| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,185,875 | (G)7→8 | intergenic (‑79/‑42) | rcnR ← / → rcnA | DNA‑binding transcriptional repressor RcnR/Ni(2(+))/Co(2(+)) exporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,185,868 | 1 | . | G | 95.5% | 141.1 / 0.1 | 44 | intergenic (‑72/‑49) | rcnR/rcnA | DNA‑binding transcriptional repressor RcnR/Ni(2(+))/Co(2(+)) exporter |
| Reads supporting (aligned to +/- strand): ref base . (2/0); new base G (25/17); total (27/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.15e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.94e-01 | |||||||||||
ACGACCTGGCCCTGAATCTTACTGGCACGCGCTTTCAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑T‑GGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCT > NC_000913/2185729‑2186002 | aCGACCTGGCCCTGAATCTTACTGGCACGCGCTTTCAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑t < 2:777258/140‑1 (MQ=255) cTGGCCCTAAATCTTACTGGCACGCGCTTTCAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑T‑gggg‑g < 2:285517/140‑1 (MQ=255) tGGCCCTGAATCTTACTGGCACGCGCTTTCAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGCTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑T‑gggg‑gg < 1:1222347/140‑1 (MQ=255) ccTGAATCTTACTGGCGCGCGCTTTCAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAAGAGCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑T‑gggg‑ggggag < 1:1316111/140‑4 (MQ=255) ccTGAATCTTACTGGCACGCGCTTTCAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCAGTATTAATCTAGTGGGGGGTAGTATCAGGTAC‑T‑gggg‑ggggag < 2:918298/140‑4 (MQ=255) aaTCTTACTGGCACGCGCTTTCAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TGGGGG‑GGGAGTAGa > 2:1227065/1‑140 (MQ=255) gCACGCGCTTTCAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAG‑TGGGGG‑GGGAGTAGAATCAGATTGc < 1:747073/140‑1 (MQ=255) gCACGCGCTTTCAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TGGGGG‑GGGAGTAGAATCAGATTGc > 2:545231/1‑140 (MQ=255) gCACGCGCTTTCAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TGGGGG‑GGGAGTAGAATCAGATTGc < 1:369265/140‑1 (MQ=255) cgcgCTTTCAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑T‑gggg‑ggggag > 1:170497/1‑120 (MQ=255) cgcgCTTTCAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑T‑gggg‑ggggag < 2:170497/123‑4 (MQ=255) tCAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATa < 2:1032284/140‑1 (MQ=255) aGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACt < 1:1241729/140‑1 (MQ=255) tCTGTTTATCACGGATTGTATGAGCAAGCGCAAAACCTGGTTAACAAGAATATGAAAAATGATAGCACTGTTATGCGTATGGGGGGTAGTAGCAGGGGG‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGa < 1:1227065/140‑1 (MQ=255) tCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TGGGGG‑GGGAGGAGAATCAGATTGCCGAATTAATACTAAGa > 1:681034/1‑140 (MQ=255) tGTTTATCACGGATTGTATGAGACCTGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGCAC‑TGGGGG‑GGGAGAAGAATCAGATTGCCGAATTAATACTAAGAat > 2:271164/1‑140 (MQ=255) aTTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGAc > 2:1265306/1‑140 (MQ=255) agaCATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTa > 1:1299443/1‑140 (MQ=255) aCATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACa > 1:49228/1‑140 (MQ=255) aTGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAAc > 1:1191099/1‑140 (MQ=255) ggCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAActc > 2:611677/1‑140 (MQ=255) ggCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑T‑GGGGTGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAActc > 2:407354/1‑140 (MQ=255) ggCAACACCTGGATAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGATAGTATCGGGTAT‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAActc < 2:679026/140‑1 (MQ=255) cacCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTcttctt > 1:1246693/1‑140 (MQ=255) acCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCttcttc > 2:1265710/1‑140 (MQ=255) aacTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCttcttc < 2:67505/138‑1 (MQ=255) aGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACg > 1:969913/1‑140 (MQ=255) atGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTgg < 2:49228/140‑1 (MQ=255) tGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGt < 1:703918/140‑1 (MQ=255) tGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGt < 1:1265306/140‑1 (MQ=255) aaaaaTCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGttc > 1:359273/1‑140 (MQ=255) aTCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCa > 2:832731/1‑140 (MQ=255) aTCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCa > 1:195644/1‑140 (MQ=255) aTCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑T‑GGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCAt > 1:172020/1‑140 (MQ=255) cATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATc < 1:611677/140‑1 (MQ=255) aTAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATcc > 2:1199566/1‑140 (MQ=255) cACTTTTAATCTACTGGGGGGTAGTAACAGGTAC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAg < 1:294396/140‑1 (MQ=255) cggaTTAATGTAGTTGGGGGTTTTTTCCGGTTCGT‑GGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAgc < 2:659537/137‑1 (MQ=255) cTATTAATCTACTGCGGTGTAGTATCAGGTTC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTAATATCATGACCGAATTTACCACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAgcg < 2:1246693/140‑1 (MQ=255) cTATTAAGCTACTGGGGGGTAGTATCAGGTAC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAgcg < 1:674242/140‑1 (MQ=255) tATTAATCTACTGGGGGGTAGTATCAGGTAC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAgcgc > 1:262190/1‑140 (MQ=255) gccagtgtACTGGGGGGTTATAACAAGTAC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGcc < 2:471294/133‑1 (MQ=255) cTGGGGGGTAGTATCAGGTAC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACtt > 2:348493/1‑140 (MQ=255) cTGGGGGGTAGTATCAGGTAC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACtt > 1:1043284/1‑140 (MQ=255) ggggggTAGTATCAGGTAC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACtctg > 1:659537/1‑137 (MQ=255) ggggggTAGTATCAGGTAC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTgg > 2:1311229/1‑140 (MQ=255) ggggggTAGTATCAGGTAC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTgg > 2:1051720/1‑140 (MQ=255) ggTAGTATCAGGTAC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTggctgt > 1:471294/1‑136 (MQ=255) tagtaTCAGGTAC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCAt > 2:530504/1‑125 (MQ=255) tagtaTCAGGTAC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCAt < 1:530504/125‑1 (MQ=255) gtaTCAGGTAC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTc > 1:630467/1‑140 (MQ=255) aTCAGGTAC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCAt < 2:1191099/140‑1 (MQ=255) aTCAGGTAC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCAt < 1:1051720/140‑1 (MQ=255) ggTAC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGcc < 2:809363/140‑1 (MQ=255) gTAC‑TGGGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCt < 2:195644/140‑1 (MQ=255) | ACGACCTGGCCCTGAATCTTACTGGCACGCGCTTTCAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑T‑GGGG‑GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCT > NC_000913/2185729‑2186002 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |