BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,428,884	A→G	pseudogene (89/189 nt)	lomR →	Rac prophage; protein LomR_1

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,428,884	0	A	G	100.0%	393.0 / NA	104	pseudogene (89/189 nt)	lomR	Rac prophage; protein LomR_1
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (47/57); total (47/57)

Only 100 of 105 total aligned reads displayed.

TGATGATCTCATATCAGGAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAACCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCC  >  NC_000913/1428759‑1429015

tgatgaTCTCATATCAGGAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCg                                                                                                                       <  2:243975/140‑1 (MQ=255)

tgatgaTCTCATATCAGGAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCg                                                                                                                       <  1:865320/140‑1 (MQ=255)

  atgatCTCATATCAGGAACTTGTTCGCACCTTCCCAAGGGGACTACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTg                                                                                                                     <  2:1115219/140‑1 (MQ=255)

   tgatCTCATATCAGGAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTgg                                                                                                                    >  1:1009986/1‑140 (MQ=255)

     atCTCATATCAGGAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGcc                                                                                                                  <  2:1090381/140‑1 (MQ=255)

     atCTCATATCAGGAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGcc                                                                                                                  <  1:244995/140‑1 (MQ=255)

      tctcATATCAGGAACTTGTTCGCACCTTCCCAAGGGGAAAACGCAGGACGGGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGGATCTTAGCGCGACCGAATCCGTGGCCa                                                                                                                 >  2:840006/1‑140 (MQ=255)

      tctcATATCAGGAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCa                                                                                                                 <  1:486081/140‑1 (MQ=255)

      tctcATATCAGGAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCa                                                                                                                 >  2:742372/1‑140 (MQ=255)

      tctcATATCAGGAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCATGGCCa                                                                                                                 >  1:608338/1‑140 (MQ=255)

        tcATATCAGGAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCAtt                                                                                                               >  1:585674/1‑140 (MQ=255)

        tcATATCAGGAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCAtt                                                                                                               >  1:738057/1‑140 (MQ=255)

        tcATATCAGGAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCAtt                                                                                                               >  1:823829/1‑140 (MQ=255)

        tcATATCAGGAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCAtt                                                                                                               >  2:622095/1‑140 (MQ=255)

           tatCAGGAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCccgacc                                                                                                                              >  2:1165658/1‑122 (MQ=255)

           tatCAGGAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCccgacc                                                                                                                              <  1:1165658/122‑1 (MQ=255)

           tatCAGGAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTg                                                                                                                     >  1:1001271/1‑131 (MQ=255)

           tatCAGGAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTg                                                                                                                     <  2:1001271/131‑1 (MQ=255)

            atCAGGAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGGCCGACCGAATCCGTGGCCATTGata                                                                                                           <  2:823829/140‑1 (MQ=255)

            atCAGGAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTg                                                                                                                     <  1:978023/130‑1 (MQ=255)

            atCAGGAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGata                                                                                                           <  2:713820/140‑1 (MQ=255)

            atCAGGAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGata                                                                                                           <  1:157063/140‑1 (MQ=255)

            atCAGGAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGata                                                                                                           <  1:840006/140‑1 (MQ=255)

            atCAGGAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGata                                                                                                           >  1:745601/1‑140 (MQ=255)

            atCAGGAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGata                                                                                                           <  2:40210/140‑1 (MQ=255)

            atCAGGAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGata                                                                                                           <  1:1077470/140‑1 (MQ=255)

             tCAGGAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGatat                                                                                                          <  1:622095/140‑1 (MQ=255)

                 gAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTg                                                                                                                     >  1:1184517/1‑125 (MQ=255)

                 gAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTg                                                                                                                     <  2:1184517/125‑1 (MQ=255)

                 gAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGc                                                                                                                   <  1:266632/127‑1 (MQ=255)

                 gAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGc                                                                                                                   >  2:266632/1‑127 (MQ=255)

                 gAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCt                                                                                                      >  2:72020/1‑140 (MQ=255)

                 gAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCt                                                                                                      >  2:752364/1‑140 (MQ=255)

                 gAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCt                                                                                                      >  1:271338/1‑140 (MQ=255)

                 gAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCt                                                                                                      >  1:1151623/1‑140 (MQ=255)

                  aaCTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCtt                                                                                                     >  2:401766/1‑140 (MQ=255)

                     ttGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGTTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATg                                                                                                  <  2:738057/140‑1 (MQ=255)

                     ttGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATg                                                                                                  <  2:585674/140‑1 (MQ=255)

                     ttGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATg                                                                                                  <  2:638563/140‑1 (MQ=255)

                       gTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATg                                                                                                  <  2:1033279/138‑1 (MQ=255)

                       gTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATg                                                                                                  >  1:1033279/1‑138 (MQ=255)

                       gTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGaa                                                                                                >  1:513956/1‑140 (MQ=255)

                        ttCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGata                                                                                                           <  2:1098256/128‑1 (MQ=255)

                        ttCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGata                                                                                                           >  1:1098256/1‑128 (MQ=255)

                        ttCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAg                                                                                               >  2:262449/1‑140 (MQ=255)

                          cGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCAGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGc                                                                                             >  1:463057/1‑140 (MQ=255)

                               cTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCgg                                                                                        >  2:205428/1‑140 (MQ=255)

                                 tCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACTGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCa                                                                                      >  1:1084226/1‑140 (MQ=255)

                                  cccAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAg                                                                                     >  1:1049313/1‑140 (MQ=255)

                                    cAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTg                                                                                   <  1:869394/140‑1 (MQ=255)

                                       ggggAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCg                                                                                >  2:129956/1‑140 (MQ=255)

                                           aaaaCGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGa                                                                               <  2:122170/137‑1 (MQ=255)

                                           aaaaCGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGa                                                                               >  1:122170/1‑137 (MQ=255)

                                              aCGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGgcg                                                                         <  1:332505/140‑1 (MQ=255)

                                                    gacgTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGa                                                                   <  1:685008/140‑1 (MQ=255)

                                                        tGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGt                                                               <  1:1058792/140‑1 (MQ=255)

                                                                      gatgaCGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACTGTTTCATCGTGGgtgt                                                 <  2:745601/140‑1 (MQ=255)

                                                                      gatgaCGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGgtgt                                                 <  1:831186/140‑1 (MQ=255)

                                                                      gatgaCGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGgtgt                                                 <  1:1000701/140‑1 (MQ=255)

                                                                      gatgaCGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGgtgt                                                 <  1:262449/140‑1 (MQ=255)

                                                                       atgaCGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTc                                                >  1:910995/1‑140 (MQ=255)

                                                                         gaCGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCgg                                              >  1:764697/1‑140 (MQ=255)

                                                                              tCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGACCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTtata                                         >  2:1048447/1‑140 (MQ=255)

                                                                               cGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTggg                                                    <  2:794295/128‑1 (MQ=255)

                                                                               cGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTggg                                                    >  1:794295/1‑128 (MQ=255)

                                                                               cGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATaa                                        >  2:931580/1‑140 (MQ=255)

                                                                                 ccACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGt                                      <  2:1151623/140‑1 (MQ=255)

                                                                                      gCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGa                                 <  1:119509/140‑1 (MQ=255)

                                                                                      gCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGa                                 <  1:205428/140‑1 (MQ=255)

                                                                                       cAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGAt                                >  1:103272/1‑140 (MQ=255)

                                                                                          cacGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAg                             <  1:752364/140‑1 (MQ=255)

                                                                                               ctctGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAg                             >  2:116222/1‑135 (MQ=255)

                                                                                               ctctGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAg                             <  1:116222/135‑1 (MQ=255)

                                                                                               ctctGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAg                             <  2:499111/135‑1 (MQ=255)

                                                                                               ctctGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAg                             >  1:499111/1‑135 (MQ=255)

                                                                                               ctctGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAg                             >  2:330577/1‑135 (MQ=255)

                                                                                               ctctGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAg                             <  1:330577/135‑1 (MQ=255)

                                                                                               ctctGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAgg                        <  1:589434/140‑1 (MQ=255)

                                                                                                  tGGCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTaa                     <  1:1048447/140‑1 (MQ=255)

                                                                                                    gCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCTACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAaca                   <  2:1182986/140‑1 (MQ=255)

                                                                                                    gCGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAaca                   <  1:1054020/140‑1 (MQ=255)

                                                                                                     cGTGGGGAGCTGGCGTGCAGTTTAGCCCGACTGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAacac                  <  2:1084226/140‑1 (MQ=255)

                                                                                                     cGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAacac                  <  1:742372/140‑1 (MQ=255)

                                                                                                     cGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAacac                  <  2:1009986/140‑1 (MQ=255)

                                                                                                     cGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAacac                  <  2:249820/140‑1 (MQ=255)

                                                                                                     cGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAacac                  <  2:434949/140‑1 (MQ=255)

                                                                                                     cGTGGGGAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAacac                  <  2:379534/140‑1 (MQ=255)

                                                                                                         gggAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGAtt                               >  1:147533/1‑123 (MQ=255)

                                                                                                         gggAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGAtt                               <  2:147533/123‑1 (MQ=255)

                                                                                                         gggAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAacac                  <  2:637893/136‑1 (MQ=255)

                                                                                                         gggAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAacac                  >  1:637893/1‑136 (MQ=255)

                                                                                                         gggAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAacac                  >  1:389768/1‑136 (MQ=255)

                                                                                                         gggAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAgtg              >  2:538808/1‑140 (MQ=255)

                                                                                                         gggAGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAgtg              >  2:178546/1‑140 (MQ=255)

                                                                                                            aGCTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTa           >  1:817329/1‑140 (MQ=255)

                                                                                                              cTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAacac                  >  2:770210/1‑131 (MQ=255)

                                                                                                              cTGGCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAacac                  <  1:770210/131‑1 (MQ=255)

                                                                                                                ggCGTGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAgg                        <  1:1056477/123‑1 (MQ=255)

                                                                                                                    tGCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGcc   >  1:235076/1‑140 (MQ=255)

                                                                                                                     gCAGTTTAGCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGccc  <  1:1114913/140‑1 (MQ=255)

TGATGATCTCATATCAGGAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAACCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCC  >  NC_000913/1428759‑1429015

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`