| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,489,724 | Δ1 bp | coding (457/1221 nt) | argD ← | N‑acetylornithine aminotransferase/N‑succinyldiaminopimelate aminotransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,489,722 | 0 | C | . | 96.2% | 213.6 / 2.4 | 53 | coding (459/1221 nt) | argD | N‑acetylornithine aminotransferase/N‑succinyldiaminopimelate aminotransferase |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base . (21/30); total (22/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.87e-01 | |||||||||||
GCCCTCGCCCTGGATCGGCTCAACCACCACCGCACAGGTGTGATCATCCATCACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAACAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCG > NC_000913/3489584‑3489845 | gccctcgccctGGATCGGCTCAACCACCACCGCACAGGTGTGATCATCCATCACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGcc > 2:649088/1‑140 (MQ=255)gccctcgccctGGATCGGCTCAACCACCACCGCACAGGTGTGATCATCCATCACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGcc > 2:330525/1‑140 (MQ=255)gccctcgccctGGATCGGCTCAACCACCACCGCACAGGTGTGATCATCCATCACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGcc < 1:470225/140‑1 (MQ=255) ccctcgccctGGATCGGCTCAACCACCACCGCACAGGTGTGATCATCCATCACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGcca > 2:397698/1‑139 (MQ=255) cctGGATCGGCTCAACCACCACCGCACAGGTGTGATCATCCATCACCGCTTTCACTGCATGGCGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCg < 1:704705/140‑1 (MQ=255) cctGGATCGGCTCAACCACCACCGCACAGGTGTGATCATCCATCACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCg < 1:546441/140‑1 (MQ=255) tGGATCGGCTCAACCACCACCGCACAGGTGTGATCATCCATCACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGaa < 1:167477/140‑1 (MQ=255) ggATCGGCTCAACCACCACCGCACAGGTGTGATCATCCATCACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGaaa > 2:1087493/1‑140 (MQ=255) gATCGGCTCAACCACCACCGCACAGGTGTGATCATCCATCACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAAc < 1:649088/140‑1 (MQ=255) gCTCAACCACCACCGCACAGGTGTGATCATCCATCACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGccacc < 2:587065/126‑4 (MQ=255) gCTCAACCACCACCGCACAGGTGTGATCATCCATCACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGccacc > 1:587065/1‑123 (MQ=255) gCTCAACCACCACCGCACAGGTGTGATCATCCATCACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCg < 2:131914/131‑1 (MQ=255) gCTCAACCACCACCGCACAGGTGTGATCATCCATCACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCg > 1:131914/1‑131 (MQ=255) gCTCAACCACCACCGCACAGGTGTGATCATCCATCACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTaa > 1:382937/1‑140 (MQ=255) accaccaccGCACAGGTGTGATCATCCATCACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACagc > 1:578955/1‑140 (MQ=255) accaccGCACAGGTGTGATCATCCATCACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACagcgag < 1:42620/140‑1 (MQ=255) accaccGCACAGGTGTGATCATCCATCACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACagcgag < 2:103742/140‑1 (MQ=255) accaccGCACAGGTGTGATCATCCATCACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACagcgag < 1:1087493/140‑1 (MQ=255) accaccGCACAGGTGTGATCATCCATCACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACagcgag < 1:907582/140‑1 (MQ=255) caccGCACAGGTGTGATCATCCATCACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCT‑CCCACCCACCGAAACGGTAAACagcgagcg > 1:618881/1‑140 (MQ=255) cacaGGTGTGATCATCCATCGCCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACagcgag < 1:458001/133‑1 (MQ=255) cacaGGTGTGATCATCCATCACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACagcgag > 2:458001/1‑133 (MQ=255) aGGTGTGATCATCCATCACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACAGCGAGCGACCATGaa < 1:931518/140‑1 (MQ=255) gtgtGATCATCCATCACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACagcgag < 1:578774/128‑1 (MQ=255) gtgtGATCATCCATCACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACagcgag > 2:578774/1‑128 (MQ=255) tgATCATCCATCACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACagcgag > 1:212581/1‑125 (MQ=255) tgATCATCCATCACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACagcgag < 2:212581/125‑1 (MQ=255) atccatcACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACAGTAAACAGCGAGCGACCATGAAAAGCGTTATg < 1:491501/140‑1 (MQ=255) ccatcACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACAGCGAGCGACCATGAAAAGCGTTATGGa > 2:557978/1‑140 (MQ=255) cGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACAGCGAGCGACCATGAAAAGCGTTATGGAAGGCaat > 2:11711/1‑140 (MQ=255) tttCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACAGCGAGCGACCATGAAAAGCGTTATGGAAGGCaataat > 2:1097167/1‑140 (MQ=255) aCTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTg > 1:1040903/1‑140 (MQ=255) cATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGttt > 2:629410/1‑140 (MQ=255) aTGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGtttt > 2:170282/1‑140 (MQ=255) ggAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGa > 2:864228/1‑140 (MQ=255) ggAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGa < 1:397698/140‑1 (MQ=255) gaTCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACg < 2:672158/140‑1 (MQ=255) tCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAAc > 1:1152697/1‑137 (MQ=255) tCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAAc < 2:1152697/137‑1 (MQ=255) tCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACggg < 1:1097167/140‑1 (MQ=255) tCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACggg < 1:580607/140‑1 (MQ=255) gTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCt < 1:972037/140‑1 (MQ=255) gTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCt > 2:972037/1‑140 (MQ=255) gTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCt < 1:270789/140‑1 (MQ=255) gAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGca < 1:557978/140‑1 (MQ=255) gAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGca < 1:881991/140‑1 (MQ=255) aCGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGcaca < 1:11711/140‑1 (MQ=255) cGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCTAAACGGTAAACAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGcacac < 1:330525/140‑1 (MQ=255) cGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGcacac > 1:1071420/1‑140 (MQ=255) cGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCT‑CCCACCCACCGAAACGGTAAACAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGcacac < 2:618881/140‑1 (MQ=255) tgatgTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGt > 1:978578/1‑140 (MQ=255) atgTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTaa < 1:483200/140‑1 (MQ=255) tgTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAAt < 1:864228/140‑1 (MQ=255) cGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGc < 2:578955/140‑1 (MQ=255) cGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGc < 2:1040903/140‑1 (MQ=255) gTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCa > 2:447332/1‑140 (MQ=255) gTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCa > 1:424481/1‑140 (MQ=255) gCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGt < 1:170282/140‑1 (MQ=255) tCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAACAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCg > 2:1050527/1‑140 (MQ=255) | GCCCTCGCCCTGGATCGGCTCAACCACCACCGCACAGGTGTGATCATCCATCACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAACAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCG > NC_000913/3489584‑3489845 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |