| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,568,512 | 0 | C | A | 21.1% | 162.4 / 13.7 | 57 | R3L (CGT→CTT) | mdtM | multidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| Reads supporting (aligned to +/- strand): ref base C (5/40); new base A (12/0); total (17/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.75e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAA‑GGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTG > NC_000913/4568374‑4568650 | aGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGGGGCATGGCGGGTAAAAAAACg < 2:1046037/140‑1 (MQ=255) gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCa < 1:561393/140‑1 (MQ=255) aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGCaa > 2:444616/1‑139 (MQ=255) cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATa < 1:788711/140‑1 (MQ=255) cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATa < 2:1129216/140‑1 (MQ=255) gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaacaaa > 2:961365/1‑140 (MQ=255) aTTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaacaaaaa > 1:426950/1‑138 (MQ=255) ttAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAacaaacaa < 1:444616/140‑1 (MQ=255) aaaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAACGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTc < 2:767880/140‑1 (MQ=255) cACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTg < 2:582413/140‑1 (MQ=255) aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGt < 1:961365/140‑1 (MQ=255) cGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑c < 1:665396/140‑1 (MQ=255) ccACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGga < 2:434167/140‑1 (MQ=255) cacaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAAATCCTTGT‑CCCgag > 1:1078346/1‑140 (MQ=255) aTGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCa > 1:888978/1‑140 (MQ=255) tGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCaa < 2:225164/140‑1 (MQ=255) aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCa > 1:998677/1‑137 (MQ=255) aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCa < 2:998677/137‑1 (MQ=255) aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAACTCCTTGT‑CCGGAG‑AACCCCAACg > 1:1020189/1‑140 (MQ=255) cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGGGGCATAACAAAAAACCCCCTGT‑CCGGAG‑AACCCCAACggg > 2:1132018/1‑140 (MQ=255) cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAAAAACACCCTGT‑CCCGGG‑AACCCCCACggg > 2:878871/1‑140 (MQ=255) cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAAAGGCATAAAAAAAAAAACCCTTT‑CCGGGG‑AACCCCCACagg > 1:1157774/1‑140 (MQ=255) cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAACAACACCCTGT‑CCGGGG‑AACCCCCACggg > 2:793991/1‑140 (MQ=255) cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAACAAACAACTCCTTAT‑CCGGAG‑GACCCCCACcgg > 2:347397/1‑140 (MQ=255) cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAAGGCGTAAAAAAAAAACCCCTGT‑CCCGAG‑AAACCCCACagg > 2:75295/1‑140 (MQ=255) cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGAAAAAAAAAGTGGCGTAACAAAAAAACACCTGT‑CCCGGG‑AGACCCAACggg > 2:43683/1‑140 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGGGGCATAAAAAAAAACTCCTTTT‑CCGGGG‑AACCCCAACgggg > 2:1014540/1‑140 (MQ=255) cAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGa < 1:1032099/140‑1 (MQ=255) gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGaaaa < 1:324155/140‑1 (MQ=255) gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGaaaa < 2:1141168/140‑1 (MQ=255) gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGaaaa < 2:1050462/140‑1 (MQ=255) gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAAAGGGCTAAAAAAAAACACCTTGG‑CCCGGG‑GACCCCCACGGGGaaaa > 2:895637/1‑140 (MQ=255) gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCCTAAAAAACAACTCCCTGTCCCGGGA‑AACCCCACCGGGGaaa > 2:1032099/1‑140 (MQ=255) cTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGGATAAAAAAAAACACCCTGT‑CCGGAG‑AACCCCAAAGGGGgaaaa > 2:751964/1‑139 (MQ=255) tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACg < 1:412044/140‑1 (MQ=255) tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACg < 1:793991/140‑1 (MQ=255) tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACg < 1:75295/140‑1 (MQ=255) tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACg < 1:699024/140‑1 (MQ=255) gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAAAAAAAAACACCTTGT‑CCGGAG‑AACCCCCACGGGGGAAACGaa > 2:412044/1‑140 (MQ=255) gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGGGGGATAACAAAAAACATCTTTT‑TCGGAG‑GAACCCAACGGGGAAAACTaa > 1:179370/1‑140 (MQ=255) aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGaaa > 1:1030839/1‑140 (MQ=255) aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAAGGCAAAACAAAAAACTCCCTGT‑TCGGAG‑AAACCCAACAGGGaaaaaaaaa > 2:657489/1‑135 (MQ=255) aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGGATAAAAAACAACTCCTTTT‑CCGGAG‑AAACCCAACGGGGGAAACGAAAATCaa > 1:1031992/1‑140 (MQ=255) aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAAATCCCTTT‑CCGGGG‑AACCCCAAAGGGGGAAAAGAAATTCaa > 2:699024/1‑140 (MQ=255) aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGGAAAAGAAAATCaa > 1:193357/1‑140 (MQ=255) aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAACTCCTTGT‑CCGGAG‑AAACCCCACGGGGGAAAAGAAAATCaa > 2:536212/1‑140 (MQ=255) tCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAAt < 1:43683/140‑1 (MQ=255) gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGGGGCATAAAAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGGAAACGAAAATCAAAAcc > 2:728832/1‑140 (MQ=255) cGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGt < 1:567114/140‑1 (MQ=255) cGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGt < 2:113132/140‑1 (MQ=255) cGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGt < 1:878871/140‑1 (MQ=255) aGATACGCGGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAAATCCTTGT‑CCGGAG‑AACCCCAACGGGGGAAAAGAAAATCAATACCGTCggg > 1:1015480/1‑139 (MQ=255) aaTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTa < 1:1014540/139‑1 (MQ=255) aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCCTAAAAAAAAACTCCCTGT‑CCGGAG‑AACCCCAACGGGGGAAACGAAAATCAATACCGTCGGGaa > 2:590796/1‑140 (MQ=255) aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGCATAAAAAACAACTCCCTGT‑CCCGAG‑AACCCCCACGGGGGAAAAGAAAATTAATACCGTCGGGaa > 2:537423/1‑140 (MQ=255) agcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGa < 1:728832/140‑1 (MQ=255) caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa < 1:536212/140‑1 (MQ=255) aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg < 1:751964/140‑1 (MQ=255) tCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAg < 2:582359/140‑1 (MQ=255) aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga < 2:888978/140‑1 (MQ=255) aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga < 1:310361/140‑1 (MQ=255) aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga < 1:962111/140‑1 (MQ=255) aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTAT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga < 1:347397/140‑1 (MQ=255) aTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAAGGCATAAAAAACAACTCCCTTT‑CCCGAG‑GACCCCCACGGGGAAAAAGAAAATCAAAACCCTCGGGAATGACGAAAAGCAGGGGAGaaag > 2:544915/1‑138 (MQ=255) tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAACTCCCTGT‑CCGGAG‑AACCCCCACGGGGGAAAAGAAAATCAAAACCGTCGGGAATAAGGAAAAGAAGGGGGGAA‑agg > 2:310361/1‑140 (MQ=255) ccATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACACCTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGGGAA‑GGGCAACga < 2:179370/140‑1 (MQ=255) aTCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAACTGGCATAAAAAAAAACACCTTGT‑CCCGGG‑AAACCCCACGGGGAAAAAGAAAATCAAAAACCTCGGGAATGACGAAAAGCAGGGGAGAA‑AGGGAACgaaa > 2:476787/1‑138 (MQ=255) aaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAA‑GGGCAACGAGACTGCAAAt < 1:964958/140‑1 (MQ=255) cAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAA‑GGGCAACGAGACTGCAAATGTa < 1:115561/140‑1 (MQ=255) cAGCGTGGCGGCATGGCGGGGGAAAAAAAAGGGGACAACAAAAAAACCCCTTT‑CCGGGGAAACCCAAACGGGGAAAA‑GAAAATCAAAAACCCCGGGAATAAAGAAAAGGAGGGGAGAAGGGGGAACG‑GACTGCaaaaata > 2:561511/1‑136 (MQ=255) aGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGGATAAAAAAAAACTCCTTGT‑CCGGGG‑AAACCCCACGGGGGAAAAGAAAATCAATACCCTCGGGAAAGACGAAAAGCAGGGGGGAA‑AGGGAAAGAGAATGCaaagatac > 2:1065409/1‑135 (MQ=255) cGTGGCGGCATGGCGGGTAAAAAAAAATGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGGAAAAGAAAATCAATACCCTCGGGAATGACGAAAAGCAGGGGAGAA‑AGGCAACGAGACTGCAAAAGTACTg > 2:214172/1‑140 (MQ=255) cggcATGGCGGGGAAAAAAAAGTGGCATAACAAACAACTCCTTGT‑CCGGGG‑AACCCCAACGGGGGAAACGAAAATCAATACCGGCGGTAATGACGAAAAGCAGGGGAGAA‑GGGGAACGAGACTGCAAATGTACTGAAttt > 2:115561/1‑140 (MQ=255) aTGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAA‑GGGCAACGAGACTGCAAATGTACTGAATTTCATg < 2:193357/140‑1 (MQ=255) gtaaaaaaaaCG‑GGCATAACAAAAAACTCCTTGT‑CCGGAG‑AAACCCCACGGGGGAAACGAAAATCAATAACCTCGGGAATGACGAAAAGCAGGGGAGAA‑GGGCAACGAGACTGCAAAAGTACTGAAATTTATGTAATCaa > 2:348262/4‑140 (MQ=255) aaaaaaCGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAA‑GGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACca < 1:214172/140‑1 (MQ=255) aaaaCGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAA‑GGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACcaca < 1:1132018/140‑1 (MQ=255) aCGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAA‑GGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTg < 2:1030839/140‑1 (MQ=255) | AGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAA‑GGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTG > NC_000913/4568374‑4568650 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |