Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,344,248	T→C	V102A (GTA→GCA)	lptB →	lipopolysaccharide transport system ATP binding protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,344,248	0	T	C	100.0%	273.2 / NA	72	V102A (GTA→GCA)	lptB	lipopolysaccharide transport system ATP binding protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (36/36);  total (36/36)

CAACATCATTATTGATGATGACGATATCAGTCTGCTGCCTCTGCATGCACGCGCGCGCCGCGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGTACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAAGAGTTTCACATTGAGCACCTGCGTGACAGCATGGGGCAGTCACTCTCCGGGGGTGAACGTCGCCGTGTA  >  NC_000913/3344117‑3344381                                                                                                                                    |                                                                                                                                      cAACATCATTATTGATGATGACGATATCAGTCTGCTGCCTCTGCATGCACGCGCGCGCCGCGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCaaa                                                                                                                               <  2:138265/140‑1 (MQ=255)   aCATCATTATTGATGATGACGATATCAGTCTGCTGCCTCTGCATGCACGCGCGCGCCGCGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAAtt                                                                                                                             >  1:333276/1‑140 (MQ=255)      tcatTATTGATGATGACGATATCAGTCTGCTGCCTCTGCATGCACGCGCGCGCCGCGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGt                                                                                                                          <  2:694845/140‑1 (MQ=255)                tgatgaCGATATCAGTCTGCTGCCTCTGCATGCACGCGCGCGCCGCGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGt                                                                                                                <  2:614475/140‑1 (MQ=255)                tgatgaCGATATCAGTCTGCTGCCTCTGCATGCACGCGCGCGCCGCGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGt                                                                                                                <  2:657212/140‑1 (MQ=255)                tgatgaCGATATCAGTCTGCTGCCTCTGCATGCACGCGCGCGCCGCGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGt                                                                                                                <  2:894100/140‑1 (MQ=255)                 gatgaCGATATCAGTCTGCTGCCTCTGCATGCACGCGCGCGCCGCGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTc                                                                                                               >  1:1028695/1‑140 (MQ=255)                   tgaCGATATCAGTCTGCTGCCTCTGCATGCACGCGCGCGCCGCGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTctg                                                                                                             >  1:656320/1‑140 (MQ=255)                    gaCGATATCAGTCTGCTGCCTCTGCATGCACGCGCGCGCCGCGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTctgc                                                                                                            >  2:1113039/1‑140 (MQ=255)                     aCGATATCAGTCTGCTGCCTCTGCATGCACGCGCGCGCCGCGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTctgct                                                                                                           <  1:9887/140‑1 (MQ=255)                      cGATATCAGTCTGCTGCCTCTGCATGCACGCGCGCGCCGCGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTctgctg                                                                                                          >  2:94158/1‑140 (MQ=255)                         tatCAGTCTGCTGCCTCTGCATGCACGCGCGCGCCGCGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGaac                                                                                                       <  2:168323/140‑1 (MQ=255)                         tatCAGTCTGCTGCCTCTGCATGCACGCGCGCGCCGCGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGaac                                                                                                       <  1:94158/140‑1 (MQ=255)                         tatCAGTCTGCTGCCTCTGCATGCACGCGCGCGCCGCGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGaac                                                                                                       <  2:291861/140‑1 (MQ=255)                         tatCAGTCTGCTGCCTCTGCATGCACGCGCGCGCCGCGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGaac                                                                                                       <  1:858130/140‑1 (MQ=255)                                 tgctgcCTCTGCATGCACGCGCGCGCCGCGGTATCGGCTATCCGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGaa                                                                                               >  2:539051/1‑140 (MQ=255)                                   ctgcCTCTGCATGCACGCGCGCGCCGCGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGa                                                                                             >  2:655282/1‑140 (MQ=255)                                   ctgcCTCTGCATGCACGCGCGCGCCGCGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGa                                                                                             >  1:1008458/1‑140 (MQ=255)                                   ctgcCTCTGCATGCACGCGCGCGCCGCGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGa                                                                                             >  1:501667/1‑140 (MQ=255)                                   ctgcCTCTGCATGCACGCGCGCGCCGCGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGa                                                                                             >  1:10794/1‑140 (MQ=255)                                        tctGCATGCACGCGCGCGCCGCGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGaac                                                                                                       <  1:369992/125‑1 (MQ=255)                                        tctGCATGCACGCGCGCGCCGCGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGaac                                                                                                       >  2:369992/1‑125 (MQ=255)                                        tctGCATGCACGCGCGCGCCGCGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACcgcg                                                                                        <  1:1113039/140‑1 (MQ=255)                                           gcatgcaCGCGCGCGCCGCGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGa                                                                                     <  1:74584/140‑1 (MQ=255)                                             atgcaCGCGCGCGCCGCGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAAc                                                                                   >  1:399155/1‑140 (MQ=255)                                                caCGCGCGCGCCGCGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAg                                                                                >  1:1118425/1‑140 (MQ=255)                                                caCGCGCGCGCCGCGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAg                                                                                <  1:167249/140‑1 (MQ=255)                                                 aCGCGCGCGCCGCGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGc                                                                               <  2:399155/140‑1 (MQ=255)                                                 aCGCGCGCGCCGCGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGc                                                                               <  2:1028695/140‑1 (MQ=255)                                                    cgcgcgcCGCGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGa                                                                            >  1:809581/1‑140 (MQ=255)                                                    cgcgcgcCGCGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGa                                                                            >  1:511175/1‑140 (MQ=255)                                                    cgcgcgcCGCGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGa                                                                            >  1:203832/1‑140 (MQ=255)                                                    cgcgcgcCGCGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGa                                                                            >  2:240097/1‑140 (MQ=255)                                                     gcgcgcCGCGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGAt                                                                           >  2:396859/1‑140 (MQ=255)                                                       gcgcCGCGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATgg                                                                         >  1:1077644/1‑140 (MQ=255)                                                         gccgcGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGaa                                                                       <  2:947492/140‑1 (MQ=255)                                                           cgcgGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAaga                                                                     >  1:145576/1‑140 (MQ=255)                                                             cgGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAAGAGt                                                                   >  2:853501/1‑140 (MQ=255)                                                               gTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCTAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAAGAGttt                                                                 <  2:1118425/140‑1 (MQ=255)                                                                 aTCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGTGCGAACGAGCTGATGGAAGAGTTTca                                                               <  2:295762/140‑1 (MQ=255)                                                                 aTCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAAGAGTTTca                                                               <  2:10794/140‑1 (MQ=255)                                                                 aTCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAAGAGTTTca                                                               <  2:501667/140‑1 (MQ=255)                                                                 aTCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAAGAGTTTca                                                               <  2:145576/140‑1 (MQ=255)                                                                 aTCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAAGAGTTTca                                                               <  2:1008458/140‑1 (MQ=255)                                                                     gCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAAGAGTTTCACAtt                                                           >  2:1113345/1‑140 (MQ=255)                                                                          cTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAAGAGTTTCACATTGAGCa                                                      >  2:508963/1‑140 (MQ=255)                                                                           cgCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAAGAGTTTCACATTGAGCAc                                                     <  1:539051/139‑1 (MQ=255)                                                                            gCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAAGAGTTTCACATTGAGCAcc                                                    <  2:1015381/140‑1 (MQ=255)                                                                              cacaGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAAGAGt                                                                   >  2:933856/1‑123 (MQ=255)                                                                              cacaGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAAGAGt                                                                   <  1:933856/123‑1 (MQ=255)                                                                                   gAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAAGAGTTTCACATTGAGCACCTGCGTGa                                             >  2:703754/1‑140 (MQ=255)                                                                                   gAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAAGAGTTTCACATTGAGCACCTGCGTGa                                             <  2:1188734/140‑1 (MQ=255)                                                                                     aGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAAGAGTTTCACATTGAGCACCTGCGt                                               <  1:1188638/136‑1 (MQ=255)                                                                                     aGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAAGAGTTTCACATTGAGCACCTGCGt                                               >  2:1188638/1‑136 (MQ=255)                                                                                     aGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAAGAGTTTCACATTGAGCACCTGCGTGACa                                           >  1:1158597/1‑140 (MQ=255)                                                                                           cATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAAGAGTTTCACATTGAGc                                                       >  2:287808/1‑122 (MQ=255)                                                                                           cATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAAGAGTTTCACATTGAGc                                                       <  1:287808/122‑1 (MQ=255)                                                                                             ttttCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAAGAGTTTCACATTGAGCACCTGCGTGACAGCATgggg                                   >  1:428671/1‑140 (MQ=255)                                                                                                 ccGTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAAGAGTTTCACATTGAGCACCTGCGTGACAGCATGGGGCAGt                               <  2:1077644/140‑1 (MQ=255)                                                                                                   gTCGCCTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAAGAGTTTCACATTGAGCACCTGCGTGACAGCATGGGGCAGTCa                             >  1:1130447/1‑140 (MQ=255)                                                                                                       ccTCAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAAGAGTTTCACATTGAGCACCTGCGTGACAGCATGGGGCAGTCActct                         >  2:170185/1‑140 (MQ=255)                                                                                                          cAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAAGAGTTTCACATTGAGCACCTGCGTGACAGCATGGGGCAGTCACTCTCCg                      <  2:1148406/140‑1 (MQ=255)                                                                                                          cAGCGTTTACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAAGAGTTTCACATTGAGCACCTGCGTGACAGCATGGGGCAGTCACTCTCCg                      >  1:1080970/1‑140 (MQ=255)                                                                                                                 tACGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAAGAGTTTCACATTGAGCACCTGCGTGACAGCATGGGGCAGTCACTCTCCGGGGGTGa               >  2:315555/1‑140 (MQ=255)                                                                                                                  aCGATAACCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAAGAGTTTCACATTGAGCACCTGCGTGACAGCATGGGGCAGTCACTCTCCGGGGGTGaa              >  2:739456/1‑140 (MQ=255)                                                                                                                       aaCCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAAGAGTTTCACATTGAGCACCTGCGTGACAGCATGGGGCAGTCACTCTCCGGGGGTGAACGTCg         <  1:739456/140‑1 (MQ=255)                                                                                                                        aCCTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAAGAGTTTCACATTGAGCACCTGCGTGACAGCATGGGGCAGTCACTCTCCGGGGGTGAACGTCGc        <  2:1080970/140‑1 (MQ=255)                                                                                                                         ccTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAAGAGTTTCACATTGAGCACCTGCGTGACAGCATGGGGCAGTCACTCTCCGGGGGTGAACGTCg         <  1:744573/138‑1 (MQ=255)                                                                                                                         ccTGATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAAGAGTTTCACATTGAGCACCTGCGTGACAGCATGGGGCAGTCACTCTCCGGGGGTGAACGTCg         >  2:744573/1‑138 (MQ=255)                                                                                                                            gATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAAGAGTTTCACATTGAGCACCTGCGTGACAGCATGGGGCAGTCACTCTCCGGGGGTGAACGTCGCCgtg    <  2:511175/140‑1 (MQ=255)                                                                                                                            gATGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAAGAGTTTCACATTGAGCACCTGCGTGACAGCATGGGGCAGTCACTCTCCGGGGGTGAACGTCGCCgtg    <  1:170185/140‑1 (MQ=255)                                                                                                                              tGGCGGCACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAAGAGTTTCACATTGAGCACCTGCGTGACAGCATGGGGCAGTCACTCTCCGGGGGTGAACGTCGCCGTGTa  >  2:657644/1‑140 (MQ=255)                                                                                                                                    |                                                                                                                                      CAACATCATTATTGATGATGACGATATCAGTCTGCTGCCTCTGCATGCACGCGCGCGCCGCGGTATCGGCTATCTGCCACAGGAAGCCTCCATTTTCCGTCGCCTCAGCGTTTACGATAACCTGATGGCGGTACTGCAAATTCGTGACGACTTGTCTGCTGAACAACGTGAAGACCGCGCGAACGAGCTGATGGAAGAGTTTCACATTGAGCACCTGCGTGACAGCATGGGGCAGTCACTCTCCGGGGGTGAACGTCGCCGTGTA  >  NC_000913/3344117‑3344381

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑