Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,188,683 T→C pseudogene (1252/2434 nt) yqiG → putative outer membrane usher protein YqiG

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,188,6830TC98.4% 454.0 / ‑2.6 125pseudogene (1252/2434 nt)yqiGputative outer membrane usher protein YqiG
Reads supporting (aligned to +/- strand):  ref base T (1/1);  new base C (65/58);  total (66/59)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.15e-01

Only 100 of 125 total aligned reads displayed.

GTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAATATATCAATGACACTAACCATTACACGAAT  >  NC_000913/3188550‑3188818
                                                                                                                                     |                                                                                                                                       
gtTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGc                                                                                                                                   <  2:51626/140‑1 (MQ=255)
 ttCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCt                                                                                                                                  >  2:1388202/1‑140 (MQ=255)
   cAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTAc                                                                                                                                >  2:258002/1‑140 (MQ=255)
   cAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTAc                                                                                                                                >  1:1331132/1‑140 (MQ=255)
         tAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCt                                                                                                                          <  2:206025/140‑1 (MQ=255)
          aaCAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTa                                                                                                                         <  2:927395/140‑1 (MQ=255)
          aaCAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTa                                                                                                                         >  1:949595/1‑140 (MQ=255)
               aCCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTAt                                                                                                                    >  2:631615/1‑140 (MQ=255)
               aCCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTAt                                                                                                                    >  1:1004704/1‑140 (MQ=255)
               aCCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTAt                                                                                                                    >  2:428763/1‑140 (MQ=255)
                ccGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTAtt                                                                                                                   >  1:1351392/1‑140 (MQ=255)
                ccGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTAtt                                                                                                                   >  2:1004906/1‑140 (MQ=255)
                    gATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCaaa                                                                                                               <  1:77356/140‑1 (MQ=255)
                     aTTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCaaaa                                                                                                              >  2:1207455/1‑140 (MQ=255)
                             tctcTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGa                                                                                                      >  1:1146273/1‑140 (MQ=255)
                                ctGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATc                                                                                                   >  1:1266860/1‑140 (MQ=255)
                                ctGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATc                                                                                                   <  2:1266860/140‑1 (MQ=255)
                                ctGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATc                                                                                                   <  2:1331132/140‑1 (MQ=255)
                                ctGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATc                                                                                                   <  1:1004906/140‑1 (MQ=255)
                                 tGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCt                                                                                                  >  1:575509/1‑140 (MQ=255)
                                       ccGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATc                                                                                                   <  2:1131365/133‑1 (MQ=255)
                                       ccGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGt                                                                                            >  2:528811/1‑140 (MQ=255)
                                        cGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTa                                                                                           <  1:36661/140‑1 (MQ=255)
                                         ggCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCg                                                                                              <  1:681984/136‑1 (MQ=255)
                                                      aTCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAGCTATTCAAAACGTTTTGAATCTGCCGGTAGCCAGCTCACTTTc                                                                             <  2:111476/140‑1 (MQ=255)
                                                      aTCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTc                                                                             <  2:949595/140‑1 (MQ=255)
                                                      aTCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTc                                                                             <  1:512561/140‑1 (MQ=255)
                                                       tCTTAACTCATTGGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCg                                                                            <  1:974881/140‑1 (MQ=255)
                                                          tAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTg                                                                         >  2:1313619/1‑140 (MQ=255)
                                                           aaCTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTgg                                                                        >  2:623937/1‑140 (MQ=255)
                                                           aaCTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATACAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTgg                                                                        >  2:1297607/1‑140 (MQ=255)
                                                                aTTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTAcc                                                                   >  1:153595/1‑140 (MQ=255)
                                                                      ttCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTtct                                                             <  1:471683/140‑1 (MQ=255)
                                                                      ttCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTtct                                                             <  2:1146273/140‑1 (MQ=255)
                                                                        cATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTc                                                                             <  1:486900/122‑1 (MQ=255)
                                                                        cATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTc                                                                             >  2:486900/1‑122 (MQ=255)
                                                                        cATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTctct                                                           >  2:1167883/1‑140 (MQ=255)
                                                                         aTTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTg                                                          >  1:1082231/1‑140 (MQ=255)
                                                                          ttATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGa                                                         >  1:687565/1‑140 (MQ=255)
                                                                            aTCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATa                                                       >  1:73914/1‑140 (MQ=255)
                                                                                tttGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATaaaaa                                                   >  1:467936/1‑140 (MQ=255)
                                                                                tttGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATaaaaa                                                   >  2:150874/1‑140 (MQ=255)
                                                                                tttGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAAc                                                  >  2:384252/1‑140 (MQ=255)
                                                                                  tGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACt                                                 >  2:912842/1‑140 (MQ=255)
                                                                                       tCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTtgtg                                            >  1:441392/1‑140 (MQ=255)
                                                                                        cacaCGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGa                                           <  1:528811/140‑1 (MQ=255)
                                                                                         acacGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGAc                                          >  1:706242/1‑140 (MQ=255)
                                                                                         acacGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGAc                                          <  1:1388202/140‑1 (MQ=255)
                                                                                           acGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACaa                                        <  2:283490/140‑1 (MQ=255)
                                                                                           acGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACaa                                        <  2:687565/140‑1 (MQ=255)
                                                                                              aTCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACaatga                                     <  1:92982/140‑1 (MQ=255)
                                                                                              aTCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACaatga                                     <  1:428763/140‑1 (MQ=255)
                                                                                                 tGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACaatgaatg                                  <  2:789048/140‑1 (MQ=255)
                                                                                                   aTGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAAtgaatgaa                                <  2:517287/140‑1 (MQ=255)
                                                                                                   aTGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAAtgaatgaa                                >  1:1142392/1‑140 (MQ=255)
                                                                                                   aTGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAAtgaatgaa                                >  2:440019/1‑140 (MQ=255)
                                                                                                    tGCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATgaatgaat                               <  1:274437/140‑1 (MQ=255)
                                                                                                     gCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAata                              >  2:1193919/1‑140 (MQ=255)
                                                                                                     gCTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAata                              >  1:153585/1‑140 (MQ=255)
                                                                                                      cTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAatat                             <  2:275644/140‑1 (MQ=255)
                                                                                                      cTCAGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAatat                             <  2:73914/140‑1 (MQ=255)
                                                                                                         aGTTGCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACaatg                                      >  2:1265600/1‑128 (MQ=255)
                                                                                                         aGTTGCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACaatg                                      <  1:1265600/128‑1 (MQ=255)
                                                                                                         aGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAGAACTTTGTGACAATGAATGAATATATc                          >  1:1275328/1‑140 (MQ=255)
                                                                                                         aGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACaatgaat                                   <  1:980360/131‑1 (MQ=255)
                                                                                                         aGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAatat                             <  1:549551/137‑1 (MQ=255)
                                                                                                         aGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAatat                             >  2:549551/1‑137 (MQ=255)
                                                                                                         aGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAATATATc                          >  2:975407/1‑140 (MQ=255)
                                                                                                         aGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAATATATc                          >  2:183544/1‑140 (MQ=255)
                                                                                                         aGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAATATATc                          >  2:69733/1‑140 (MQ=255)
                                                                                                         aGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAATATATc                          >  2:645721/1‑140 (MQ=255)
                                                                                                         aGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAATATATc                          >  2:1380393/1‑140 (MQ=255)
                                                                                                         aGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAATATATc                          >  1:538265/1‑140 (MQ=255)
                                                                                                         aGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAATATATc                          >  2:1153031/1‑140 (MQ=255)
                                                                                                         aGTTGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAATATATc                          >  2:1221595/1‑140 (MQ=255)
                                                                                                           ttGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATgaatgaat                               >  2:130549/1‑133 (MQ=255)
                                                                                                           ttGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAATATATCaa                        >  1:1070370/1‑140 (MQ=255)
                                                                                                           ttGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAATATATCaa                        <  1:1153031/140‑1 (MQ=255)
                                                                                                           ttGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAATATATCaa                        <  1:1380393/140‑1 (MQ=255)
                                                                                                           ttGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAATATATCaa                        <  1:150874/140‑1 (MQ=255)
                                                                                                           ttGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAATATATCaa                        >  2:1264887/1‑140 (MQ=255)
                                                                                                            tGCATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAATATATCAAt                       <  1:1167883/140‑1 (MQ=255)
                                                                                                              cATAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAATATATCAATGa                     <  1:645721/140‑1 (MQ=255)
                                                                                                                tAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAATATATCAATGaca                   <  1:222462/140‑1 (MQ=255)
                                                                                                                tAATCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTCCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAATATATCAATGaca                   <  2:1070370/140‑1 (MQ=255)
                                                                                                                   tCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAATATATCAATGACACTa                >  1:842931/1‑140 (MQ=255)
                                                                                                                   tCAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAATATATCAATGACACTa                >  2:277322/1‑140 (MQ=255)
                                                                                                                    cAGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAATATATCAATGACACTaa               <  2:153585/140‑1 (MQ=255)
                                                                                                                     aGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAATATATCAATGACACTAAc              <  1:277322/140‑1 (MQ=255)
                                                                                                                     aGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAATATATCAATGACACTAAc              >  2:662822/1‑140 (MQ=255)
                                                                                                                     aGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAATATATCAATGACACTAAc              <  1:258002/140‑1 (MQ=255)
                                                                                                                     aGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAATATATCAATGACACTAAc              <  2:1004704/140‑1 (MQ=255)
                                                                                                                     aGGATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAATATATCAATGACACTAAc              <  2:441392/140‑1 (MQ=255)
                                                                                                                       gATAAAGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAGAACTTTGTGACAATGAATGAATATATCAATGACACTAACCa            <  2:1275328/140‑1 (MQ=255)
                                                                                                                          aaaGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAATATATCAATGACACTAACCATTa         <  1:440019/140‑1 (MQ=255)
                                                                                                                           aaGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCTAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAATATATCAAt                       <  2:1229154/125‑1 (MQ=255)
                                                                                                                           aaGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAATATATCAAt                       >  1:1229154/1‑125 (MQ=255)
                                                                                                                            aGAAACGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAATATATCAATGACACTAACCATTaca       >  1:388665/1‑140 (MQ=255)
                                                                                                                              aaaCGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAATATATCAATGACACTAACCATTACACg     <  1:792301/140‑1 (MQ=255)
                                                                                                                                 cGGGCTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAATATATCAATGACACTAACCATTACACGAAt  >  2:252508/1‑140 (MQ=255)
                                                                                                                                     |                                                                                                                                       
GTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAATATATCAATGACACTAACCATTACACGAAT  >  NC_000913/3188550‑3188818

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: