| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,210,473 | (C)6→7 | coding (1374/1845 nt) | yehQ → | SWIM zinc finger domains‑containing protein YehQ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,210,467 | 1 | . | C | 97.4% | 131.1 / ‑3.1 | 39 | coding (1368/1845 nt) | yehQ | SWIM zinc finger domains‑containing protein YehQ |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base C (21/17); total (21/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.62e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.36e-01 | |||||||||||
CGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATGCCTGGCAAATGTTGAGCGCGCCGTTACGCCAGCCGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCG‑T‑CCCCCCGCCTGCATACGGCCTCTTAATCAGGTCGATAACTTATTTATTCTGCCGGTCGCTGAGTGTATTTCGCTCGGTTGGGACAGCAGCCGCCAGACGCTGGATGCGCAGGTCATTAGCGGCGAAGGGGA > NC_000913/2210338‑2210598 | cGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATGCCTGGCAAATGTTGAGCGCGCCGTTACGCCAGCCGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCG‑T‑cccccccgcc < 1:380750/140‑5 (MQ=255) aGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATGCCTGGCAAATGTTGAGCGCGCCGTTACGCCAGCCGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCG‑TCCCCCCCGCCTg > 1:511747/1‑140 (MQ=255) gctgTTAGCTACCCGCAGCCGCTTAAGCAGCGTTGTCCCGCTGTCGCCGGGGGCCTGGCAAATGTTGGGCGCCCCGTTCCGCCAGCGGGGCATTGTGGCTTTGCGGGAATTTTTGCGCCGGCG‑TCCCCCCCGCCTGCATa < 2:489549/140‑1 (MQ=255) cggTTAGCTCCCCGCAACCGCTTAAGCGGCGTGGTCCCGCTGCCGCCTGATGCCGGGCAAATGTTGAGCGCGCCGTTACGCCAGCCGGGCATTGTGGTTTTGCGGGAATATTTACGCCAGCG‑TCCCCCCCGCCTGCATAc < 2:921529/138‑1 (MQ=255) tgTTAGCTCCCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATGCCTGGCAAATGTTGAGCGCGCCGTTACGCCAGCCGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCG‑TCCCCCCCGCCTGCATACg < 2:763506/140‑1 (MQ=255) tgTTAGCTACCCGCAACCGCTTAAGCGGCGTTGTGCCGCTGTCGCCTGATGCCTGGCAAATGTTGAGCGCGCCGTTACGCCAGCCGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCG‑TCCCCCCCGCCTGCATACg < 2:1087699/140‑1 (MQ=255) tgTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATGCCTGGCAAATGTTGAGCGCGCCGTTACGCCAGCCGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCG‑TCCCCCCCGCCTGCATACg < 1:239877/140‑1 (MQ=255) tgTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATGCCTGGCAAATGTTGAGCGCGCCGTTACGCCAGCCGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCG‑TCCCCCCCGCCTGCATACg < 1:1186831/140‑1 (MQ=255) tgTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATGCCTGGCAAATGTTGAGCGCGCCGTTACGCCAGCCGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCG‑TCCCCCCCGCCTGCATACg < 1:1029400/140‑1 (MQ=255) tgTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATGCCTGGAAAATGTTGAGCGCGCCGTTACGCCAGCCGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCG‑TCCCCCCCGCCTGCATACg < 1:809979/140‑1 (MQ=255) aGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATGCCTGGCAAATGTTGAGCGCGCCGTTACGCCAGCCGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCG‑TCCCCCCCGCCTGCATACGGCct > 2:792704/1‑140 (MQ=255) cccGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATGCCTGGCAAATGTTGAGCGCGCCGTTACGCCAGCCGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCG‑TCCCCCCCGCCTGCATACGGCCTCTTaa > 2:322888/1‑140 (MQ=255) ccGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATGCCTGGCAAATGTTGAGCGCGCCGTTACGCCAGCCGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCG‑TCCCCCCCGCCTGCATACGGCCTCTTAAt > 2:1394956/1‑140 (MQ=255) ccGCAACCGCTTAAGCAGCGTTGTGCCGCTGCCGCCTGATGCCTGGCAAATGTTGAGCGCGCCGTTACGCCAGCCGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCG‑TCCCCCCCGCCTGCATACGGCCTCTTAAt < 1:271865/140‑1 (MQ=255) gCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATGCCTGGCAAATGTTGAGCGCGCCGTTACGCCAGCCGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCG‑TCCCCCCCGCCTGCATACGGCCTCTTAATCa > 2:917254/1‑140 (MQ=255) gCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATGCCTGGCAAATGTTGAGCGCGCCGTTACGCCAGCCGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCG‑TCCCCCCCGCCTGCATACGGCCTCTTAATCAGGTCGa < 1:1394956/140‑1 (MQ=255) cTTAAGCAGCGTTGTGCCGCTGTCGCCTGATGCCTGGCAAATGTTGAGCGCGCCGTTACGCCAGCTGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCG‑TCCCCCCCGCCTGCATACGGCCTCTTAATCAGGTCGAt > 2:1242553/1‑140 (MQ=255) cTTAAGCAGCGTTGTGCCGCTGTCGCCTGATGCCTGGCAAATGTTGAGCGCGCCGTTACGCCAGCCGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCG‑TCCCCCCCGCCTGCATACGGCCTCTTAATCAGGTCGAt > 2:711467/1‑140 (MQ=255) tAAGCAGCGTTGTGCCGCTGTCGCCTGATGCCTGGCAAATGTTGAGCGCGCCGTTACGCCAGCCGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCG‑TCCCCCCCGCCTGCATACGGCCTCTTAATCAGGTCGATaa < 1:711467/140‑1 (MQ=255) aaGCAGCGTTGTGCCGCTGTCGCCTGATGCCTGGCAAATGTTGAGCGCGCCGTTACGCCAGCCGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCG‑TCCCCCCCGCCTGCATACGGCCTCTTAATCAGGTCGATAAc > 2:150782/1‑140 (MQ=255) gTTGTGCCGCTGTCGCCTGATGCCTGGCAAATGTTGAGCGCGCCGTTACGCCAGCCGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCG‑TCCCCCCCGCCTGCATACGGCCTCTTAATCAGGTCGATAACttattta > 1:144536/1‑140 (MQ=255) cTGTCGCCTGATGCCTGGCAAATGTTGAGCGCGCCGTTACGCCAGCCGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCG‑TCCCCCCCGCCTGCATACGGCCTCTTAATCAGGTCGATAACTTATTTATTCTGCCgg > 2:1081714/1‑140 (MQ=255) tCGCCTGATGCCTGGCAAATGTTGAGCGCGCCGTTACGCCAGCCGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCG‑TCCCCCCCGCCTGCATATGGCCTCTTAATCAGGTCGATAACTTATTTATTCTGCCGGTCg > 2:306975/1‑140 (MQ=255) tCGCCTGATGCCTGGCAAATGTTGAGCGCGCCGTTACGCCAGCCGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCG‑TCCCCCCCGCCTGCATACGGCCTCTTAATCAGGTCGATAACTTATTTATTCTGCCGGTCg > 1:941883/1‑140 (MQ=255) ggCCGGATGCCTGGAAAATGTTGAGCGCCCCGTTACGCCAGCGGGGCATTGTGGCTTTGGGGAAATATTTACGCCAGCG‑TCCCCCCCGCCTGCATACGGCCTCTTAATCAGGTCGATAACTTATTTATTCTGCCGGTCGc < 2:347117/139‑1 (MQ=255) ccTGGCAAATGTTGAGCGCGCCGTTACGCCAGCCGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCG‑TCCCCCCCGCCTGCATACGGCCTCTTAATCAGGTCGATAACTTATTTATTCTGCCGGTCGCTGAGTGTAt > 2:324844/1‑140 (MQ=255) cAAATGTTGAGCGCGCCGTTACGCCAGCCGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCG‑TCCCCCCCGCCTGCATATGGCCTCTTAATCAGGTCGATAACTTATTTATTCTGCCGGTCGCTGAGTGTATTTCGc < 1:306975/140‑1 (MQ=255) aaaTGTTGGGCGCGCCGTTACGCCAGCCGGGCTTTGTGGCTTTGCGGGAATATTTACGCCAGCG‑TCCCCCCCGCCTGCATACGGCCTCTTAATCAGGTCGATAACTTATTTATTCTGCCGGTCGCTGAGTGTATTTCGCt < 2:117858/140‑1 (MQ=255) gcgcgcCGTTACGCCAGCCGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCG‑TCCCCCCCGCCTGCATACGGCCTCTTAATCAGGTCGATAACTTATTTATTCTGCCGGTCGCTGAGTGTATTTCGCTCGGTTGGGa > 2:332518/1‑140 (MQ=255) cgcgcCGTTACGCCAGCCGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCG‑TCCCCCCCGCCTGCATACGGCCTCTTAATCAGGTCGATAACTTATTTATTCTGCCGGTCGCTGAGTGTATTTCGCTCGGTTGGGAc > 1:839742/1‑140 (MQ=255) cgcCGTTACGCCAGCCGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCGCC‑CCCCCCGCCTGCATACGGCCTCTTAATCAGGTCGATAACTTATTTATTCTGCCGGTCGCTGAGTGTATTTCGCTCGGTTGGGAcag < 2:1355140/140‑1 (MQ=255) cgcCGTTACGCCAGCCGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCG‑TCCCCCCCGCCTGCATACGGCCTCTTAATCAGGTCGATAACTTATTTATTCTGCCGGTCGCTGAGTGTATTTCGCTCGGTTGGGAcag > 2:830569/1‑140 (MQ=255) gCCGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCG‑TCCCCCCCGCCTGCATACGGCCTCTTAATCAGGTCGATAACTTATTTATTCTGCCGGTCGCTGAGTGTATTTCGCTCGGTTGGGACAGCAGCCGCCAGACg > 1:166479/1‑140 (MQ=255) gCCGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCG‑TCCCCCCCGCCTGCATACGGCCTCTTAATCAGGTCGATAACTTATTTATTCTGCCGGTCGCTGAGTGTATTTCGCTCGGTTGGGACAGCAGCCGCCAGACg > 2:407653/1‑140 (MQ=255) ccGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCG‑TCCCCCCCGCCTGCATACGGCCTCTTAATCAGGTCGATAACTTATTTATTCTGCCGGTCGCTGAGTGTATTTCGCTCGGTTGGGACAGCAGCCGCCAGACGc > 1:132994/1‑140 (MQ=255) tgtgGCTTTGCGGGAATATTTACGCCAGCG‑TCCCCCCCGCCTGCATACGGCCTCTTAATCAGGTCGATAACTTATTTATTCTGCCGGTCGCTGAGTGTATTTCGCTCGGTTGGGACAGTAGCCGCCAGACGCTGGATgcg < 1:556074/140‑1 (MQ=255) tatTTACGCCAGCG‑TCCCCCCCGCCTGCATACGGCCTCTTAATCAGGTCGATAACTTATTTATTCTGCCGGTCGCTGAGTGTATTTCGCTCGGTTGGGACAGCAGCCGCCAGACGCTGGATGCGCAGGTCATTAgcggcg < 1:150782/140‑1 (MQ=255) tttACGCCAGCG‑TCCCCCCCGCCTGCATACGGCCTCTTAATCAGGTCGATAACTTATTTATTCTGCCGGTCGCTGAGTGTATTTCGCTCGGTTGGGACAGCAGCCGCCAGACGCTGGATGCGCAGGTCATTAGCGGCGaa < 1:322888/140‑1 (MQ=255) tACGCCAGCG‑TCCCCCCCGCCTGCATACGGCCTCTTAATCAGGTCGATAACTTATTTATTCTGCCGGTCGCTGAGTGTATTTCGCTCGGTTGGGACAGCAGCCGCCAGACGCTGGATGCGCAGGTAATTAGCGGCGAAgg > 1:374395/1‑140 (MQ=255) gCCAGCG‑TCCCCCCCGCCTGCATACGGCCTCTTAATCAGGTCGATAACTTATTTATTCTGCCGGTCGCTGAGTGTATTTCGCTCGGTTGGGACAGCAGCCGCCAGACGCTGGATGCGCAGGTCATTAGCGGCGAAGGGGa > 2:517520/1‑140 (MQ=255) | CGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGTGCCGCTGTCGCCTGATGCCTGGCAAATGTTGAGCGCGCCGTTACGCCAGCCGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCG‑T‑CCCCCCGCCTGCATACGGCCTCTTAATCAGGTCGATAACTTATTTATTCTGCCGGTCGCTGAGTGTATTTCGCTCGGTTGGGACAGCAGCCGCCAGACGCTGGATGCGCAGGTCATTAGCGGCGAAGGGGA > NC_000913/2210338‑2210598 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |