Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	289,143	A→G	V7A (GTT→GCT)	xynR ←	CP4‑6 prophage; DNA‑binding transcriptional repressor XynR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	289,143	0	A	G	100.0%	321.8 / NA	90	V7A (GTT→GCT)	xynR	CP4‑6 prophage; DNA‑binding transcriptional repressor XynR
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (50/40);  total (50/40)

AGCCGTGAAGCTGCAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTCAGCCCCATCAGTTTGCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAACAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGG  >  NC_000913/289009‑289272                                                                                                                                       |                                                                                                                                  aGCCGTGAAGCTGCAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTCAGCCCCATCAGTTTGCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGAc                                                                                                                              >  2:1087154/1‑140 (MQ=255)   ccGTGAAGCTGCAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTCAGCCCCATCAGTTTGCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTg                                                                                                                            >  1:1410323/1‑140 (MQ=255)    cGTGAAGCTGCAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTCAGCCCCATCAGTTTGCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGa                                                                                                                           <  2:996064/140‑1 (MQ=255)    cGTGAAGCTGCAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTCAGCCCCATCAGTTTGCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGa                                                                                                                           <  2:1204142/140‑1 (MQ=255)      tGAAGCTGCAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTCAGCCCCATCAGTTTGCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCCCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGaat                                                                                                                         >  1:270802/1‑140 (MQ=255)       gAAGCTGCAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTCAGCCCCATCAGTTTGCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGaata                                                                                                                        <  1:1087154/140‑1 (MQ=255)       gAAGCTGCAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTCAGCCCCATCAGTTTGCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGaata                                                                                                                        >  2:57117/1‑140 (MQ=255)        aaGCTGCAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTCAGCCCCATCAGTTTGCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGaataa                                                                                                                       >  1:506724/1‑140 (MQ=255)        aaGCTGCAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTCAGCCCCATCAGTTTGCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGaataa                                                                                                                       >  1:911194/1‑140 (MQ=255)        aaGCTGCAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTCAGCCCCATCAGTTTGCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGaataa                                                                                                                       >  1:1118382/1‑140 (MQ=255)         aGCTGCAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTCAGCCCCATCAGTTTGCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGaataat                                                                                                                      <  1:168080/140‑1 (MQ=255)           cTGCAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTCAGCCCCATCAGTTTGCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCg                                                                                                                    >  1:1132553/1‑140 (MQ=255)              cAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTCAGCCCCATCAGTTTGCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCa                                                                                                                 <  2:1156708/140‑1 (MQ=255)              cAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTCAGCCCCATCAGTTTGCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCa                                                                                                                 <  1:817086/140‑1 (MQ=255)                        agcagcGAGTGGAGGGTACTCTTGCTCAGCCCCATCAGTTTGCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGc                                                                                                       >  1:173168/1‑140 (MQ=255)                             cGAGTGGAGGGTACTCTTGCTCAGCCCCATCAGTTTGCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTc                                                                                                  >  1:1505243/1‑140 (MQ=255)                               aGTGGAGGGTACTCTTGCTCAGCCCCATCAGTTTGCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCa                                                                                                <  2:1505243/140‑1 (MQ=255)                               aGTGGAGGGTACTCTTGCTCAGCCCCATCAGTTTGCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCa                                                                                                <  2:1132553/140‑1 (MQ=255)                                  ggAGGGTACTCTTGCTCAGCCCCATCAGTTTGCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGc                                                                                             <  1:188741/140‑1 (MQ=255)                                         aCTCTTGCTCAGCCCCATCAGTTTGCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAAtt                                                                                      >  1:1225492/1‑140 (MQ=255)                                          ctctTGCTCAGCCCCATCAGTTTGCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGc                                                                                                       <  2:648533/122‑1 (MQ=255)                                          ctctTGCTCAGCCCCATCAGTTTGCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGc                                                                                                       >  1:648533/1‑122 (MQ=255)                                             ttGCTCAGCCCCATCAGTTTGCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAgg                                                                                  <  2:892922/140‑1 (MQ=255)                                              tGCTCAGCCCCATCAGTTTGCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGc                                                                                 <  1:1061242/140‑1 (MQ=255)                                                cTCAGCCCCATCAGTTTGCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGa                                                                               >  1:1201280/1‑140 (MQ=255)                                                cTCAGCCCCATCAGTTTGCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGa                                                                               >  1:604117/1‑140 (MQ=255)                                                     ccccATCAGTTTGCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACg                                                                          >  2:470101/1‑140 (MQ=255)                                                     ccccATCAGTTTGCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACg                                                                          >  2:1445147/1‑140 (MQ=255)                                                     ccccATCAGTTTGCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACg                                                                          >  1:252187/1‑140 (MQ=255)                                                     ccccATCAGTTTGCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACg                                                                          >  1:57244/1‑140 (MQ=255)                                                     ccccATCAGTTTGCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACg                                                                          >  1:299141/1‑140 (MQ=255)                                                          tCAGTTTGCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCt                                                                     >  2:80089/1‑140 (MQ=255)                                                               ttGCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTc                                                                >  2:192971/1‑140 (MQ=255)                                                               ttGCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTc                                                                >  2:1159479/1‑140 (MQ=255)                                                                 gCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCgg                                                              <  1:80089/140‑1 (MQ=255)                                                                      tGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGa                                                         >  1:1483946/1‑140 (MQ=255)                                                                      tGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGa                                                         >  1:305182/1‑140 (MQ=255)                                                                       gTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGaa                                                        <  2:506724/140‑1 (MQ=255)                                                                          ggTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGaaaaa                                                     >  2:936072/1‑140 (MQ=255)                                                                          ggTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGaaaaa                                                     >  2:15581/1‑140 (MQ=255)                                                                           gTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAAt                                                    <  1:990486/140‑1 (MQ=255)                                                                            tGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATc                                                   >  1:886499/1‑140 (MQ=255)                                                                                  tAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGaa                                             >  1:417096/1‑140 (MQ=255)                                                                                   aaGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGaaa                                            <  2:604117/140‑1 (MQ=255)                                                                                   aaGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGaaa                                            <  2:911194/140‑1 (MQ=255)                                                                                   aaGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGaaa                                            <  2:1201280/140‑1 (MQ=255)                                                                                    aGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAAt                                           >  1:554272/1‑140 (MQ=255)                                                                                     gCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATg                                          >  1:516812/1‑140 (MQ=255)                                                                                      cTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATgg                                         >  2:644510/1‑140 (MQ=255)                                                                                        cGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAg                                       >  2:920433/1‑140 (MQ=255)                                                                                         ggTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCGCGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGc                                      >  2:1328338/1‑140 (MQ=255)                                                                                         ggTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGc                                      >  1:240094/1‑140 (MQ=255)                                                                                         ggTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGc                                      <  2:1449138/140‑1 (MQ=255)                                                                                         ggTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGc                                      >  1:1449138/1‑140 (MQ=255)                                                                                          gTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGcc                                     >  1:842942/1‑140 (MQ=255)                                                                                          gTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGcc                                     >  1:156832/1‑140 (MQ=255)                                                                                          gTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGcc                                     >  2:68606/1‑140 (MQ=255)                                                                                          gTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGc                                      <  1:415971/139‑1 (MQ=255)                                                                                          gTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGc                                      >  2:415971/1‑139 (MQ=255)                                                                                           tGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCg                                    <  1:470101/140‑1 (MQ=255)                                                                                           tGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCg                                    <  2:911494/140‑1 (MQ=255)                                                                                            ggCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCgg                                   <  2:173168/140‑1 (MQ=255)                                                                                            ggCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCgg                                   <  1:879963/140‑1 (MQ=255)                                                                                              ccTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGgtg                                 <  2:1118382/140‑1 (MQ=255)                                                                                              ccTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGgtg                                 <  2:554272/140‑1 (MQ=255)                                                                                               cTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGgtgt                                <  1:68606/140‑1 (MQ=255)                                                                                                tGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGtt                               >  1:436528/1‑140 (MQ=255)                                                                                                  cTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTtct                             <  1:1097569/140‑1 (MQ=255)                                                                                                  cTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTtct                             <  1:644510/140‑1 (MQ=255)                                                                                                  cTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCCGCCTAATGCTGGCATGTCCACGGTGGAATTAAGGCGAAAACGTTCCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTtct                             <  2:960055/140‑1 (MQ=255)                                                                                                   tCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTtctc                            >  1:1190273/1‑140 (MQ=255)                                                                                                      ttGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGACTAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTtctccct                         <  2:1410323/140‑1 (MQ=255)                                                                                                      ttGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTtctccct                         <  2:252187/140‑1 (MQ=255)                                                                                                      ttGAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTtctccct                         <  2:299141/140‑1 (MQ=255)                                                                                                        gAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTtctccctct                       <  1:57117/140‑1 (MQ=255)                                                                                                        gAACAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTtctccctct                       <  1:1159479/140‑1 (MQ=255)                                                                                                          aCAGGTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTtctccctctcc                     <  2:516812/140‑1 (MQ=255)                                                                                                             ggTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTTCTCCCTCTCCCtg                  >  2:872718/1‑140 (MQ=255)                                                                                                              gTCGAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTTCTCCCTCTCCCtgt                 >  2:830754/1‑140 (MQ=255)                                                                                                                 gAGGATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTTCTCCCTCTCCCTGTggg              <  2:417096/140‑1 (MQ=255)                                                                                                                   ggATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTTCTCCCTCTCCCTGTGGgag            <  2:1225492/140‑1 (MQ=255)                                                                                                                   ggATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTTCTCCCTCTCCCTGTGGgag            >  1:956006/1‑140 (MQ=255)                                                                                                                   ggATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTTCTCCCTCTCCCTGTGGga             <  2:102288/139‑1 (MQ=255)                                                                                                                   ggATCTGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTTCTCCCTCTCCCTGTGGga             >  1:102288/1‑139 (MQ=255)                                                                                                                        tGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTTCTCCCTCTCCCTGTGGga             >  1:961289/1‑134 (MQ=255)                                                                                                                        tGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTTCTCCCTCTCCCTGTGGga             <  2:961289/134‑1 (MQ=255)                                                                                                                        tGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTTCTCCCTCTCCCTGTGGGAGAGGGc       <  2:436528/140‑1 (MQ=255)                                                                                                                        tGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTTCTCCCTCTCCCTGTGGGAGAGGGc       >  1:696299/1‑140 (MQ=255)                                                                                                                        tGCAACGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTTCTCCCTCTCCCTGTGGGAGAGGGc       >  1:638742/1‑140 (MQ=255)                                                                                                                             cGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTTCTCCCTCTCCCTGTGGGAGAGGGCCgggg  >  2:1173576/1‑140 (MQ=255)                                                                                                                             cGCACGTTCAGCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTTCTCCCTCTCCCTGTGGGAGAGGGCCgggg  >  1:175549/1‑140 (MQ=255)                                                                                                                                       |                                                                                                                                  AGCCGTGAAGCTGCAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTCAGCCCCATCAGTTTGCTGATGTCGGTGATCTTAAGCTCGGTGGCCTGCTCGTTGAACAGGTCGAGGATCTGCAACGCACGTTCAACAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGG  >  NC_000913/289009‑289272

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑