| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,568,504 | 0 | T | G | 37.3% | 130.0 / 15.1 | 75 | T6P (ACC→CCC) | mdtM | multidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| Reads supporting (aligned to +/- strand): ref base T (10/37); new base G (28/0); total (38/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.90e-12 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAAC > NC_000913/4568366‑4568643 | cagGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑Ta > 2:892371/1‑140 (MQ=255) ccAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑Taaaaaaa < 1:664884/140‑1 (MQ=255) aGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACg < 1:128563/140‑1 (MQ=255) aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑Gaaaaaaaacag > 2:403457/1‑136 (MQ=255) aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑Gaaaaaaaaacg > 2:716854/1‑136 (MQ=255) gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCa < 1:892371/140‑1 (MQ=255) aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGATaaaaaaaatggggc > 2:669632/1‑133 (MQ=255) cGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATaaca < 2:885533/140‑1 (MQ=255) cGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATaaca < 2:724328/140‑1 (MQ=255) ggCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAAGGGCATaacaa > 2:3563/1‑140 (MQ=255) gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGGATaacaaa > 2:184183/1‑140 (MQ=255) tAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAaacaac > 1:1013812/1‑140 (MQ=255) tAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAATGGGATAaaaaacaaa > 2:181986/1‑139 (MQ=255) cACGTACCACCTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTg < 2:1013812/140‑1 (MQ=255) cGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTc > 1:104792/1‑140 (MQ=255) aCCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCgg < 1:1033162/140‑1 (MQ=255) caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑aa < 1:188957/140‑1 (MQ=255) caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑aa < 1:799454/140‑1 (MQ=255) caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAACGGCAAAACAAAAAAATCCCTGTCCGGGG‑aa > 2:188957/1‑140 (MQ=255) aTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACACAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AAc < 2:74275/140‑1 (MQ=255) tAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGT‑GAAAAAAAAGGGGCATAAAAAAAAAATCCCTTTCCGGAG‑GAccc > 2:99710/1‑140 (MQ=255) tGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCaa > 1:432826/1‑140 (MQ=255) aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAACGTGGCCTGAAAAACAAAACCTTCTCCCGAG‑GACCCCCAcc > 2:1054484/1‑139 (MQ=255) aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGGGGCATAAAAAAAAACTCCCTGTCCGGAG‑AAcccccaag > 1:193158/1‑136 (MQ=255) cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑ggg > 1:334119/1‑140 (MQ=255) cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGCATAAAAAAAAAAACCTTGTCCCGGG‑AAACCCAAA‑ggg > 2:89333/1‑140 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑gggg > 1:118969/1‑140 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAAAGGGATAAAAAAAAAACCCCTTTCCGGGG‑AACCCCAAC‑gggg > 2:275941/1‑140 (MQ=255) gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑T‑‑AAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACg < 1:241722/140‑1 (MQ=255) tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACg < 1:389784/140‑1 (MQ=255) tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACg < 2:104792/140‑1 (MQ=255) ggATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGAGGCATAAAAAAAAAATCCTTGTCCCGAG‑AACCCCCAC‑GGGGGAAAAGa > 2:962522/1‑140 (MQ=255) gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGaa > 2:903376/1‑140 (MQ=255) gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAA‑‑GGGGGATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGGAAAAGaaaa > 2:241722/1‑139 (MQ=255) gATCAGATCCGTCG‑CAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGCATAACAAACAACCCCCTTTCCGGAG‑GACCCCAAC‑GGGGAAAAAGaaa > 1:680673/1‑140 (MQ=255) aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAAAGTGGCATAAAAAAAAACTCCTTGTCCGGAG‑AACCCCCAC‑GGGGGAAAAGaaa > 1:480588/1‑140 (MQ=255) aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGCATAAAAAAAAAAACCCTTTCCGGAG‑AACCCCCAC‑GGGGGAAAAGaaa > 1:579929/1‑140 (MQ=255) aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGCGGGATAAAAAACAAAACCCTGTCCCGAG‑AAACCCAACAGGGGaaaaaaaa > 2:531540/1‑136 (MQ=255) gATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCa < 1:181986/140‑1 (MQ=255) gATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGGATAACAAACAACTCCTTGTTCGGAG‑AACCCCCAC‑GGGGGAAAAAAAAATCa > 1:820446/1‑140 (MQ=255) aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGGGGGATAAAAAAAAAACCCTTTTCCGGAG‑AACCCCCAC‑CGGGGAAAAGAAAATCaa > 2:844313/1‑140 (MQ=255) ccGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATa < 2:406998/140‑1 (MQ=255) gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACg < 1:400118/128‑1 (MQ=255) gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATAcc < 1:716854/140‑1 (MQ=255) gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATAcc < 2:334119/140‑1 (MQ=255) gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACg > 2:400118/1‑128 (MQ=255) tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAGAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGCATAAAAAACAAATCTTTTTCCAGAG‑AACCCCCAC‑GGGGAAAAAGAAAATCAAAAccc > 2:804464/1‑139 (MQ=255) tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAAAGTGGCATAACAAACAACTCCTTTTCCGGAG‑AAACCCCAA‑GGGGGAAACGAAATTCAATACCg > 2:434695/1‑140 (MQ=255) tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAACGTGGGATAACAAACAACCCCTTGTCCGGAG‑AACCCCAAC‑GGGGGAAAAGAAAATCAATaacc > 2:959083/1‑137 (MQ=255) aGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGCATAAAAAAAAAATCCTTTTCCGGGG‑AACCCCCAC‑GGGGGAAAAGAAAATCAAAACCGTCggg > 2:484191/1‑139 (MQ=255) aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTaa < 1:91654/140‑1 (MQ=255) aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTaa < 1:981283/140‑1 (MQ=255) aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAAAGTGGCATAAAAAAAAAAACCTTGTCCGGAG‑AACCCCCAC‑GGGGGAAAAGAAAATCAATAACGTCGGTaa > 2:981283/1‑140 (MQ=255) aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGGGGGGAAACAAAAAACTCCCTGTCCCGAGAAACCCCAAC‑GGGAAAAAAAAAATT‑AATACCGGCGGGaa > 2:1125058/1‑140 (MQ=255) gcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGaa < 1:484191/140‑1 (MQ=255) aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg < 1:37194/140‑1 (MQ=255) aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGGGGGATAACAAAAAAATCCCTTTCCCGAG‑AAACCCCAC‑GGGGGAAAAGAAAATCAAAAACGTCGGGAATGACGaaaag > 2:549551/1‑138 (MQ=255) tCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAg < 1:549551/140‑1 (MQ=255) tACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGCATAAAAAACAACTCCTTGTCCGGAG‑AACCCCCAC‑GGGGGAAAAGAAAATCAATACCGTCGGGAATGACGAAAAGCAgggg > 2:1038743/1‑138 (MQ=255) tACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGCAAAAAAAAAAAACCCCTTTCCGGAG‑AAACCCCAC‑CGGGGAAACAAAAATCAATACCGTCGGGAATGAAGAAAGGGAgggg > 2:1171548/1‑138 (MQ=255) aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga < 1:1171548/140‑1 (MQ=255) aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga < 1:1038743/140‑1 (MQ=255) aaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAg < 1:962522/140‑1 (MQ=255) tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAggg < 2:15948/140‑1 (MQ=255) cAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGc < 2:1172887/140‑1 (MQ=255) cGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAAc < 1:959083/140‑1 (MQ=255) cGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGCATAAAAAAAAAATCCTTTTCCGGGG‑AACCCCCAA‑GGGGGAAAAGAAAATCAAAACCCTCGGGAATGACGAAAAGCAGGGGGGAAAGGGaaa > 2:891405/1‑139 (MQ=255) ccATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga < 1:804464/140‑1 (MQ=255) cATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTGATGACGAAAGGCAGGTGAGAAGGGCAACgag < 1:275941/140‑1 (MQ=255) tCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc < 1:844313/140‑1 (MQ=255) cAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTa < 2:193158/140‑1 (MQ=255) gCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACt < 1:563456/140‑1 (MQ=255) gTGGCGGCATGGCGGG‑TAAAAAAAAGGGGCATAACAAAAAAATCCTTGTCCGGGG‑AAACCCAAC‑GGGGGAAACGAAAATTAAAACCCTCGGTAAAGAAGAAAAGCAGGGGAGAAGGGCAACGAGACTGCAAATGTACTGa > 2:541228/1‑140 (MQ=255) ggcggcATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAAt < 2:118969/140‑1 (MQ=255) aTGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATg < 2:579929/140‑1 (MQ=255) aTGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATg < 2:480588/140‑1 (MQ=255) tAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAAc < 2:680673/140‑1 (MQ=255) | CAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAAC > NC_000913/4568366‑4568643 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |