Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,279,520	(T)7→6	intergenic (+172/‑344)	narK → / → narG	nitrate:nitrite antiporter NarK/nitrate reductase A subunit alpha

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,279,514	0	T	.	100.0%	352.1 / NA	82	intergenic (+166/‑350)	narK/narG	nitrate:nitrite antiporter NarK/nitrate reductase A subunit alpha
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base . (44/38);  total (44/38)

GCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGAATACTCCTTAATACCCATCTGCATAAAAATCTTAATAGTT  >  NC_000913/1279383‑1279647                                                                                                                                    |                                                                                                                                      gcggctgcgTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCttttttatg                                                                                                                               <  2:11622/140‑4 (MQ=255)  cggctgcgTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCttttttatgc                                                                                                                              <  2:251854/140‑5 (MQ=255)  cggctgcgTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCttttttatgc                                                                                                                              >  2:1051167/1‑136 (MQ=255)    gctgcgTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGAAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGt                                                                                                                           <  1:713675/140‑1 (MQ=255)    gctgcgTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGAAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGt                                                                                                                           >  2:713675/1‑140 (MQ=255)       gcgTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCAt                                                                                                                        <  1:57098/140‑1 (MQ=255)       gcgTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCAt                                                                                                                        <  2:337096/140‑1 (MQ=255)       gcgTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCAt                                                                                                                        <  2:1150438/140‑1 (MQ=255)        cgTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCAtt                                                                                                                       >  2:142993/1‑140 (MQ=255)         gTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCAttt                                                                                                                      >  2:720252/1‑140 (MQ=255)                caCCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTaca                                                                                                               <  2:102393/140‑1 (MQ=255)                  ccccAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTacaac                                                                                                             <  1:1357940/140‑1 (MQ=255)                   cccAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTacaaca                                                                                                            >  2:843734/1‑140 (MQ=255)                      aGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATAc                                                                                                         <  2:787314/140‑1 (MQ=255)                      aGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATAc                                                                                                         <  2:1332498/140‑1 (MQ=255)                       gTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACt                                                                                                        >  1:1412102/1‑140 (MQ=255)                       gTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACt                                                                                                        >  1:405287/1‑140 (MQ=255)                        tCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTa                                                                                                       <  2:1400770/140‑1 (MQ=255)                        tCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTa                                                                                                       >  1:371103/1‑140 (MQ=255)                          acttacttTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAAt                                                                                                     <  1:720252/140‑1 (MQ=255)                           cttacttTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATg                                                                                                    >  1:416743/1‑140 (MQ=255)                             tacttTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGtt                                                                                                  >  2:1372586/1‑140 (MQ=255)                               cttTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTtat                                                                                                <  2:853151/140‑1 (MQ=255)                                  tAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATg                                                                                             >  2:1267838/1‑140 (MQ=255)                                  tAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATg                                                                                             >  2:809102/1‑140 (MQ=255)                                         cTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTAtt                                                                                      >  1:1269480/1‑140 (MQ=255)                                         cTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTAtt                                                                                      >  2:812489/1‑140 (MQ=255)                                         cTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTAtt                                                                                      >  1:865224/1‑140 (MQ=255)                                            cTGGGATTCATTCACTTGCCGCCTTCCTATAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCg                                                                                   >  1:1102473/1‑140 (MQ=255)                                                  ttcattcaCTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGAt                                                                             >  2:986272/1‑140 (MQ=255)                                                    cattcaCTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGAttt                                                                           >  1:1043116/1‑140 (MQ=255)                                                      ttcaCTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCa                                                                         >  2:1307239/1‑140 (MQ=255)                                                          cTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTaa                                                                     >  1:498158/1‑140 (MQ=255)                                                          cTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTaa                                                                     >  1:197613/1‑140 (MQ=255)                                                           ttGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAag                                                                    >  2:1178573/1‑140 (MQ=255)                                                            tGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAaga                                                                   <  2:678021/140‑1 (MQ=255)                                                            tGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAaga                                                                   <  2:371103/140‑1 (MQ=255)                                                            tGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAaga                                                                   <  2:1269480/140‑1 (MQ=255)                                                             gccgccTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAagag                                                                  >  1:541044/1‑140 (MQ=255)                                                             gccgccTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAagag                                                                  <  2:441401/140‑1 (MQ=255)                                                                  cTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCAtt                                                             <  1:812489/140‑1 (MQ=255)                                                                           aaCCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTa                                                    <  1:413667/140‑1 (MQ=255)                                                                            aCCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTAc                                                   <  2:440396/140‑1 (MQ=255)                                                                            aCCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTAc                                                   <  2:194004/140‑1 (MQ=255)                                                                              cGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTAccc                                                 <  1:142993/140‑1 (MQ=255)                                                                              cGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTAccc                                                 >  1:753891/1‑140 (MQ=255)                                                                                aaTTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCAt                                               >  2:916309/1‑140 (MQ=255)                                                                                aaTTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCAt                                               >  2:1285181/1‑140 (MQ=255)                                                                                     tataGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGa                                          <  1:217981/140‑1 (MQ=255)                                                                                      ataGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGaa                                         <  1:390588/140‑1 (MQ=255)                                                                                      ataGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGaa                                         <  1:726489/140‑1 (MQ=255)                                                                                        agagTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGAATa                                       <  2:416743/140‑1 (MQ=255)                                                                                        agagTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGAATa                                       <  1:654022/140‑1 (MQ=255)                                                                                        agagTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGAATa                                       <  2:865224/140‑1 (MQ=255)                                                                                        agagTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGAATa                                       <  2:498158/140‑1 (MQ=255)                                                                                        agagTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGAATa                                       <  1:1367981/140‑1 (MQ=255)                                                                                        agagTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGAATa                                       <  2:235088/140‑1 (MQ=255)                                                                                        agagTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGAATa                                       >  1:235088/1‑140 (MQ=255)                                                                                         gagTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGAATAc                                      <  1:1178573/140‑1 (MQ=255)                                                                                          agTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGAATACt                                     >  1:1404113/1‑140 (MQ=255)                                                                                          agTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGAATACt                                     >  1:688997/1‑140 (MQ=255)                                                                                          agTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGAATACt                                     >  2:344865/1‑140 (MQ=255)                                                                                          agTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCAT‑GGGAATACTc                                    >  1:723224/1‑140 (MQ=255)                                                                                               aaTATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGAATACTCCt                                  <  1:441135/138‑1 (MQ=255)                                                                                               aaTATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGAATACTCCt                                  >  2:441135/1‑138 (MQ=255)                                                                                               aaTATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGAATACTCCTTa                                >  2:1141967/1‑140 (MQ=255)                                                                                               aaTATTTGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGAATACTCCTTa                                >  1:1174121/1‑140 (MQ=255)                                                                                                    ttGATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGAATACTCCTTAATAcc                           >  2:1099168/1‑140 (MQ=255)                                                                                                      gATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGAATa                                       <  1:532760/126‑1 (MQ=255)                                                                                                      gATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGAATa                                       >  2:532760/1‑126 (MQ=255)                                                                                                      gATTATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGAATACTCCTTAATACCCa                         >  1:471144/1‑140 (MQ=255)                                                                                                        ttATCCTTTGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGAATACTCCTTAATACCCATc                       <  1:1307239/140‑1 (MQ=255)                                                                                                              tttGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGAATACTCCTTAATACCCATCTGCATa                 <  1:1099168/140‑1 (MQ=255)                                                                                                                tGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGAATACTCCTTAATACCCATCTGCATaaa               >  1:610255/1‑140 (MQ=255)                                                                                                                tGCGCGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGAATACTCCTTAATACCCATCTGCATaaa               >  1:278887/1‑140 (MQ=255)                                                                                                                 gcgcGGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGAATACTCCTTAATACCCATCTGCATaaaa              >  1:1108290/1‑140 (MQ=255)                                                                                                                  cgcgGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGAATACTCCTTAATACCCATCTGCATaaaaa             >  2:1283189/1‑140 (MQ=255)                                                                                                                   gcgGCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGAATACTCCTTAATACCCATCTGCATAAAAAt            <  2:197613/140‑1 (MQ=255)                                                                                                                     ggCATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGAATACTCCTTAATACCCATCTGCATAAAAATCt          >  1:1257707/1‑140 (MQ=255)                                                                                                                       cATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGAATACTCCTTAATACCCATCTGCATAAAAATCTTa        >  2:386386/1‑140 (MQ=255)                                                                                                                       cATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGAATACTCCTTAATACCCATCTGCATAAAAATCTTa        >  2:376794/1‑140 (MQ=255)                                                                                                                       cATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGAATACTCCTTAATACCCATCTGCATAAAAATCTTa        >  1:1193223/1‑140 (MQ=255)                                                                                                                       cATGATGTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGAATACTCCTTAATACCCATCTGCATAAAAATCTTa        <  2:1193223/140‑1 (MQ=255)                                                                                                                        atgatgTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGAATACTCCTTAATACCCATCTGCATAAAAATCTTaa       <  1:986272/140‑1 (MQ=255)                                                                                                                             gTCGCGC‑TTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGAATACTCCTTAATACCCATCTGCATAAAAATCTTAATAGtt  <  2:225078/140‑1 (MQ=255)                                                                                                                                    |                                                                                                                                      GCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGATTTCATTAAGAGCCATTAATATGTTACCCATGGGGAATACTCCTTAATACCCATCTGCATAAAAATCTTAATAGTT  >  NC_000913/1279383‑1279647

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑