Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	357,555	C→T	intergenic (+101/+236)	codA → / ← cynR	cytosine/isoguanine deaminase/DNA‑binding transcriptional dual regulator CynR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	357,555	0	C	T	100.0%	97.2 / NA	31	intergenic (+101/+236)	codA/cynR	cytosine/isoguanine deaminase/DNA‑binding transcriptional dual regulator CynR
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (17/14);  total (17/14)

GGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGTCTGCCAGCTGTAGT  >  NC_000913/357421‑357679                                                                                                                                       |                                                                                                                             ggAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGTATCAg                                                                                                                         >  2:994410/1‑140 (MQ=255)  gAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGTATCAgg                                                                                                                        >  1:426970/1‑140 (MQ=255)       gcCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGTATCAGGCAAtt                                                                                                                   >  1:950514/1‑140 (MQ=255)              gCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGTATCAGGCAATTCCAGCCg                                                                                                            <  1:508902/140‑1 (MQ=255)                  tCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGTATCAGGCAATTCCAGCCGCTgc                                                                                                        >  1:438806/1‑139 (MQ=255)                                tGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTAGTAGGCCTGATAAGCGTAGCGTATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGc                                                                                          >  1:11915/1‑140 (MQ=255)                                         gggTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGTATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGat                                                                                 <  2:426970/140‑1 (MQ=255)                                                  cGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGTATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTcccc                                                                        >  2:176997/1‑139 (MQ=255)                                                    aGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGTATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGcc                                                                      >  1:741560/1‑140 (MQ=255)                                                      cTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGTATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCcaa                                                                    >  2:254810/1‑140 (MQ=255)                                                              aTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGTATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACcgcg                                                            <  1:994410/140‑1 (MQ=38)                                                               tGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGTATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCcaaca                                                                  <  2:481536/133‑1 (MQ=37)                                                               tGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGTATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCcaaca                                                                  >  1:481536/1‑133 (MQ=37)                                                               tGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGTATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCgcgc                                                           >  1:1004592/1‑140 (MQ=37)                                                                     aTGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGTATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCAt                                                         <  1:400959/136‑1 (MQ=38)                                                                     aTGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGTATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCAt                                                         >  2:400959/1‑136 (MQ=37)                                                                        cggcgTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGTATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCa                                                  <  1:443686/140‑1 (MQ=255)                                                                             tGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGTATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGcc                                             <  1:254810/140‑1 (MQ=255)                                                                               aaCGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGTATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCAt                                           >  1:974419/1‑140 (MQ=255)                                                                                          cGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGTATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATg                                >  2:283296/1‑140 (MQ=255)                                                                                             ccTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGTATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCAt                                           >  1:1029815/1‑126 (MQ=255)                                                                                             ccTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGTATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCAt                                           <  2:1029815/126‑1 (MQ=255)                                                                                                aCGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGTATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCg                          >  1:9308/1‑140 (MQ=255)                                                                                                 cGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGTATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGc                         >  1:471934/1‑140 (MQ=255)                                                                                                      agCACTGAACTCGTAGGCCTGATAAGCGTAGCGTATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCgg                    >  1:300698/1‑140 (MQ=255)                                                                                                           tGAACTCGTAGGCCTGATAAGCGTAGCGTATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTCCAAAAATGCCTTCGCAGCGGCTGTc               >  1:296529/1‑140 (MQ=255)                                                                                                               cTCGTAGGCCTGATAAGCGTAGCGTATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGTCTGcc           <  2:974419/140‑1 (MQ=255)                                                                                                                 cGTAGGCCTGATAAGCGTAGCGTATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGTCTGCCAg         <  1:443142/140‑1 (MQ=255)                                                                                                                 cGTAGGCCTGATAAGCGTAGCGTATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGTCTGCCAg         <  2:741560/140‑1 (MQ=255)                                                                                                                   tAGGCCTGATAAGCGTAGCGTATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGTCTGCCAGCt       <  1:176997/140‑1 (MQ=255)                                                                                                                        cTGATAAGCGTAGCGTATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGTCTGCCAGCTGTAGt  <  2:11915/140‑1 (MQ=255)                                                                                                                        cTGATAAGCGTAGCGTATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGTCTGCCAGCTGTAGt  <  1:283296/140‑1 (MQ=255)                                                                                                                                       |                                                                                                                             GGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGTCTGCCAGCTGTAGT  >  NC_000913/357421‑357679

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑