BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,546,947	A→G	S618G (AGT→GGT)	fimD →	type I fimbriae usher protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,546,947	0	A	G	100.0%	360.5 / NA	98	S618G (AGT→GGT)	fimD	type I fimbriae usher protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (47/51); total (47/51)

Only 100 of 113 total aligned reads displayed.

TATCAACTGGACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTCAGCTATAGCGTGCAAACCGGCTATGCCGGGGGAGGCGATGGAAATAG  >  NC_000913/4546811‑4547083

tatCAACTGGACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACAtgccggtg                                                                                                                                       <  2:434529/140‑1 (MQ=255)

tatCAACTGGACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACAtgccggtg                                                                                                                                       <  1:1023593/140‑1 (MQ=255)

 atCAACTGGACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACAtgccggtgc                                                                                                                                      <  2:450835/140‑1 (MQ=255)

  tCAACTGGACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACAtgccggtgcc                                                                                                                                     >  2:283510/1‑140 (MQ=255)

  tCAACTGGACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACAtgccggtgcc                                                                                                                                     >  2:384922/1‑140 (MQ=255)

  tCAACTGGACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACAtgccggtgcc                                                                                                                                     <  1:761663/140‑1 (MQ=255)

   cAACTGGACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACAtgccggtgcca                                                                                                                                    >  1:984054/1‑140 (MQ=255)

    aaCTGGACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACAtgccggtgccag                                                                                                                                   <  1:267791/140‑1 (MQ=255)

     aCTGGACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGc                                                                                                                                  <  1:951741/140‑1 (MQ=255)

         gACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACAtgccggtgcc                                                                                                                                     <  1:231867/133‑1 (MQ=255)

         gACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACa                                                                                                                              >  2:794989/1‑140 (MQ=255)

         gACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACa                                                                                                                              >  2:621368/1‑140 (MQ=255)

         gACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACa                                                                                                                              >  1:748593/1‑140 (MQ=255)

         gACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACa                                                                                                                              >  1:258054/1‑140 (MQ=255)

          aCGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACAGGATCAGATGTTAGCGCTGAACGTCAATA‑TCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGc                                                                                                                            >  2:1031904/1‑140 (MQ=255)

           cGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGc                                                                                                                            >  1:634478/1‑140 (MQ=255)

                  cTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTcac                                                                                                                     <  1:733794/140‑1 (MQ=255)

                   tataGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTcaca                                                                                                                    >  2:215879/1‑140 (MQ=255)

                   tataGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTcaca                                                                                                                    <  1:554050/140‑1 (MQ=255)

                   tataGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTcaca                                                                                                                    <  1:1011645/140‑1 (MQ=255)

                   tataGCCTGACGAAAAACGCCTGGAAAAAAGGACTGGATCAGATCTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTTTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTcaca                                                                                                                    <  2:249464/140‑1 (MQ=255)

                        ccTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGAtc                                                                                                               >  1:909446/1‑140 (MQ=255)

                        ccTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGAtc                                                                                                               >  1:445539/1‑140 (MQ=255)

                          tGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTcaca                                                                                                                    >  1:409412/1‑133 (MQ=255)

                          tGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGAtctc                                                                                                             >  2:41693/1‑140 (MQ=255)

                          tGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGAtctc                                                                                                             >  1:1023063/1‑140 (MQ=255)

                            aCGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTcac                                                                                                                     >  1:132851/1‑130 (MQ=255)

                            aCGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTcac                                                                                                                     <  2:132851/130‑1 (MQ=255)

                            aCGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGAt                                                                                                                <  1:918160/135‑1 (MQ=255)

                            aCGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGAt                                                                                                                >  2:918160/1‑135 (MQ=255)

                            aCGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCaa                                                                                                           >  1:774083/1‑140 (MQ=255)

                            aCGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCaa                                                                                                           >  1:259190/1‑140 (MQ=255)

                            aCGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCaa                                                                                                           >  2:1025037/1‑140 (MQ=255)

                            aCGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCaa                                                                                                           >  1:202197/1‑140 (MQ=255)

                            aCGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCaa                                                                                                           >  2:975341/1‑140 (MQ=255)

                            aCGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCAACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCaa                                                                                                           >  1:249464/1‑140 (MQ=255)

                                     gCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGAt                                                                                                  <  2:258054/140‑1 (MQ=255)

                                         ggCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGAcc                                                                                              <  1:1144661/140‑1 (MQ=255)

                                          gCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCa                                                                                             >  1:702700/1‑140 (MQ=255)

                                            aaaaaGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCAGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAAt                                                                                           <  2:619704/140‑1 (MQ=255)

                                                aGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACGAATctgg                                                                                       <  1:935619/140‑1 (MQ=255)

                                                aGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATctgg                                                                                       <  1:972432/140‑1 (MQ=255)

                                                aGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATctgg                                                                                       <  1:384922/140‑1 (MQ=255)

                                                aGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATctgg                                                                                       <  2:774083/140‑1 (MQ=255)

                                                aGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAACCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATctgg                                                                                       <  1:418757/140‑1 (MQ=255)

                                                  gACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATctggct                                                                                     <  2:1121087/140‑1 (MQ=255)

                                                  gACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATctggct                                                                                     <  2:1023063/140‑1 (MQ=255)

                                                    cGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATctggctgg                                                                                   >  2:919486/1‑140 (MQ=255)

                                                     gggATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGgt                                                                                  <  1:975341/140‑1 (MQ=255)

                                                     gggATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGgt                                                                                  <  1:215879/140‑1 (MQ=255)

                                                     gggATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGgt                                                                                  <  1:794989/140‑1 (MQ=255)

                                                       gATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGgtgt                                                                                <  1:1025037/140‑1 (MQ=255)

                                                          cAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGtata                                                                             <  1:1136593/140‑1 (MQ=255)

                                                            gATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATctggctg                                                                                    <  1:146715/131‑1 (MQ=255)

                                                            gATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATctggctg                                                                                    >  2:146715/1‑131 (MQ=255)

                                                               gTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTa                                                                        >  2:20854/1‑140 (MQ=255)

                                                                 tAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACg                                                                      >  2:1001360/1‑140 (MQ=255)

                                                                 tAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACg                                                                      >  2:94523/1‑140 (MQ=255)

                                                                 tAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACg                                                                      <  2:353411/140‑1 (MQ=255)

                                                                  aGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATctgg                                                                                       >  1:842238/1‑122 (MQ=255)

                                                                  aGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATctgg                                                                                       <  2:842238/122‑1 (MQ=255)

                                                                  aGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGt                                                                     <  1:926887/140‑1 (MQ=255)

                                                                       ttAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGta                                                                               >  1:923178/1‑125 (MQ=255)

                                                                       ttAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGta                                                                               <  2:923178/125‑1 (MQ=255)

                                                                        tAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTgg                                                               >  2:872776/1‑140 (MQ=255)

                                                                              cAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCCGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGaca                                                         <  2:807677/140‑1 (MQ=255)

                                                                               aaTATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGacaa                                                        <  1:912084/140‑1 (MQ=255)

                                                                                 tatTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGacaaca                                                      >  1:1128398/1‑140 (MQ=255)

                                                                                   ttCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACaacaac                                                    <  2:639646/140‑1 (MQ=255)

                                                                                   ttCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACaacaac                                                    <  1:621368/140‑1 (MQ=255)

                                                                                   ttCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACaacaac                                                    <  2:259190/140‑1 (MQ=255)

                                                                                   ttCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACaacaac                                                    <  2:614339/140‑1 (MQ=255)

                                                                                       tttCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACaacaac                                                    >  2:931607/1‑136 (MQ=255)

                                                                                       tttCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACaacaac                                                    <  1:931607/136‑1 (MQ=255)

                                                                                        ttCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGacaaca                                                      >  2:1129529/1‑133 (MQ=255)

                                                                                        ttCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGacaaca                                                      <  1:1129529/133‑1 (MQ=255)

                                                                                         tCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTCAGc                                              >  1:972449/1‑140 (MQ=255)

                                                                                           aGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTCAGCta                                            >  1:125978/1‑140 (MQ=255)

                                                                                             ccACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTCAGCtata                                          >  1:1003849/1‑140 (MQ=255)

                                                                                             ccACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTCAGCtata                                          >  1:281214/1‑140 (MQ=255)

                                                                                             ccACTGGCTGCGTACTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTCAGCtata                                          <  2:1002191/140‑1 (MQ=255)

                                                                                                cTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTCAGCTATAGCg                                       >  2:57602/1‑140 (MQ=255)

                                                                                                      gCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTCAGCTATAGCGTGCaaa                                 <  1:1001360/140‑1 (MQ=255)

                                                                                                      gCGTTCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTCAGCTATAGCGTGCaaa                                 <  2:139617/140‑1 (MQ=255)

                                                                                                         ttCTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGGCCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTCAGCTATAGCGTGCAAActg                              >  2:1070280/1‑138 (MQ=255)

                                                                                                           cTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGGCCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTCAGCTATAGCGTGCAAACCGGc                            <  1:1070280/140‑1 (MQ=255)

                                                                                                           cTGACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTCAGCTATAGCGTGCAAACCGGc                            <  2:1128398/140‑1 (MQ=255)

                                                                                                             gACAGTAAATCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTCAGCTATAGCGTGCAAACCGGCTa                          >  1:769114/1‑140 (MQ=255)

                                                                                                                    aaTCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTCAGCTATAGCGTGCAAACCGGCTATGCCggg                   >  1:1054915/1‑140 (MQ=255)

                                                                                                                     aTCTCAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTCAGCTATAGCGTGCAAACCGGCTATGCCgggg                  <  2:281214/140‑1 (MQ=255)

                                                                                                                      tctcAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTCAGCTATAGCGTGCAAACCGGCTATGCCggggg                 <  2:824825/140‑1 (MQ=255)

                                                                                                                      tctcAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTCAGCTATAGCGTGCAAACCGGCTATGCCggggg                 >  1:755183/1‑140 (MQ=255)

                                                                                                                        tcAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTCAGCTATAGCGTGCAAACCGGCTATGCCGGGGGAg               <  2:215016/140‑1 (MQ=255)

                                                                                                                        tcAGTGGCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTCAGCTATAGCGTGCAAACCGGCTATGCCGGGGGAg               <  2:767912/140‑1 (MQ=255)

                                                                                                                             ggCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTCAGCTATAGCGTGCAAACCGGCTATGCCGGGGGAGGCGAt          <  2:202197/140‑1 (MQ=255)

                                                                                                                             ggCGACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTCAGCTATAGCGTGCAAACCGGCTATGCCGGGGGAGGCGAt          >  2:771025/1‑140 (MQ=255)

                                                                                                                                gACATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTCAGCTATAGCGTGCAAACCGGCTATGCCGGGGGAGGCGATGGa       >  2:1080493/1‑140 (MQ=255)

                                                                                                                                 aCATGCCGGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTCAGCTATAGCGTGCAAACCGGCTATGCCGGGGGAGGCGATGGaa      >  2:95564/1‑140 (MQ=255)

                                                                                                                                    tgccggtgccagCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTCAGCTATAGCGTGCAAACCGGCTATGCCGGGGGAGGCGATGGAAATa   >  2:141272/1‑140 (MQ=255)

                                                                                                                                     gccggtgccagCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTCAGCTATAGCGTGCAAACCGGCTATGCCGGGGGAGGCGATGGAAATAg  <  1:141272/140‑1 (MQ=255)

TATCAACTGGACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTCAGCTATAGCGTGCAAACCGGCTATGCCGGGGGAGGCGATGGAAATAG  >  NC_000913/4546811‑4547083

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`