Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,074,362	(C)6→5	coding (2824/3120 nt)	flu →	CP4‑44 prophage; self recognizing antigen 43 (Ag43) autotransporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,074,357	0	C	.	100.0%	300.9 / NA	70	coding (2819/3120 nt)	flu	CP4‑44 prophage; self recognizing antigen 43 (Ag43) autotransporter
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (29/41);  total (29/41)

CAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGCCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAGATATGCGTGTGGGGACTTCCACTGCAGGCAGCGGGAT  >  NC_000913/2074218‑2074489                                                                                                                                            |                                                                                                                                     cAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGc                                                                                                                                      >  1:665565/1‑140 (MQ=255)  aGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGcc                                                                                                                                     <  2:982475/140‑1 (MQ=255)  aGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGcc                                                                                                                                     >  1:947707/1‑140 (MQ=255)  aGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGcc                                                                                                                                     <  1:973509/140‑1 (MQ=255)  aGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGcc                                                                                                                                     <  2:1072905/140‑1 (MQ=255)  aGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGcc                                                                                                                                     >  2:950512/1‑140 (MQ=255)    ggACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGcccc                                                                                                                                   >  1:239118/1‑140 (MQ=255)    ggACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGcccc                                                                                                                                   >  1:85635/1‑140 (MQ=255)    ggACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGcccc                                                                                                                                   >  1:563204/1‑140 (MQ=255)      aCTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccccct                                                                                                                                 >  2:474008/1‑139 (MQ=255)      aCTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccccct                                                                                                                                 >  1:405364/1‑139 (MQ=255)      aCTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGcc                                                                                                                                     <  2:471197/136‑1 (MQ=255)      aCTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGcc                                                                                                                                     >  1:471197/1‑136 (MQ=255)       cTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccccctg                                                                                                                                <  2:239118/140‑3 (MQ=255)         ttCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccccctgcg                                                                                                                              <  1:950512/140‑5 (MQ=255)            ccTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGa                                                                                                                          <  2:563204/140‑1 (MQ=255)            ccTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGa                                                                                                                          <  1:1024986/140‑1 (MQ=255)              tGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACa                                                                                                                        <  2:107987/140‑1 (MQ=255)                      ggTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCaaaa                                                                                                                <  1:382139/140‑1 (MQ=255)                        tAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAaca                                                                                                              <  2:181165/140‑1 (MQ=255)                        tAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAaca                                                                                                              <  1:242453/140‑1 (MQ=255)                          aGGACAACGTCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAAcaca                                                                                                            <  1:116746/140‑1 (MQ=255)                          aGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAAcaca                                                                                                            <  2:405364/140‑1 (MQ=255)                           ggACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAg                                                                                                           <  2:209230/140‑1 (MQ=255)                            gACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAgt                                                                                                          <  2:603289/140‑1 (MQ=255)                            gACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAgt                                                                                                          <  2:649254/140‑1 (MQ=255)                               aaCGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGtgtg                                                                                                       <  1:491221/140‑1 (MQ=255)                                aCGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTgtga                                                                                                      >  2:556992/1‑140 (MQ=255)                                 cGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTgtgag                                                                                                     >  2:844390/1‑140 (MQ=255)                                  gCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTgtgagt                                                                                                    >  2:998083/1‑140 (MQ=255)                                      gTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAAt                                                                                                >  1:649906/1‑140 (MQ=255)                                      gTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAAt                                                                                                <  2:665565/140‑1 (MQ=255)                                      gTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAAt                                                                                                >  1:996213/1‑140 (MQ=255)                                      gTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAAt                                                                                                >  1:291265/1‑140 (MQ=255)                                         aTGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTAc                                                                                             <  2:169120/140‑1 (MQ=255)                                           gtgAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCg                                                                                           <  2:268773/140‑1 (MQ=255)                                            tgAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCgg                                                                                          >  1:15194/1‑140 (MQ=255)                                              aaGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTg                                                                                        <  2:837389/140‑1 (MQ=255)                                                gTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGaa                                                                                      <  1:474008/140‑1 (MQ=255)                                                gTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGaa                                                                                      <  2:649906/140‑1 (MQ=255)                                                 ttCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTgtgag                                                                                                     >  1:268745/1‑124 (MQ=255)                                                 ttCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTgtgag                                                                                                     <  2:268745/124‑1 (MQ=255)                                                 ttCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGaa                                                                                      >  1:638810/1‑139 (MQ=255)                                                 ttCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGaa                                                                                      <  2:638810/139‑1 (MQ=255)                                                 ttCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAAc                                                                                     >  1:191306/1‑140 (MQ=255)                                                   cGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACtg                                                                                   >  2:382154/1‑140 (MQ=255)                                                    gggCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACtgg                                                                                  <  1:998083/140‑1 (MQ=255)                                                            cAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACa                                                                          <  2:654102/140‑1 (MQ=255)                                                              gTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGc                                                                        <  1:565837/140‑1 (MQ=255)                                                              gTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGc                                                                        <  1:844390/140‑1 (MQ=255)                                                               tGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGcc                                                                       >  1:915757/1‑140 (MQ=255)                                                                         gtgcgtgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATc                                                             >  1:794150/1‑140 (MQ=255)                                                                          tgcgtgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATcc                                                            >  1:632238/1‑140 (MQ=255)                                                                           gcgtgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCg                                                           <  2:88889/140‑1 (MQ=255)                                                                           gcgtgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCg                                                           <  2:947707/140‑1 (MQ=255)                                                                            cgtgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGc                                                          <  1:510044/140‑1 (MQ=255)                                                                             gtgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCa                                                         >  1:272276/1‑140 (MQ=255)                                                                              tgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCAc                                                        >  1:743220/1‑140 (MQ=255)                                                                              tgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCAc                                                        >  1:1137252/1‑140 (MQ=255)                                                                                ccGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCt                                                      >  2:195045/1‑140 (MQ=255)                                                                                ccGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCt                                                      >  2:770935/1‑140 (MQ=255)                                                                                ccGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCt                                                      >  1:378104/1‑140 (MQ=255)                                                                                ccGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCt                                                      >  1:174910/1‑140 (MQ=255)                                                                                ccGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCt                                                      >  2:1007508/1‑140 (MQ=255)                                                                                ccGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCt                                                      >  1:824940/1‑140 (MQ=255)                                                                                ccGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCt                                                      >  1:1075325/1‑140 (MQ=255)                                                                                ccGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCt                                                      >  1:673191/1‑140 (MQ=255)                                                                                 cGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCtt                                                     >  2:194234/1‑140 (MQ=255)                                                                                  ggTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTc                                                    <  1:506496/140‑1 (MQ=255)                                                                                   gTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCa                                                   >  2:598150/1‑140 (MQ=255)                                                                                         gTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTccc                                             <  2:915757/140‑1 (MQ=255)                                                                                         gTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTccc                                             <  1:382154/140‑1 (MQ=255)                                                                                         gTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTccc                                             <  1:83111/140‑1 (MQ=255)                                                                                           cTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCgg                                           <  1:195045/140‑1 (MQ=255)                                                                                           cTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCgg                                           <  1:1007508/140‑1 (MQ=255)                                                                                           cTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCgg                                           <  2:174910/140‑1 (MQ=255)                                                                                            tGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCggg                                          <  2:996213/140‑1 (MQ=255)                                                                                             gggCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCgggg                                         <  1:999873/140‑1 (MQ=255)                                                                                               gCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGgag                                       <  2:191306/140‑1 (MQ=255)                                                                                                cAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGgaga                                      <  1:138061/140‑1 (MQ=255)                                                                                                 aGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAGat                                     <  2:378104/140‑1 (MQ=255)                                                                                                            tatGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAGATATGCGTGTggg                          <  2:85635/140‑1 (MQ=255)                                                                                                                     tGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAGATATGCGTGTGGGGACTTCCAc                 >  1:510304/1‑140 (MQ=255)                                                                                                                      ggCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAGATATGCGTGTGGGGACTTCCACt                >  2:793617/1‑140 (MQ=255)                                                                                                                                    aTCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAGATATGCGTGTGGGGACTTCCACTGCAGGCAGCGGGAt  <  1:598150/140‑1 (MQ=255)                                                                                                                                            |                                                                                                                                     CAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGCCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAGATATGCGTGTGGGGACTTCCACTGCAGGCAGCGGGAT  >  NC_000913/2074218‑2074489

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑