Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,471,633	T→C	T628A (ACC→GCC)	fusA ←	elongation factor G

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,471,633	0	T	C	100.0%	315.4 / NA	85	T628A (ACC→GCC)	fusA	elongation factor G
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (39/46);  total (39/46)

AGAGAACGCAGCTGAGTTGCGTATCCGAACATTTCAGACAGCGGTACTTCAGCGTGGATCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGTGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGATAGAAGCAGCCAGTTTAAACGCCAGTTCAGAGGAGTCAACGTCATGGT  >  NC_000913/3471497‑3471767                                                                                                                                         |                                                                                                                                       agagAACGCAGCTGAGTTGCGTATCCGAACATTTCAGACAGCGGTACTTCAGCGTGGATCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGtt                                                                                                                                     <  2:204662/140‑1 (MQ=255)  gagaACGCAGCTGAGTTGCGTATCCGAACATTTCAGACAGCGGTACTTCAGCGTGGATCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTtc                                                                                                                                    >  2:363314/1‑140 (MQ=255)  gagaACGCAGCTGAGTTGCGTATCCGAACATTTCAGACAGCGGTACTTCAGCGTGGATCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTtc                                                                                                                                    >  2:832931/1‑140 (MQ=255)  gagaACGCAGCTGAGTTGCGTATCCGAACATTTCAGACAGCGGTACTTCAGCGTGGATCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTtc                                                                                                                                    >  2:1152515/1‑140 (MQ=255)         cAGCTGAGTTGCGTATCCGAACATTTCAGACAGCGGTACTTCAGCGTGGATCTTAACGCAAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCg                                                                                                                             >  2:801184/1‑140 (MQ=255)             tGAGTTGCGTATCCGAACATTTCAGACAGCGGTACTTCAGCGTGGATCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGt                                                                                                                         >  2:508220/1‑140 (MQ=255)                     gTATCCGAACATTTCAGACAGCGGTACTTCAGCGTGGATCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACtt                                                                                                                 <  2:102033/140‑1 (MQ=255)                     gTATCCGAACATTTCAGACAGCGGTACTTCAGCGTGGATCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACtt                                                                                                                 <  2:1110251/140‑1 (MQ=255)                      tATCCGAACATTTCAGACAGCGGTACTTCAGCGTGGATCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTc                                                                                                                <  1:832931/140‑1 (MQ=255)                      tATCCGAACATTTCAGACAGCGGTACTTCAGCGTGGATCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTc                                                                                                                >  2:897349/1‑140 (MQ=255)                       aTCCGAACATTTCAGACAGCGGTACTTCAGCGTGGATCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCa                                                                                                               <  2:132307/140‑1 (MQ=255)                       aTCCGAACATTTCAGACAGCGGTACTTCAGCGTGGATCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCa                                                                                                               <  1:982941/140‑1 (MQ=255)                        tCCGAACATTTCAGACAGCGGTACTTCAGCGTGGATCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCaa                                                                                                              <  1:354065/140‑1 (MQ=255)                        tCCGAACATTTCAGACAGCGGTACTTCAGCGTGGATCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCaa                                                                                                              <  1:945446/140‑1 (MQ=255)                        tCCGAACATTTCAGACAGCGGTACTTCAGCGTGGATCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCaa                                                                                                              <  1:377829/140‑1 (MQ=255)                         ccGAACATTTCAGACAGCGGTACTTCAGCGTGGATCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAAc                                                                                                             >  2:613138/1‑140 (MQ=255)                         ccGAACATTTCAGACAGCGGTACTTCAGCGTGGATCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAAc                                                                                                             >  1:217452/1‑140 (MQ=255)                           gAACATTTCAGACAGCGGTACTTCAGCGTGGATCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCt                                                                                                           >  1:175030/1‑140 (MQ=255)                                 ttCAGACAGCGGTACTTCAGCGTGGATCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGttt                                                                                                                       <  2:983692/122‑1 (MQ=255)                                 ttCAGACAGCGGTACTTCAGCGTGGATCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGttt                                                                                                                       >  1:983692/1‑122 (MQ=255)                                 ttCAGACAGCGGTACTTCAGCGTGGATCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGttt                                                                                                                       >  1:542511/1‑122 (MQ=255)                                 ttCAGACAGCGGTACTTCAGCGTGGATCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGttt                                                                                                                       <  2:542511/122‑1 (MQ=255)                                 ttCAGACAGCGGTACTTCAGCGTGGATCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGa                                                                                                     >  2:1004609/1‑140 (MQ=255)                                 ttCAGACAGCGGTACTTCAGCGTGGATCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGa                                                                                                     <  1:1152515/140‑1 (MQ=255)                                 ttCAGACAGCGGTACTTCAGCGTGGATCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAATCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGa                                                                                                     <  1:335658/140‑1 (MQ=255)                                   cAGACAGCGGTACTTCAGCGTGGATCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCaa                                                                                                              >  1:212847/1‑129 (MQ=255)                                   cAGACAGCGGTACTTCAGCGTGGATCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCaa                                                                                                              <  2:212847/129‑1 (MQ=255)                                         gCGGTACTTCAGCGTGGATCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCa                                                                                             >  2:924555/1‑140 (MQ=255)                                                    gCGTGGATCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTgg                                                                                  >  2:923687/1‑140 (MQ=255)                                                       tGGATCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGttt                                                                               >  1:950859/1‑140 (MQ=255)                                                         gATCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCg                                                                             <  1:977635/140‑1 (MQ=255)                                                         gATCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCg                                                                             >  2:422258/1‑140 (MQ=255)                                                          aTCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGc                                                                            <  1:81723/140‑1 (MQ=255)                                                           tCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCt                                                                           <  1:251093/140‑1 (MQ=255)                                                           tCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCt                                                                           <  1:1078305/140‑1 (MQ=255)                                                           tCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCt                                                                           <  2:628410/140‑1 (MQ=255)                                                           tCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCt                                                                           <  1:508220/140‑1 (MQ=255)                                                                    cAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAg                                                                  >  1:1127187/1‑140 (MQ=255)                                                                      gTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTa                                                                     >  1:694993/1‑135 (MQ=255)                                                                      gTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTa                                                                     <  2:694993/135‑1 (MQ=255)                                                                      gTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGcc                                                                <  1:462314/140‑1 (MQ=255)                                                                      gTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGcc                                                                >  2:196521/1‑140 (MQ=255)                                                                      gTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGcc                                                                <  1:302398/140‑1 (MQ=255)                                                                      gTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGcc                                                                >  2:1010520/1‑140 (MQ=255)                                                                      gTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGcc                                                                >  2:239369/1‑140 (MQ=255)                                                                      gTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGcc                                                                <  1:543393/140‑1 (MQ=255)                                                                      gTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGcc                                                                <  1:940206/140‑1 (MQ=255)                                                                      gTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGcc                                                                <  1:897349/140‑1 (MQ=255)                                                                      gTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGcc                                                                <  2:976763/140‑1 (MQ=255)                                                                      gTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGcc                                                                >  1:800162/1‑140 (MQ=255)                                                                                    cTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGa                                                  <  2:950859/140‑1 (MQ=255)                                                                                                cATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGATAGAAGCAGCCa                                      <  1:239369/140‑1 (MQ=255)                                                                                                 aTACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGATAGAAGCAGCCAg                                     >  1:181044/1‑140 (MQ=255)                                                                                                   aCCACGACGACGGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGATAGAAGCAGCCAGtt                                   >  2:383239/1‑140 (MQ=255)                                                                                                          cgacgGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGATAGAAGCAGCCAGTTTAAACGc                            <  1:362198/140‑1 (MQ=255)                                                                                                          cgacgGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGATAGAAGCAGCCAGTTTAAACGc                            <  1:1093448/140‑1 (MQ=255)                                                                                                          cgacgGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGATAGAAGCAGCCAGTTTAAACGc                            <  2:181044/140‑1 (MQ=255)                                                                                                          cgacgGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGATAGAAGCAGCCAGTTTAAACGc                            <  2:800162/140‑1 (MQ=255)                                                                                                          cgacgGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGATAGAAGCAGCCAGTTTAAACGc                            <  2:730560/140‑1 (MQ=255)                                                                                                            acgGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGATAGAAGCAGCCAGTTTAAACGCCa                          >  1:1134355/1‑140 (MQ=255)                                                                                                             cgGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGATAGAAGCAGCCAGTTTAAACGc                            <  2:70292/137‑1 (MQ=255)                                                                                                             cgGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGATAGAAGCAGCCAGTTTAAACGc                            >  1:70292/1‑137 (MQ=255)                                                                                                             cgGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGATAGAAGCAGCCAGTTTAAACGCCAg                         >  2:956735/1‑140 (MQ=255)                                                                                                             cgGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGATAGAAGCAGCCAGTTTAAACGCCAg                         >  1:97472/1‑140 (MQ=255)                                                                                                             cgGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGATAGAAGCAGCCAGTTTAAACGCCAg                         >  2:34215/1‑140 (MQ=255)                                                                                                             cgGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGATAGAAGCAGCCAGTTTAAACGCCAg                         >  1:372214/1‑140 (MQ=255)                                                                                                             cgGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGATAGAAGCAGCCAGTTTAAACGCCAg                         >  1:556956/1‑140 (MQ=255)                                                                                                             cgGCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGATAGAAGCAGCCAGTTTAAACGCCAg                         >  1:854414/1‑140 (MQ=255)                                                                                                               gCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGATAGAAGCAGCCAGTTTAAACGCCAGtt                       >  1:1064614/1‑140 (MQ=255)                                                                                                               gCTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGATAGAAGCAGCCAGTTTAAACGCCAGtt                       >  2:883598/1‑140 (MQ=255)                                                                                                                cTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGATAGAAGCAGCCAGTTTAAACGc                            <  1:484393/134‑1 (MQ=255)                                                                                                                cTCAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGATAGAAGCAGCCAGTTTAAACGc                            >  2:484393/1‑134 (MQ=255)                                                                                                                  cAAGTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGATAGAAGCAGCCAGTTTAAACGCCAGTTCag                    <  1:1010520/140‑1 (MQ=255)                                                                                                                     gTCACCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGATAGAAGCAGCCAGTTTAAACGCCAGTTCAgagg                 <  2:175030/140‑1 (MQ=255)                                                                                                                        aCCGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGATAGAAGCAGCCAGTTTAAACGCCAGTTCAGAGGAGt              <  2:1069860/140‑1 (MQ=255)                                                                                                                         ccGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGATAGAAGCAGCCAGTTTAAACGc                            <  1:514463/125‑1 (MQ=255)                                                                                                                         ccGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGATAGAAGCAGCCAGTTTAAACGc                            >  2:514463/1‑125 (MQ=255)                                                                                                                          cGATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGATAGAAGCAGCCAGTTTAAACGCCAGTTCAGAGGAGTCa            >  1:772822/1‑140 (MQ=255)                                                                                                                           gATAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGATAGAAGCAGCCAGTTTAAACGCCAGTTCAGAGGAGTCaa           <  1:363314/140‑1 (MQ=255)                                                                                                                            aTAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGATAGAAGCAGCCAGTTTAAACGCCAGTTCAGAGGAGTCAAc          <  1:383239/140‑1 (MQ=255)                                                                                                                             tAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGATAGAAGCAGCCAGTTTAAACGCCAGTTCAGAGGAGTCAACg         <  1:76196/140‑1 (MQ=255)                                                                                                                             tAACGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGATAGAAGCAGCCAGTTTAAACGCCAGTTCAGAGGAGTCAACg         >  1:1069725/1‑140 (MQ=255)                                                                                                                               aCGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGATAGAAGCAGCCAGTTTAAACGCCAGTTCAGAGGAGTCAACGTc       <  1:924555/140‑1 (MQ=255)                                                                                                                               aCGTCACCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGATAGAAGCAGCCAGTTTAAACGCCAGTTCAGAGGAGTCAACGTc       <  2:976609/140‑1 (MQ=255)                                                                                                                                    aCCGGCGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGATAGAAGCAGCCAGTTTAAACGCCAGTTCAGAGGAGTCAACGTCATGGt  <  2:1134355/140‑1 (MQ=255)                                                                                                                                         |                                                                                                                                       AGAGAACGCAGCTGAGTTGCGTATCCGAACATTTCAGACAGCGGTACTTCAGCGTGGATCTTAACGCCAGTAACTTCAGATTCCTGACCTTTGAGCATACCACGACGACGGCTCAAGTCACCGATAACGTCACCGGTGTTCTCTTCCGGAGTTTCTACTTCAACCTTCATGATCGGCTCAAGCAGAACTGGTTTCGCTTTCTTAAAGCCTTCTTTAAAGGCGATAGAAGCAGCCAGTTTAAACGCCAGTTCAGAGGAGTCAACGTCATGGT  >  NC_000913/3471497‑3471767

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑