Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,593,081 T→C pseudogene (5006/5422 nt) yneO ← AIDA‑I family autotransporter YneO

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,593,0810TC100.0% 148.6 / NA 42pseudogene (5006/5422 nt)yneOAIDA‑I family autotransporter YneO
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (17/25);  total (17/25)

TTCACCCCAAGTCGCGTTTGCACATTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGTACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACGGTTATCGGAACTGACGCTGTTATCAAACCAGTTATACAGCGC  >  NC_000913/1592945‑1593216
                                                                                                                                        |                                                                                                                                       
ttCACCCCAAGTCGCGTTTGCACATTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGTACCAGGTATTCAGCGcccc                                                                                                                                      <  2:48095/140‑1 (MQ=255)
   aCCCCAAGTCGCGTTTGCACATTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGTACCAGGTATTCAGCGCCCCTTc                                                                                                                                   >  1:1102230/1‑140 (MQ=255)
    ccccAAGTCGCGTTTGCACATTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGTACCAGGTATTCAGCGCCCCTTCg                                                                                                                                  <  2:823843/140‑1 (MQ=255)
    ccccAAGTCGCGTTTGCACATTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGTACCAGGTATTCAGCGCCCCTTCg                                                                                                                                  <  1:1022788/140‑1 (MQ=255)
         aGTCGCGTTTGCACATTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGTACCAGGTATTCAGCGCCCCTTCGCTGcc                                                                                                                             <  1:42400/140‑1 (MQ=255)
               gTTTGCACATTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGTACCAGGTATTCAGCGCCCCTTCGCTGCCGCTaaa                                                                                                                       >  1:187679/1‑140 (MQ=255)
                     acaTTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGTACCAGGTATTCAGCGCCCCTTCGCTGCCGCTAAATGTTcc                                                                                                                 <  2:821980/140‑1 (MQ=255)
                          tCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGTACCAGGTATTCAGCGCCCCTTCGCTGCCGCTAAATGTTCCCGCtt                                                                                                            <  1:1058400/140‑1 (MQ=255)
                           ccGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGTACCAGGTATTCAGCGCCCCTTCGCTGCCGCTAAATGTTCCCGCTTc                                                                                                           <  1:767142/140‑1 (MQ=255)
                                  cTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGTACCAGGTATTCAGCGCCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGta                                                                                                    <  2:1102230/140‑1 (MQ=255)
                                     ccGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGTACCAGGTATTCAGCGCCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATac                                                                                                 >  2:1044264/1‑140 (MQ=255)
                                     ccGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGTACCAGGTATTCAGCGCCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATac                                                                                                 <  1:573200/140‑1 (MQ=255)
                                       gTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGTACCAGGTATTCAGCGCCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATaccc                                                                                               <  2:212991/140‑1 (MQ=255)
                                       gTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGTACCAGGTATTCAGCGCCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATaccc                                                                                               <  1:471000/140‑1 (MQ=255)
                                       gTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGTACCAGGTATTCAGCGCCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATaccc                                                                                               <  1:941135/140‑1 (MQ=255)
                                          tCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGTACCAGGTATTCAGCGCCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATacccacc                                                                                            <  1:539890/140‑1 (MQ=255)
                                                cgcgTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGTACCAGGTATTCAGCGCCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAAc                                                                                      >  2:1154933/1‑140 (MQ=255)
                                                                 ggTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGTCCCAGGTATTCAGCGCCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACAcc                                                                       <  2:1013258/138‑1 (MQ=255)
                                                                 ggTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGTACCAGGTATTCAGCGCCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACAcc                                                                       >  1:1013258/1‑138 (MQ=255)
                                                                 ggTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGTACCAGGTATTCAGCGCCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACcgc                                                                     >  2:295139/1‑140 (MQ=255)
                                                                 ggTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGTACCAGGTATTCAGCGCCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACcgc                                                                     >  2:757985/1‑140 (MQ=255)
                                                                         cGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGTACCAGGTATTCAGCGCCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCa                                                             <  2:785635/140‑1 (MQ=255)
                                                                                        ccATCCAGGTGATTTGCGCCTGTGGCTGGACGTACCAGGTATTCAGCGCCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGaa                                              >  1:496949/1‑140 (MQ=255)
                                                                                        ccATCCAGGTGATTTGCGCCTGTGGCTGGACGTACCAGGTATTCAGCGCCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGaa                                              <  2:586728/140‑1 (MQ=255)
                                                                                        ccATCCAGGTGATTTGCGCCTGTGGCTGGACGTACCAGGTATTCAGCGCCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGaa                                              <  2:496949/140‑1 (MQ=255)
                                                                                          aTCCAGGTGATTTGCGCCTGTGGCTGGACGTACCAGGTATTCAGCGCCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACg                                            >  2:1006693/1‑140 (MQ=255)
                                                                                          aTCCAGGTGATTTGCGCCTGTGGCTGGACGTACCAGGTATTCAGCGCCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACg                                            >  1:69772/1‑140 (MQ=255)
                                                                                           tCCAGGTGATTTGCGCCTGTGGCTGGACGTACCAGGTATTCAGCGCCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACgg                                           >  1:626993/1‑140 (MQ=255)
                                                                                                     ttGCGCCTGTGGCTGGACGTACCAGGTATTCAGCGCCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACGGTTATCGGAAc                                 >  2:685905/1‑140 (MQ=255)
                                                                                                       gcgcCTGTGGCTGGACGTACCAGGTATTCAGCGCCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACGGTTATCGGAACTg                               <  1:1006693/140‑1 (MQ=255)
                                                                                                          ccTGTGGCTGGACGTACCAGGTATTCAGCGCCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACGGTTATCGGAACTGACg                            >  1:314956/1‑140 (MQ=255)
                                                                                                           cTGTGGCTGGACGTACCAGGTATTCAGCGCCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACGGTTATCGGAACTGACGc                           <  1:1044264/140‑1 (MQ=255)
                                                                                                                 cTGGACGTACCAGGTATTCAGCGCCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACGGTTATCGGAACTGACGCTGTTAt                     <  2:494556/140‑1 (MQ=255)
                                                                                                                   ggACGTACCAGGTATTCAGCGCCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACGGTTATCgg                                    >  2:461702/1‑123 (MQ=255)
                                                                                                                   ggACGTACCAGGTATTCAGCGCCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACGGTTATCgg                                    <  1:461702/123‑1 (MQ=255)
                                                                                                                    gACGTACCAGGTATTCAGCGCCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACGGTTATCGGAACTGACGCTGTTATCaa                  <  2:187679/140‑1 (MQ=255)
                                                                                                                    gACGTACCAGGTATTCAGCGCCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACGGTTATCGGAACTGACGCTGTTATCaa                  <  1:295139/140‑1 (MQ=255)
                                                                                                                    gACGTACCAGGTATTCAGCGCCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACGGTTATCGGAACTGACGCTGTTATCaa                  <  1:757985/140‑1 (MQ=255)
                                                                                                                      cGTACCAGGTATTCAGCGCCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACGGTTATCGGAACTGACGCTGTTATCAAAc                <  1:1154933/140‑1 (MQ=255)
                                                                                                                        tACCAGGTATTCAGCGCCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACGGTTATCGGAACTGACGCTGTTATCAAAc                <  2:578705/138‑1 (MQ=255)
                                                                                                                        tACCAGGTATTCAGCGCCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACGGTTATCGGAACTGACGCTGTTATCAAAc                >  1:578705/1‑138 (MQ=255)
                                                                                                                        tACCAGGTATTCAGCGCCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACGGTTATCGGAACTGACGCTGTTATCAAACCa              >  2:671764/1‑140 (MQ=255)
                                                                                                                                    aGCGCCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACGGTTATCGGAACTGACGCTGTTATCAAACCAGTTATACAgcgc  >  2:914943/1‑140 (MQ=255)
                                                                                                                                        |                                                                                                                                       
TTCACCCCAAGTCGCGTTTGCACATTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGTACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACGGTTATCGGAACTGACGCTGTTATCAAACCAGTTATACAGCGC  >  NC_000913/1592945‑1593216

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑