Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,594,256	(C)8→9	pseudogene (3831/5422 nt)	yneO ←	AIDA‑I family autotransporter YneO

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,594,248	1	.	C	100.0%	248.1 / NA	69	pseudogene (3839/5422 nt)	yneO	AIDA‑I family autotransporter YneO
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base C (39/30);  total (39/30)

GACACGCAGTGCCCCCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑T‑‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTCAGTGGAG  >  NC_000913/1594114‑1594382                                                                                                                                         |                                                                                                                                        gACACGCAGTGCCCCCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑T‑‑ccccc                                                                                                                                   <  2:1069403/140‑1 (MQ=255)  acacGCAGTGCCCCCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑T‑‑cccccc                                                                                                                                  <  1:105484/140‑1 (MQ=255)   cacGCAGTGCCCCCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑T‑‑ccccccc                                                                                                                                 <  2:937137/140‑1 (MQ=255)            ccccccccAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGatat                                                                                                                         <  2:980157/140‑1 (MQ=255)            ccccccccAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGatat                                                                                                                         <  2:61453/140‑1 (MQ=255)                ccccAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCcgt                                                                                                                     <  2:957999/140‑1 (MQ=255)                ccccAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCcgt                                                                                                                     >  2:267434/1‑140 (MQ=255)                 cccAGGCATAACGTTCATATCACCTGCAGTGGAGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGACGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCcgcc                                                                                                                    >  1:787220/1‑138 (MQ=255)                  ccAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TCCCCCCCCCCACGATATCcgtc                                                                                                                    >  1:260059/1‑140 (MQ=255)                  ccAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCcgtcg                                                                                                                   >  1:171251/1‑140 (MQ=255)                  ccAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCcgtcg                                                                                                                   <  1:362067/140‑1 (MQ=255)                    aGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTa                                                                                                                 <  1:35682/140‑1 (MQ=255)                         tAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTg                                                                                                            >  1:315342/1‑140 (MQ=255)                           aCGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGAt                                                                                                          >  1:965160/1‑140 (MQ=255)                            cGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATa                                                                                                         <  2:965160/140‑1 (MQ=255)                            cGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATa                                                                                                         <  1:999661/140‑1 (MQ=255)                              ttCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATAcg                                                                                                       <  2:785986/140‑1 (MQ=255)                               tCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATAcgc                                                                                                      >  1:942294/1‑140 (MQ=255)                                cATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATAcgcc                                                                                                     >  1:745817/1‑140 (MQ=255)                                   atCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCcgcg                                                                                                  <  1:756692/140‑1 (MQ=255)                                       ccTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAAt                                                                                              >  2:139067/1‑140 (MQ=255)                                       ccTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAAt                                                                                              >  1:1154624/1‑140 (MQ=255)                                         tGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATc                                                                                             <  2:1091957/139‑1 (MQ=255)                                         tGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATc                                                                                             >  1:1091957/1‑139 (MQ=255)                                           cAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAGGCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATAcgccg                                                                                                    <  1:552478/130‑1 (MQ=255)                                           cAGTGGAGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATAcgccg                                                                                                    >  2:552478/1‑130 (MQ=255)                                              tggtgACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCgttgtt                                                                                       <  2:315342/140‑1 (MQ=255)                                              gggtgACATTTCCCGACATCACTCCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCgttgtt                                                                                       <  2:787220/139‑1 (MQ=255)                                                gtgACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTaa                                                                                     >  1:388069/1‑140 (MQ=255)                                                gtgACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTaa                                                                                     >  1:710489/1‑140 (MQ=255)                                                        tCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAgg                                                                             >  1:1007166/1‑140 (MQ=255)                                                          ccGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGAt                                                                           >  2:361053/1‑140 (MQ=255)                                                          ccGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCATACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAgggt                                                                           >  2:786585/1‑138 (MQ=255)                                                                tCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGt                                                                     <  2:388069/140‑1 (MQ=255)                                                                 cacaCCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTa                                                                    >  2:112429/1‑140 (MQ=255)                                                                        cTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TCCCCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGt                                                              <  2:260059/140‑1 (MQ=255)                                                                        cTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGtt                                                             >  1:1064980/1‑140 (MQ=255)                                                                            tATGGATATTAATGTTTTGCCTTCCCATATTAAGGGCAGAGTCGGACCCGAAAGAAATTCC‑‑CCCCCCCCACGATACCCGTCGTCCCCTGATCCGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGt                                                         <  2:1154624/140‑1 (MQ=255)                                                                                   atTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCa                                                  >  2:213842/1‑140 (MQ=255)                                                                                   atTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCa                                                  >  1:337046/1‑140 (MQ=255)                                                                                     tAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTcac                                                      <  1:830018/134‑1 (MQ=255)                                                                                     tAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTcac                                                      >  2:830018/1‑134 (MQ=255)                                                                                     tAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCacc                                                >  1:1111977/1‑140 (MQ=255)                                                                                        tgtgTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgct                                             <  2:337046/140‑1 (MQ=255)                                                                                        tgtgTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgct                                             <  2:1135031/140‑1 (MQ=255)                                                                                          tgtTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgctac                                           <  1:112429/140‑1 (MQ=255)                                                                                           gtTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgctacc                                          >  1:1053345/1‑140 (MQ=255)                                                                                            ttGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgctaccg                                         >  2:142443/1‑140 (MQ=255)                                                                                            ttGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgctaccg                                         <  2:1007166/140‑1 (MQ=255)                                                                                            ttGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgctaccg                                         >  1:182176/1‑140 (MQ=255)                                                                                            ttGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgctaccg                                         >  1:273850/1‑140 (MQ=255)                                                                                               aCTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTg                                      >  2:153674/1‑140 (MQ=255)                                                                                                   gCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATAc                                  >  1:747233/1‑140 (MQ=255)                                                                                                         ttAATGGCAGAGTCGGAACCGAAAGCAATT‑TCCCCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGc                             >  1:469859/1‑140 (MQ=255)                                                                                                             tGGCAGAGCCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCATCGTACCCTGACACCCCGAGAAATCTTAGTTAAGACACAGGACCCCGGTACCCAGTTTTGTCACATCACCGCTACCACTGATACTGTGCGTCAt                        >  2:591753/1‑140 (MQ=255)                                                                                                              ggCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATc                       >  1:509318/1‑140 (MQ=255)                                                                                                              ggCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATc                       >  1:559090/1‑140 (MQ=255)                                                                                                               gCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCg                      <  1:361053/140‑1 (MQ=255)                                                                                                                 agagTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGcc                    >  1:608401/1‑140 (MQ=255)                                                                                                                   agTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCa                  >  1:337938/1‑140 (MQ=255)                                                                                                                   agTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCa                  >  1:61039/1‑140 (MQ=255)                                                                                                                   agTCGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCa                  >  2:449564/1‑140 (MQ=255)                                                                                                                      cGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCt               <  1:153674/140‑1 (MQ=255)                                                                                                                      cGGAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCt               <  2:61039/140‑1 (MQ=255)                                                                                                                        gAACCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTAc             >  2:600302/1‑140 (MQ=255)                                                                                                                         aaCCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACg            <  2:1053345/140‑1 (MQ=255)                                                                                                                         aaCCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACg            <  1:449564/140‑1 (MQ=255)                                                                                                                          aCCGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGc           <  1:142443/140‑1 (MQ=255)                                                                                                                            cGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTc         <  2:337938/140‑1 (MQ=255)                                                                                                                            cGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTc         <  2:509318/140‑1 (MQ=255)                                                                                                                            cGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTc         <  1:213842/140‑1 (MQ=255)                                                                                                                            cGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTc         <  2:942294/140‑1 (MQ=255)                                                                                                                            cGAAAGCAATT‑TC‑CCCCCCCCACGATATCCGTCATACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTc         <  1:786585/140‑1 (MQ=255)                                                                                                                               aaGCAATT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTCAGt      >  2:728489/1‑140 (MQ=255)                                                                                                                                   aaTT‑TC‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTCAGTGgag  >  1:883624/1‑140 (MQ=255)                                                                                                                                         |                                                                                                                                        GACACGCAGTGCCCCCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑T‑‑CCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTCAGTGGAG  >  NC_000913/1594114‑1594382

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑