Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,568,5040TG35.4% 178.4 / 22.5 112T6P (ACC→CCC) mdtMmultidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter
Reads supporting (aligned to +/- strand):  ref base T (19/52);  new base G (39/0);  total (60/52)
Fisher's exact test for biased strand distribution p-value = 1.15e-15
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 115 total aligned reads displayed.

GGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAAC  >  NC_000913/4568369‑4568643
                                                                                                                                        |                                                                                                                                              
gggCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑aaaa                                                                                                                                           >  1:947229/1‑140 (MQ=255)
gggCAAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑aaaa                                                                                                                                           >  2:936339/1‑140 (MQ=255)
       aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTg                                                                                                                                    <  1:1080447/140‑1 (MQ=255)
       aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTg                                                                                                                                    <  2:565262/140‑1 (MQ=255)
          gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCa                                                                                                                                 <  2:1303033/140‑1 (MQ=255)
           aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCAt                                                                                                                                >  1:337527/1‑140 (MQ=255)
            cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGG‑AAAAAAACGTGGCATa                                                                                                                               >  2:1142193/1‑140 (MQ=255)
                 gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGG‑AAAAAAAAGTGGCATaaaaaa                                                                                                                          >  2:804252/1‑140 (MQ=255)
                   aTTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGG‑AAAAAAAAGAGGCATaacaaaaa                                                                                                                        >  2:248063/1‑138 (MQ=255)
                        aaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTcc                                                                                                                   <  2:206704/140‑1 (MQ=255)
                        aaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTcc                                                                                                                   <  2:461176/140‑1 (MQ=255)
                            aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGt                                                                                                               <  2:858126/140‑1 (MQ=255)
                            aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAAAGTGGCATAACAAACAACTCCtttt                                                                                                               >  1:515730/1‑138 (MQ=255)
                             cGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTc                                                                                                              <  1:1320168/140‑1 (MQ=255)
                             cGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTc                                                                                                              <  1:1407876/140‑1 (MQ=255)
                                aCCACATTAATGATCCCAGGCTGGATCAGATCCGTCAACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTGAAAAAAACGTGACATAA‑AAACAACACCGTTTcctg                                                                                                           >  1:387281/1‑138 (MQ=255)
                                  cacaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑Ggag                                                                                                        <  1:459296/140‑1 (MQ=255)
                                     aTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAAAGAGGCATAACAAACAAATCCCTTTCC‑GGAG‑AAc                                                                                                    >  2:389521/1‑140 (MQ=255)
                                     aTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGG‑AAAAAAAAGTGGCATAACAAAAAACTCCTTGTCC‑GGAG‑AAc                                                                                                    >  2:1165834/1‑140 (MQ=255)
                                      ttAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AAcc                                                                                                   >  1:425557/1‑140 (MQ=255)
                                        aaTGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGG‑AAAAAAAAGTGGCATAAAAAAAAAATCCTTGTCC‑GGAG‑AAcccc                                                                                                 >  2:1239700/1‑140 (MQ=255)
                                         aTGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAAAGTGGCATAACAAAAAACACCTTGTCC‑GGGG‑AAccccc                                                                                                >  2:632255/1‑139 (MQ=255)
                                         aTGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGG‑AAAAAAAAGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCa                                                                                                >  1:399323/1‑140 (MQ=255)
                                         aTGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGG‑AAAAAAAAGTGGCATAACAAAAAACTCCTTGTCC‑GGAG‑AAACCCa                                                                                                >  1:283711/1‑140 (MQ=255)
                                           gATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAAc                                                                                              <  1:1371948/140‑1 (MQ=255)
                                            aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGG‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACg                                                                                             >  1:1235921/1‑140 (MQ=255)
                                            aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGG‑AAAAAAAAGTGGCATAACAAACAACTCCCTGTCC‑CGGG‑AACCCCAACg                                                                                             >  1:1006996/1‑140 (MQ=255)
                                            aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGG‑AAAAAAAAGCGGCATAACAAAAAACTCCTTTTCC‑GGAG‑AACCCCAACg                                                                                             >  1:865859/1‑140 (MQ=255)
                                            aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGG‑AAAAAAAAATGGCATAACAAAAAACTCCTTTTCC‑GGAG‑GACCCCAACg                                                                                             >  2:246349/1‑140 (MQ=255)
                                              cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACggg                                                                                           >  1:897808/1‑140 (MQ=255)
                                              cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAAAGTGGCATAACAAACAACTCCTTTTCC‑GGAG‑AACCCCAACggg                                                                                           >  1:383217/1‑140 (MQ=255)
                                              cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAAAGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACggg                                                                                           >  1:206229/1‑140 (MQ=255)
                                              cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGG‑AAAAAATAGGGGCATAAAAAAAAAATCCTTTTTC‑GGGG‑AAACCCCACggg                                                                                           >  2:1308849/1‑140 (MQ=255)
                                              cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGG‑AAAAAAAAGTGGCATAACAAACAACTCACTGTCC‑GGAG‑AACCCCCACggg                                                                                           >  1:997017/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGG‑AAAAAAACGTGGCATAACAAACAACTCCTTTTCC‑GGAG‑AACCCCAACgggg                                                                                          >  1:540969/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGG‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACgggg                                                                                          >  1:797694/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGG‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACgggg                                                                                          >  1:368351/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGG‑AAAAAAAAGTGGCATAACAAACAAATCCTTGTCC‑GGGG‑AACCCCAAAgggg                                                                                          >  2:110550/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGG‑AAAAAAAAATGGCATAACAAAAAACTCCTTGTCC‑GGAG‑AACCCCAACgggg                                                                                          >  1:765428/1‑140 (MQ=255)
                                                cAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGG‑AAAAAAAAGTGGCATAACAAAAAACTCCTTGTCC‑GGGG‑AAACCCAACggggg                                                                                         >  2:57575/1‑139 (MQ=255)
                                                 aGGCTTGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGG‑AAAAAAACAGGGCATAAAAAAAAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGaa                                                                                        >  2:435196/1‑140 (MQ=255)
                                                   gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGaaaa                                                                                      <  2:1231109/140‑1 (MQ=255)
                                                     tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACg                                                                                    <  1:235860/140‑1 (MQ=255)
                                                     tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACg                                                                                    <  2:192875/140‑1 (MQ=255)
                                                     tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACg                                                                                    <  1:110550/140‑1 (MQ=255)
                                                     tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACg                                                                                    <  1:300549/140‑1 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGG‑AAAAAAACGTGGCATAACAAAAAACTCCTTGTCC‑GGAG‑AAACCCAACGGGGGAAACGaa                                                                                  >  1:482199/1‑140 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGG‑AAAAAAAACTGGCATAAAAAAAAACTCCCTTTCC‑GGAG‑AACCCCAACGGGGGAAAAGaa                                                                                  >  1:600573/1‑140 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGG‑AAAAAAAAGTGGCATAAAAAAAAACACCTTGTCC‑GGAG‑AAACCCCACGGGGGAAAAGaaa                                                                                 >  2:235860/1‑140 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGG‑AAAAAAAAGCGGCATAAAAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGgaaaaaaaa                                                                                 >  2:817964/1‑135 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGG‑AAAAAAAAACGGCATAAAAAACAAATCCTTGTCC‑GGAGAAACCCCACCGGGGaaaaaaaa                                                                                  >  2:646023/1‑136 (MQ=255)
                                                            gATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCa                                                                             <  2:154563/140‑1 (MQ=255)
                                                             aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGG‑AAAAAAAAAGGGGATAAAAAAAAACACCTTGTCC‑GGAG‑AAACCCAACGGGGGAAAAAAAAATCaa                                                                            >  2:300549/1‑140 (MQ=255)
                                                              tCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAAt                                                                           <  2:891891/140‑1 (MQ=255)
                                                                  tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGA‑AAAAAAACGGGGC‑TAACAAACAACCCCCTTTCC‑CGAA‑GACCCCAACGGGGAAAAAGAAAATCCATAccc                                                                       >  2:134639/1‑139 (MQ=255)
                                                                  tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAAAGTGGGATAAAAAAAAACTCCTTGTCC‑GGAG‑AAACCCAACGGGGGAAAAGAAATTCAATAACg                                                                       >  2:485808/1‑140 (MQ=255)
                                                                      cAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCgg                                                                   <  1:646023/140‑1 (MQ=255)
                                                                         aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGG‑AAAAAAAAGCGGCATAACAAAAAAATCCTTTTCC‑GGGG‑AACCCCAACCGGGGAAAAGAAAATCAAAACCCCCGGTaa                                                                >  2:489274/1‑140 (MQ=255)
                                                                            cGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAAAGGGGCATAAAAAAAAAATCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAAAGAAATTTAATACCGGCGGGAATGa                                                             >  2:229482/1‑140 (MQ=255)
                                                                                gcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaa                                                         <  2:425557/140‑1 (MQ=255)
                                                                                gcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAAAGGGGGATAACAAAAAACCCCTTGTTC‑GGGG‑AAACCCCAAGGGGGAAACGAAAATCAAAAACGGCGGTAATGACGaa                                                         >  2:477499/1‑140 (MQ=255)
                                                                                 caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa                                                        <  2:947229/140‑1 (MQ=255)
                                                                                 caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa                                                        <  2:1235921/140‑1 (MQ=255)
                                                                                 caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa                                                        <  1:1239700/140‑1 (MQ=255)
                                                                                   aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                      <  2:514480/140‑1 (MQ=255)
                                                                                   aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGG‑AAAAAAACGTGGCATAAAAAAAAACTCCTTGTCC‑GGAG‑AACCCCCACGGGGGAAAAGAAAATCAATACCGTCGGGAATGACGaaaag                                                      >  2:1243162/1‑138 (MQ=255)
                                                                                    aGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGG‑AAAAAAACGTGGCATAACAAACAACTCCTTTTCC‑GGGG‑GACCCCAACGGGGAAAAAGAAAATCAATACCGTCGGGAAAGAAGaaaagg                                                     >  2:634473/1‑137 (MQ=255)
                                                                                    aGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGG‑AAAAAAAAGTGGCATAAAAAAAAACTCCCTTTCC‑GGGG‑AACCCCCACGGGGGAAAAGAAAATTAAAAACGCCGGGAATGACGGAAggg                                                     >  2:1016860/1‑139 (MQ=255)
                                                                                      tCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAg                                                   <  1:1348403/140‑1 (MQ=255)
                                                                                      tCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAg                                                   <  1:388690/140‑1 (MQ=255)
                                                                                        aTACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGt                                                 <  1:485808/140‑1 (MQ=255)
                                                                                          aCAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTga                                               <  2:510920/140‑1 (MQ=255)
                                                                                           cAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgag                                              <  1:632255/140‑1 (MQ=255)
                                                                                           cAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGG‑AAAAAAAAGTGGCATAAAAAAAAAATCCCTGTCC‑GGGG‑AAACCCCACGGGGGAAAAGAAAATTAATACCCTCGGGAATGACGAAAAGCAGGGgag                                              >  2:464215/1‑140 (MQ=255)
                                                                                            aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGGAAGGCAGGTgaga                                             <  1:1016860/140‑1 (MQ=255)
                                                                                            aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga                                             <  1:936339/140‑1 (MQ=255)
                                                                                              aaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAg                                           <  1:246349/140‑1 (MQ=255)
                                                                                                tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAAAGAGGCATAACAAAAAAAACCTTTTCCGGGGG‑AACCCCAAGGGGGAAAA‑GAAAATCAAAAACCTCGGGAATGACGAAAAGCAGGGGGGAAggg                                         >  2:599813/1‑140 (MQ=255)
                                                                                                tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGG‑AAAAAAACGTGGCATAAAAAAAAACTCCTTGTCC‑CGAG‑AACCCCAACGGGGAAAAAGAAATTCAAAACCGTCGGTAATGAAGAAAAGCAGGGGAGAAggg                                         >  2:1318948/1‑140 (MQ=255)
                                                                                                tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGG‑AAAAAAAAGTGGCATAAAAAACAACTCCTTGTCC‑GGAG‑AACCCCCACGGGGGAAAAGAAAATCAATACCGTCGGTAATGACGAAAAGCAGGGGAGAAggg                                         >  2:1348403/1‑140 (MQ=255)
                                                                                                tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGG‑AAAAAAAAGGGGGATAAAAAAAAAATCCTTGTCC‑GGAG‑AACCCCCACGGGGGAAACGAAAATTAAAACCGTCGGGAATGACGAAAAGCAGGGGGGAAagg                                         >  2:733225/1‑140 (MQ=255)
                                                                                                   aCGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGcta                                      <  1:1294887/140‑3 (MQ=255)
                                                                                                   aCGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCaa                                      <  1:327008/140‑1 (MQ=255)
                                                                                                    cGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGG‑AAAAAAAAGGGGGATAAAAAAAAAATCCTTGTCC‑GGAG‑AACCCCCACGGGGGAAACGAAATTTAATAACGTCGGGAATGAAGAAAAGCAGGggggaaggggaaa                                     >  2:1104659/1‑139 (MQ=255)
                                                                                                      ccATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCACGTGAGAAGGGCAACga                                   <  2:912332/140‑1 (MQ=255)
                                                                                                       cATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACgag                                  <  1:248063/140‑1 (MQ=255)
                                                                                                        aTCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAAAGGGGCTTAAAAAAAAACCCCTTTTCC‑GGGG‑AACCCCAACGGGGAAAACGAAATTAAAAACCCCCGGGAATGACGAAAGGCAGGGGGGAAGGGGAACgaga                                 >  2:904794/1‑140 (MQ=255)
                                                                                                         tCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc                                <  2:446177/140‑1 (MQ=255)
                                                                                                              aaaaaCAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                           <  2:602150/140‑1 (MQ=255)
                                                                                                                    aGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc                     <  1:1158292/140‑1 (MQ=255)
                                                                                                                       gTGGCGGCATGGC‑GGGT‑AAAAAAAAGTGGCATAACAAACAACTCCTTTTCC‑GGAG‑AACCCCAACGGGGGAAAAGAAAATCAAAACCGTCGGGAATGACGAAAAGGAGGGGAGAAGGGGAACGAGACTGCAAATGTACTGa                  >  2:859099/1‑140 (MQ=255)
                                                                                                                             gcATGGC‑GGGT‑AAAAAAAAGCGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAAAGGGGGAAACGAAAATCAATAACGTCGGTGATTAAGAAAAGCAGGGGAGAAGGGGAAAGAGAACGCAAAAGGACTGAATTTCa            >  2:1158292/1‑140 (MQ=255)
                                                                                                                               aTGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATg          <  1:489274/140‑1 (MQ=255)
                                                                                                                               aTGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATg          <  2:897808/140‑1 (MQ=255)
                                                                                                                                 ggC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa        <  2:797694/140‑1 (MQ=255)
                                                                                                                                 ggC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa        <  2:1120267/140‑1 (MQ=255)
                                                                                                                                 ggC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa        <  2:472137/140‑1 (MQ=255)
                                                                                                                                   c‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAAt      <  2:354368/140‑1 (MQ=255)
                                                                                                                                   c‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAAt      <  2:765428/140‑1 (MQ=255)
                                                                                                                                        t‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAAc  <  1:1372222/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                              
GGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGT‑AAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAAC  >  NC_000913/4568369‑4568643

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑