Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,836,534	(C)6→5	intergenic (+218/‑419)	selC → / → setC	tRNA‑Sec/putative arabinose exporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,836,529	0	C	.	100.0%	359.2 / NA	82	intergenic (+213/‑424)	selC/setC	tRNA‑Sec/putative arabinose exporter
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (35/47);  total (35/47)

ATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGCCCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGAAAAAAACTGACTATAAACTTCACC  >  NC_000913/3836390‑3836664                                                                                                                                            |                                                                                                                                        aTCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGc                                                                                                                                         >  2:871734/1‑140 (MQ=255) aTCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGc                                                                                                                                         >  1:588854/1‑140 (MQ=255) aTCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGc                                                                                                                                         <  1:811014/140‑1 (MQ=255)  tCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGcc                                                                                                                                        <  1:998759/140‑1 (MQ=255)  tCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGcc                                                                                                                                        >  1:990870/1‑140 (MQ=255)    ggCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGcccc                                                                                                                                      <  2:244516/140‑1 (MQ=255)     gCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGccccc                                                                                                                                     >  1:435649/1‑140 (MQ=255)     gCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGccccc                                                                                                                                     >  1:1069928/1‑140 (MQ=255)     gCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGccccc                                                                                                                                     >  2:350589/1‑140 (MQ=255)     gCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGccccc                                                                                                                                     >  2:426596/1‑140 (MQ=255)     gCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGccc                                                                                                                                       <  2:344445/138‑1 (MQ=255)     gCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGccc                                                                                                                                       >  1:344445/1‑138 (MQ=255)       ttCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGccccctg                                                                                                                                   >  1:550819/1‑138 (MQ=255)         cAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGccccctgct                                                                                                                                 <  1:871734/140‑5 (MQ=255)         cAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGccccctgct                                                                                                                                 <  1:640358/140‑5 (MQ=255)         cAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGccccctgct                                                                                                                                 >  1:945996/1‑136 (MQ=255)             aaTACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGAct                                                                                                                            <  1:834407/140‑1 (MQ=255)             aaTACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAATATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGAct                                                                                                                            <  1:408214/140‑1 (MQ=255)                aCCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACtctc                                                                                                                         >  2:177872/1‑140 (MQ=255)                 ccTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCa                                                                                                                        >  1:176029/1‑140 (MQ=255)                 ccTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCa                                                                                                                        >  2:567569/1‑140 (MQ=255)                 ccTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCa                                                                                                                        >  1:751708/1‑140 (MQ=255)                  cTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAg                                                                                                                       <  2:363114/140‑1 (MQ=255)                     gTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCa                                                                                                                    <  2:56996/140‑1 (MQ=255)                     gTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCa                                                                                                                    <  2:751708/140‑1 (MQ=255)                      tCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCaa                                                                                                                   >  2:522053/1‑140 (MQ=255)                      tCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCaa                                                                                                                   >  2:766938/1‑140 (MQ=255)                      tCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCaa                                                                                                                   >  1:161527/1‑140 (MQ=255)                      tCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCaa                                                                                                                   >  2:1060696/1‑140 (MQ=255)                           ggTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTa                                                                                                              >  2:331576/1‑140 (MQ=255)                            gTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGGTGACTCTCAGCCAACTGTAt                                                                                                             <  1:60462/140‑1 (MQ=255)                            gTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTAt                                                                                                             <  2:300877/140‑1 (MQ=255)                            gTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTAt                                                                                                             <  1:774030/140‑1 (MQ=255)                            gTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTAt                                                                                                             <  2:800716/140‑1 (MQ=255)                               ttGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGcc                                                                                                                     <  2:1188821/129‑1 (MQ=255)                               ttGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGcc                                                                                                                     >  1:1188821/1‑129 (MQ=255)                                tgtgATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGcc                                                                                                         >  2:519257/1‑140 (MQ=255)                                tgtgATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGcc                                                                                                         >  1:171445/1‑140 (MQ=255)                                 gtgATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCa                                                                                                        <  2:171445/140‑1 (MQ=255)                                  tgATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCAt                                                                                                       <  2:161527/140‑1 (MQ=255)                                  tgATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCAt                                                                                                       <  2:1055005/140‑1 (MQ=255)                                  tgATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCAt                                                                                                       <  1:187497/140‑1 (MQ=255)                                       gACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCAtt                                                                                                      >  1:735332/1‑136 (MQ=255)                                       gACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCAtt                                                                                                      <  2:735332/136‑1 (MQ=255)                                       gACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAgg                                                                                                  >  1:698943/1‑140 (MQ=255)                                          gATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGa                                                                                               <  2:698943/140‑1 (MQ=255)                                            tGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAg                                                                                             >  2:187970/1‑140 (MQ=255)                                            tGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAg                                                                                             >  1:500538/1‑140 (MQ=255)                                            tGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAg                                                                                             <  2:421446/140‑1 (MQ=255)                                              aGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGAt                                                                                           >  2:80773/1‑140 (MQ=255)                                                      aagaaTCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGtttt                                                                                   >  1:99686/1‑140 (MQ=255)                                                         aaTCCGCCTGTCGGTTCTTCTGTCCTCGAGCGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACt                                                                                <  2:176029/140‑1 (MQ=255)                                                         aaTCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACt                                                                                <  2:650624/140‑1 (MQ=255)                                                         aaTCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACt                                                                                <  1:333764/140‑1 (MQ=255)                                                         aaTCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACt                                                                                <  2:89538/140‑1 (MQ=255)                                                         aaTCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACt                                                                                <  1:350589/140‑1 (MQ=255)                                                         aaTCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACt                                                                                <  2:945996/140‑1 (MQ=255)                                                           tCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCg                                                                              >  1:1043137/1‑140 (MQ=255)                                                           tCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCg                                                                              <  1:522053/140‑1 (MQ=255)                                                             cGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGcc                                                                            >  2:73242/1‑140 (MQ=255)                                                                  gTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGa                                                                       <  2:1043137/140‑1 (MQ=255)                                                                  gTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGa                                                                       <  1:177872/140‑1 (MQ=255)                                                                   tCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGaa                                                                      >  2:1036626/1‑140 (MQ=255)                                                                   tCGGTTCTTCTGTCCTCCAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGATGAAGATGTTGTTTTACTCGCCCCAGaa                                                                      <  2:1069928/140‑1 (MQ=255)                                                                     ggTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCTTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAaca                                                                    <  1:894449/140‑1 (MQ=255)                                                                     ggTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAaca                                                                    <  1:200841/140‑1 (MQ=255)                                                                       ttcttcTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACAcc                                                                  <  2:907764/140‑1 (MQ=255)                                                                          ttctGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCtt                                                               <  1:526081/140‑1 (MQ=255)                                                                               tCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTta                                                          <  1:62027/140‑1 (MQ=255)                                                                                ccTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACAcc                                                                  <  2:255163/131‑1 (MQ=255)                                                                                ccTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACAcc                                                                  >  1:255163/1‑131 (MQ=255)                                                                                    gAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGa                                                     <  1:716774/140‑1 (MQ=255)                                                                                         cATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACAccc                                                                 >  2:529204/1‑123 (MQ=255)                                                                                         cATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACAccc                                                                 <  1:529204/123‑1 (MQ=255)                                                                                                   atTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCttt                                      <  1:622348/140‑1 (MQ=255)                                                                                                         gCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGc                                >  2:793156/1‑140 (MQ=255)                                                                                                            aGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTgg                             >  2:17144/1‑140 (MQ=255)                                                                                                            aGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTgg                             >  1:293499/1‑140 (MQ=255)                                                                                                              tATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCg                           >  1:844730/1‑140 (MQ=255)                                                                                                                    ccGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGaaaaaa                     >  1:26213/1‑140 (MQ=255)                                                                                                                     cGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGaaaaaaa                    >  1:1187869/1‑140 (MQ=255)                                                                                                                      gtgtTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGAAAAAAAc                   <  1:426596/140‑1 (MQ=255)                                                                                                                       tgtTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGAAAAAAACt                  <  2:435649/140‑1 (MQ=255)                                                                                                                       tgtTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGAAAAAAACt                  <  1:73242/140‑1 (MQ=255)                                                                                                                       tgtTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGAAAAAAACt                  <  1:766938/140‑1 (MQ=255)                                                                                                                       tgtTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGAAAAAAACt                  <  1:17144/140‑1 (MQ=255)                                                                                                                        gtTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGAAAAAAACt                  >  1:544539/1‑139 (MQ=255)                                                                                                                        gtTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGAAAAAAACt                  <  2:544539/139‑1 (MQ=255)                                                                                                                        gtTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGAAAAAAACTg                 >  2:881413/1‑140 (MQ=255)                                                                                                                        gtTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGAAAAAAACTg                 >  2:1147571/1‑140 (MQ=255)                                                                                                                        gtTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGCATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGAAAAAAACTg                 >  1:238604/1‑140 (MQ=255)                                                                                                                                 cAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGAAAAAAACTGACTATAAAc        >  1:1022022/1‑140 (MQ=255)                                                                                                                                   ggTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGAAAAAAACTGACTATAAACtt      <  1:1147571/140‑1 (MQ=255)                                                                                                                                   ggTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGAAAAAAACTGACTATAAACtt      >  1:1139258/1‑140 (MQ=255)                                                                                                                                   ggTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGAAAAAAACTGACTATAAACtt      <  1:1060696/140‑1 (MQ=255)                                                                                                                                   ggTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGAAAAAAACTGACTATAAACtt      <  2:99686/140‑1 (MQ=255)                                                                                                                                     tGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGAAAAAAACTGACTATAAACTTCa    <  2:844730/140‑1 (MQ=255)                                                                                                                                       aTTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGAAAAAAACTGACTATAAACTTCAcc  <  2:990870/140‑1 (MQ=255)                                                                                                                                       aTTTG‑CCCCCTGCTGACTCTCAGCCAACTGCATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGAAAAAAACTGACTATAAACTTCAcc  <  2:238604/140‑1 (MQ=255)                                                                                                                                            |                                                                                                                                        ATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGCCCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGAAAAAAACTGACTATAAACTTCACC  >  NC_000913/3836390‑3836664

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑