:548542/136‑1 (MQ=255)                                                                                                                                      tCAGCTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCt  >  2:717998/1‑140 (MQ=255)                                                                                                                                          |                                                                                                                                        GTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCT  >  NC_000913/564678‑564950

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑