Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,707,685	C→T	T256I (ACC→ATC)	rsxC →	SoxR [2Fe‑2S] reducing system protein RsxC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,707,685	0	C	T	100.0%	103.1 / NA	30	T256I (ACC→ATC)	rsxC	SoxR [2Fe‑2S] reducing system protein RsxC
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (13/17);  total (13/17)

GGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTTCTGGCGGTGCTAAACAATTAACCTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTG  >  NC_000913/1707552‑1707807                                                                                                                                      |                                                                                                                           ggCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTTCTGGCGGTGCTAAACAATTAACCTACATTCTGATCGGGaa                                                                                                                      <  1:519875/140‑1 (MQ=255)  gCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTTCTGGCGGTGCTAAACAATTAACCTACATTCTGATCGGGAAg                                                                                                                     <  1:1099520/140‑1 (MQ=255)  gCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTTCTGGCGGTGCTAAACAATTAACCTACATTCTGATCGGGAAg                                                                                                                     <  2:283310/140‑1 (MQ=255)   cATTGAAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTTCTGGCGGTGCTAAACAATTAACCTACATTCTGATCGGGAAGc                                                                                                                    >  1:903940/1‑140 (MQ=255)    aTTGAAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTTCTGGCGGTGCTAAACAATTAACCTACATTCTGATCGGGAAGCa                                                                                                                   <  1:605782/140‑1 (MQ=255)     ttGAAGATAACAAACCGCAGGCGATTTCCATGCTGGGCGCGGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTTCTGGCGGTGCTAAACAATTAACCTACATTCTGATCGGGAAGCAg                                                                                                                  <  2:759697/140‑1 (MQ=255)      tGAAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTTCTGGCGGTGCTAAACAATTAACCTACATTCTGATCGGGAAGCAgg                                                                                                                 <  2:903940/140‑1 (MQ=255)                  aCCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTTCTGGCGGTGCTAAACAATTAACCTACATTCTGATCGGGAAGCAGGTTCCACAt                                                                                                         >  1:1165212/1‑136 (MQ=255)                  aCCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTTCTGGCGGTGCTAAACAATTAACCTACATTCTGATCGGGAAGCAGGTTCCACAt                                                                                                         <  2:1165212/136‑1 (MQ=255)                    cGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTTCTGGCGGTGCTAAACAATTAACCTACATTCTGATCGGGAAGCAGGTTCCACATggcggg                                                                                                   <  2:51628/140‑1 (MQ=255)                      cAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTCCAACTAAATATCCTTCTGGCGGTGCTAAACAATTAACCTACATTCTGATCGGGAAGCAGGTTCCACATggcgggcg                                                                                                 <  2:813051/140‑1 (MQ=255)                       aGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTTCTGGCGGTGCTAAACAATTAACCTACATTCTGATCGGGAAGCAGGTTCCACATGGCGGGCGt                                                                                                >  2:408627/1‑140 (MQ=255)                                        cgcgcgGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTTCTGGCGGTGCTAAACAATTAACCTACATTCTGATCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGt                                                                               >  1:662811/1‑140 (MQ=255)                                        cgcgcgGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTTCTGGCGGTGCTAAACAATTAACCTACATTCTGATCGGGAAGCAGGTTCCACATGGCGGGCGGTCAACCGATATCGGCgg                                                                               >  2:601001/1‑139 (MQ=255)                                         gcgcgGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTTCTGGCGGTGCTAAACAATTAACCTACATTCTGATCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTa                                                                              >  1:172500/1‑140 (MQ=255)                                          cgcgGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTTCTGGCGGTGCTAAACAATTAACCTACATTCTGATCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTAt                                                                             >  1:1106882/1‑140 (MQ=255)                                             ggTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTTCTGGCGGTGCTAAACAATTAACCTACATTCTGATCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTaa                                                                          >  1:421345/1‑140 (MQ=255)                                                         ctctAACGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTTCTGGCGGTGCTAAACAATTAACCTACATTCTGATCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCg                                                              >  2:830855/1‑140 (MQ=255)                                                          tctAACGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTTCTGGCGGTGCTAAACAATTAACCTACATTCTGATCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCgg                                                             <  2:7376/140‑1 (MQ=255)                                                           ctAACGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTTCTGGCGGTGCTAAACAATTAACCTACATTCTGATCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGc                                                            <  2:1146849/140‑1 (MQ=255)                                                           ccaaCGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTTCTGGCGGTGCTAAACAATTAACCTACATTCTGATCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGc                                                            <  2:1083452/138‑1 (MQ=255)                                                                            cGGGTGATTCCAACCAAATATCCTTCTGGCGGTGCTAAACAATTAACCTACATTCTGATCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGaa                                           >  2:360755/1‑140 (MQ=255)                                                                                   ttCCAACCAAATATCCTTCTGGCGGTGCTAAACAATTAACCTACATTCTGATCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGcc                                    <  2:421345/140‑1 (MQ=255)                                                                                             atatCCTTCTGGCGGTGCTAAACAATTAACCTACATTCTGATCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATg                          >  1:373736/1‑140 (MQ=255)                                                                                                        gCGGTGCTAAACAATTAACCTACATTCTGATCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGAtt               >  2:545653/1‑140 (MQ=255)                                                                                                           gTGCTAAACAATTAACCTACATTCTGATCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATAGCGAGCCGATTAcc            >  2:717178/1‑140 (MQ=255)                                                                                                                aaaCAATTAACCTACATTCTGATCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCg       <  1:830855/140‑1 (MQ=255)                                                                                                                aaaCAATTAACCTACATTCTGATCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCg       <  1:360755/140‑1 (MQ=255)                                                                                                                     aTTAACCTACATTCTGATCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGtgttg  <  1:717178/140‑1 (MQ=255)                                                                                                                                   tGATCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGtgttg  <  1:1075083/126‑1 (MQ=255)                                                                                                                                      |                                                                                                                           GGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTTCTGGCGGTGCTAAACAATTAACCTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTG  >  NC_000913/1707552‑1707807

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑