Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,531,315	A→C	pseudogene (730/1054 nt)	yncI →	putative transposase YncI

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,531,315	0	A	C	100.0%	289.4 / NA	82	pseudogene (730/1054 nt)	yncI	putative transposase YncI
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (36/46);  total (36/46)

GGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTAACGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGAAGGTGTAAGCATCCGATATTATATTTCATCAAAGGAT  >  NC_000913/1531184‑1531450                                                                                                                                    |                                                                                                                                        ggAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTg                                                                                                                                   <  1:273573/138‑1 (MQ=255) ggAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTg                                                                                                                                   >  2:273573/1‑138 (MQ=255)   aaaTTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTATGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACt                                                                                                                               >  2:1321889/1‑140 (MQ=255)     aTTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACttt                                                                                                                             >  1:817260/1‑140 (MQ=255)      ttACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACtttt                                                                                                                            <  2:668853/140‑1 (MQ=255)          atcatGCATTCAAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGa                                                                                                                        >  1:324513/1‑140 (MQ=255)               gCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTg                                                                                                                   >  2:176202/1‑140 (MQ=255)               gCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTg                                                                                                                   >  2:278342/1‑140 (MQ=255)                cATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGa                                                                                                                  >  2:1411720/1‑140 (MQ=255)                cATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGa                                                                                                                  >  2:546054/1‑140 (MQ=255)                cATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACATTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGa                                                                                                                  >  1:1050582/1‑140 (MQ=255)                  ttCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAAt                                                                                                                <  2:13452/140‑1 (MQ=255)                  ttCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAAt                                                                                                                <  2:1491778/140‑1 (MQ=255)                      aGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGa                                                                                                            >  1:626326/1‑140 (MQ=255)                        gAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAAt                                                                                                          >  2:856212/1‑140 (MQ=255)                        gAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAAt                                                                                                          >  2:696843/1‑140 (MQ=255)                           aaaTTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGa                                                                                                       <  2:1477119/140‑1 (MQ=255)                           aaaTTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGa                                                                                                       <  1:1170163/140‑1 (MQ=255)                            aaTTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGaa                                                                                                      <  2:1211518/140‑1 (MQ=255)                            aaTTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGaa                                                                                                      <  2:817260/140‑1 (MQ=255)                               ttCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAggg                                                                                                   <  2:21911/140‑1 (MQ=255)                                     tAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTaaa                                                                                             >  2:1502996/1‑140 (MQ=255)                                         tgtgTTTTCTAATTATAAAGGCGATTCGTTTAGTATGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAg                                                                                         <  1:1321889/140‑1 (MQ=255)                                           tgtTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCt                                                                                       <  1:1024976/140‑1 (MQ=255)                                           tgtTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCt                                                                                       <  2:148993/140‑1 (MQ=255)                                           tgtTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCt                                                                                       >  1:567029/1‑140 (MQ=255)                                           tgtTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCt                                                                                       <  2:1361894/140‑1 (MQ=255)                                                   aaTTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAg                                                                               <  1:517787/140‑1 (MQ=255)                                                   aaTTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAg                                                                               <  1:1502996/140‑1 (MQ=255)                                                     ttATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCa                                                                             <  1:1207367/140‑1 (MQ=255)                                                       ataAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCAtt                                                                           >  1:667962/1‑140 (MQ=255)                                                             gCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCAtt                                                                     <  2:626326/140‑1 (MQ=255)                                                                aTTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAg                                                                  >  1:1230197/1‑140 (MQ=255)                                                                aTTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAg                                                                  >  1:737386/1‑140 (MQ=255)                                                                 ttCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAgg                                                                 <  1:278342/140‑1 (MQ=255)                                                                 ttCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAgg                                                                 <  1:196100/140‑1 (MQ=255)                                                                 ttCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAgg                                                                 <  1:176202/140‑1 (MQ=255)                                                                  tCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACAGGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAGTTCTGATGGTAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGc                                                                >  2:96127/1‑140 (MQ=255)                                                                       tAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCagaag                                                           >  2:1256665/1‑140 (MQ=255)                                                                       tAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCagaag                                                           >  2:1143389/1‑140 (MQ=255)                                                                        aGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCagaaga                                                          <  1:1474120/140‑1 (MQ=255)                                                                               aGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAagaaga                                                   >  2:536799/1‑140 (MQ=255)                                                                               aGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAagaaga                                                   >  2:1026425/1‑140 (MQ=255)                                                                                    aTAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAAt                                              >  2:1461701/1‑140 (MQ=255)                                                                                    aTAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAAt                                              <  1:536799/140‑1 (MQ=255)                                                                                         tCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATcagca                                         <  1:934735/140‑1 (MQ=255)                                                                                          cATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATcagcag                                        <  2:838523/140‑1 (MQ=255)                                                                                          cATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATcagcag                                        <  2:904556/140‑1 (MQ=255)                                                                                          cATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATcagcag                                        <  1:1143389/140‑1 (MQ=255)                                                                                           aTGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATcagcag                                        >  1:232223/1‑139 (MQ=255)                                                                                           aTGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATcagcag                                        <  2:242832/139‑1 (MQ=255)                                                                                           aTGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATcagcag                                        <  2:232223/139‑1 (MQ=255)                                                                                           aTGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATcagcag                                        >  1:242832/1‑139 (MQ=255)                                                                                           aTGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGa                                       <  2:737386/140‑1 (MQ=255)                                                                                           aTGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGa                                       <  2:1342127/140‑1 (MQ=255)                                                                                           aTGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGa                                       >  2:772732/1‑140 (MQ=255)                                                                                           aTGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGa                                       <  2:567029/140‑1 (MQ=255)                                                                                           aTGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGa                                       >  1:1342127/1‑140 (MQ=255)                                                                                           aTGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGa                                       >  2:541945/1‑140 (MQ=255)                                                                                           aTGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGa                                       <  1:198013/140‑1 (MQ=255)                                                                                           aTGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGa                                       >  2:198013/1‑140 (MQ=255)                                                                                           aTGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGa                                       <  1:696843/140‑1 (MQ=255)                                                                                                 gaaaagaaaCACGTTTGCATATTGTCAGTAACGTACCGCCTGATCTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGAAGgtgt                                 <  2:1409211/140‑1 (MQ=255)                                                                                                  aaaagaaaCACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGAAGGTGTa                                <  1:238709/140‑1 (MQ=255)                                                                                                  aaaagaaaCACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGAAGGTGTa                                >  1:150534/1‑140 (MQ=255)                                                                                                   aaagaaaCACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATcagca                                         >  1:849396/1‑130 (MQ=255)                                                                                                   aaagaaaCACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATcagca                                         <  2:849396/130‑1 (MQ=255)                                                                                                     agaaaCACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGAAGGTGTAAGc                             <  1:441740/140‑1 (MQ=255)                                                                                                        aaCACGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGAAGGTGTAAGCATc                          <  1:1256665/140‑1 (MQ=255)                                                                                                         acacGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGAAGGTGTa                                <  2:952939/133‑1 (MQ=255)                                                                                                         acacGTTTGCATATTGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGAAGGTGTa                                >  1:952939/1‑133 (MQ=255)                                                                                                                       tGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGAAGGTGTAAGCATc                          <  2:1161822/125‑1 (MQ=255)                                                                                                                       tGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGAAGGTGTAAGCATc                          >  1:1161822/1‑125 (MQ=255)                                                                                                                       tGTCAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGAAGGTGTAAGCATCCGATATTATATTtca           >  1:1030568/1‑140 (MQ=255)                                                                                                                          cAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGAAGGTGTAAGCATCCGATATTATATTtcatca        <  2:667962/140‑1 (MQ=255)                                                                                                                          cAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGAAGGTGTAAGCATCCGATATTATATTtcatca        <  2:1230197/140‑1 (MQ=255)                                                                                                                          cAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGAAGGTGTAAGCATCCGATATTATATTtcatca        <  2:1030568/140‑1 (MQ=255)                                                                                                                          cAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGAAGGTGTAAGCATCCGATATTATATTtcatca        <  2:1020686/140‑1 (MQ=255)                                                                                                                          cAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGAAGGTGTAAGCATCCGATATTATATTtcatca        <  1:541945/140‑1 (MQ=255)                                                                                                                          cAGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGAAGGTGTAAGCATCCGATATTATATTtcatca        <  2:970426/140‑1 (MQ=255)                                                                                                                           aGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGAAGGTGTAAGCATCCGATATTATATTTCATCaa       >  2:486172/1‑140 (MQ=255)                                                                                                                           aGTAACGTACCGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGAAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGAAGGTGTAAGCATCCGATATTATATTTCATCaa       >  1:1183499/1‑140 (MQ=255)                                                                                                                                cgtaccgCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGAAGGTGTAAGCATCCGATATTATATTTCATCGAAGGat  >  2:1514428/1‑140 (MQ=255)                                                                                                                                    |                                                                                                                                        GGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAAGTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTAACGCCTGAACTTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGTAGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGAAGGTGTAAGCATCCGATATTATATTTCATCAAAGGAT  >  NC_000913/1531184‑1531450

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑