Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,112,791	T→C	pseudogene (130/867 nt)	yghF ←	putative type II secretion system C‑type protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,112,791	0	T	C	100.0%	230.9 / NA	65	pseudogene (130/867 nt)	yghF	putative type II secretion system C‑type protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (32/33);  total (32/33)

ATCCCACGCAGCACCACATTAAGACGCGTTTCTGCCACAGGCACAGGTTCGGGTTGTTTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGTTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGAAACCGCCGTATATTCCGCAGAAAAGGAGATATAGCGCCAGAGTGAATGCGCCATTTTTGCAGAAATAATAAGCAGCATCAGCCAGAACATCCCGC  >  NC_000913/3112655‑3112925                                                                                                                                         |                                                                                                                                       aTCCCACGCAGCACCACATTAAGACGCGTTTCTGCCACAGGCACAGGTTCGGGTTGTTTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGcttt                                                                                                                                     <  1:955293/140‑1 (MQ=255)     cACGCAGCACCACATTAAGACGCGTTTCTGCCACAGGCACAGGTTCGGGTTGTTTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCa                                                                                                                                 <  1:825221/140‑1 (MQ=255)        gcagcaCCACATTAAGACGCGTTTCTGCCACAGGCACAGGTTCGGGTTGTTTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATcc                                                                                                                              >  1:829013/1‑140 (MQ=255)           gcaCCACATTAAGACGCGTTTCTGCCACAGGCACAGGTTCGGGTTGTTTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCcaca                                                                                                                           <  1:483494/140‑1 (MQ=255)            caccacATTAAGACGCGTTTCTGCCACAGGCACAGGTTCGGGTTGTTTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCacac                                                                                                                          >  1:397013/1‑140 (MQ=255)              ccacATTAAGACGCGTTTCTGCCACAGGCACAGGTTCGGGTTGTTTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACgg                                                                                                                        <  1:853518/140‑1 (MQ=255)              ccacATTAAGACGCGTTTCTGCCACAGGCACAGGTTCGGGTTGTTTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACgg                                                                                                                        <  2:487598/140‑1 (MQ=255)               cacaTTAAGACGCGTTTCTGCCACAGGCACAGGTTCGGGTTGTTTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGc                                                                                                                       >  2:592578/1‑140 (MQ=255)                 caTTAAGACGCGTTTCTGCCACAGGCACAGGTTCGGGTTGTTTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTc                                                                                                                     <  2:805361/140‑1 (MQ=255)                 caTTAAGACGCGTTTCTGCCACAGGCACAGGTTCGGGTTGTTTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTc                                                                                                                     <  2:397013/140‑1 (MQ=255)                    tAAGACGCGTTTCTGCCACAGGCACAGGTTCGGGTTGTTTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGt                                                                                                                  >  2:982769/1‑140 (MQ=255)                    tAAGACGCGTTTCTGCCACAGGCACAGGTTCGGGTTGTTTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGt                                                                                                                  <  2:731288/140‑1 (MQ=255)                      aGACGCGTTTCTGCCACAGGCACAGGTTCGGGTTGTTTTACCTGCGCGGCGACAGGCTGATATTTGTCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGttt                                                                                                                >  1:238387/1‑140 (MQ=255)                      aGACGCGTTTCTGCCACAGGCACAGGTTCGGGTTGTTTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGttt                                                                                                                >  2:498940/1‑140 (MQ=255)                        aCGCGTTTCTGCCACAGGCACAGGTTCGGGTTGTTTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCacac                                                                                                                          >  1:1004446/1‑128 (MQ=255)                        aCGCGTTTCTGCCACAGGCACAGGTTCGGGTTGTTTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCacac                                                                                                                          <  2:1004446/128‑1 (MQ=255)                         cgcgTTTCTGCCACAGGCACAGGTTCGGGTTGTTTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCcaca                                                                                                                           >  2:220826/1‑126 (MQ=255)                         cgcgTTTCTGCCACAGGCACAGGTTCGGGTTGTTTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCcaca                                                                                                                           <  1:220826/126‑1 (MQ=255)                         cgcgTTTCTGCCACAGGCACAGGTTCGGGTTGTTTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTc                                                                                                                     <  1:621006/132‑1 (MQ=255)                         cgcgTTTCTGCCACAGGCACAGGTTCGGGTTGTTTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTc                                                                                                                     >  2:621006/1‑132 (MQ=255)                           cgTTTCTGCCACAGGCACAGGTTCGGGTTGTTTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCa                                                                                                           <  2:32601/140‑1 (MQ=255)                            gTTTCTGCCACAGGCACAGGTTCGGGTTGTTTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCAc                                                                                                          >  1:777208/1‑140 (MQ=255)                            gTTTCTGCCACAGGCACAGGTTCGGGTTGTTTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCAc                                                                                                          <  1:592578/140‑1 (MQ=255)                             tttCTGCCACAGGCACAGGTTCGGGTTGTTTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCAcc                                                                                                         >  2:139221/1‑140 (MQ=255)                                    cacaggcacaggTTCGGGTTGTTTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTgag                                                                                                  <  2:735164/140‑1 (MQ=255)                                       aggcccaggTTCGGGTTTTTTTCCCTGCGGGGGGAAAGGCTTATTTTTGCCAAACCATTTTTGCTGGCTGATTAATTGCCCGTCATTTTTATCGAACGCTTTTGCACCCACACGGCTCGGTTTATTCACCGGTTGAGaaa                                                                                               <  2:538900/140‑1 (MQ=255)                                       aggcacaggTTCGGGTTGTTTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGaaa                                                                                               <  2:93454/140‑1 (MQ=255)                                         gcacaggTTCGGGTTGTTTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGAAAcc                                                                                             <  1:740226/140‑1 (MQ=255)                                         gcacaggTTCGGGTTGTTTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGAAAcc                                                                                             <  1:139221/140‑1 (MQ=255)                                            caggTTCGGGTTGTTTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCCCACGGCTCGGTTTATTCACCGGTTGAGAAAccgcc                                                                                          <  1:866332/140‑1 (MQ=255)                                                   gggTTGTTTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGAAACCGCCGTATAtt                                                                                   >  2:828457/1‑140 (MQ=255)                                                    ggTTGTTTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGaaa                                                                                               <  2:125455/127‑1 (MQ=255)                                                    ggTTGTTTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGaaa                                                                                               >  1:125455/1‑127 (MQ=255)                                                    ggTTGTTTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGAAACCGCCGTATATTc                                                                                  >  1:627550/1‑140 (MQ=255)                                                    ggTTGTTTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGAAACCGCCGTATATTc                                                                                  >  1:716739/1‑140 (MQ=255)                                                     gttgttTTACCTGCGCGGCGACAGGGTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGAAACCGCCGGatatctg                                                                                 >  1:548016/1‑137 (MQ=255)                                                      ttgttTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGAAACCGCCGTATATTCCg                                                                                <  2:627550/140‑1 (MQ=255)                                                        gttTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGAAACCGCCGTATATTCCGCa                                                                              <  1:982769/140‑1 (MQ=255)                                                          tttACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCCCCGGTTGAGAAACCGCCGTATATTCCGCAGa                                                                            <  1:828457/140‑1 (MQ=255)                                                          tttACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGAAACCGCCGTATATTCCGCAGa                                                                            <  1:498940/140‑1 (MQ=255)                                                            tACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCGGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGAAACCGCCGTATATTCCGCAGaaa                                                                          <  2:894235/140‑1 (MQ=255)                                                              ccTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGAAACCGCCGTATATTCCGCa                                                                              <  1:619520/134‑1 (MQ=255)                                                              ccTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGAAACCGCCGTATATTCCGCa                                                                              >  2:619520/1‑134 (MQ=255)                                                              ccTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGAAACCGCCGTATATTCCGCAGAAAAg                                                                        >  1:859655/1‑140 (MQ=255)                                                                   gcggcgACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGAAACCGCCGTATATTCCGCAGAAAAGGAGat                                                                   >  2:749210/1‑140 (MQ=255)                                                                   gcggcgACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGAAACCGCCGTATATTCCGCAGAAAAGGAGat                                                                   >  2:551020/1‑140 (MQ=255)                                                                      gcgACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGAAACCGCCGTATATTCCGCAGAAAAGGAGAtata                                                                <  2:716739/140‑1 (MQ=255)                                                                             gCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGAAACCGCCGTATATTCCGCAGAAAAGGAGATATAGCGCCag                                                         >  1:518590/1‑140 (MQ=255)                                                                               tGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGAAACCGCCGTATATTCCGCAGAAAAGGAGATATAGCGCCagag                                                       >  1:133970/1‑140 (MQ=255)                                                                                 atatTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGAAACCGCCGTATATTCCGCAGAAAAGGAGATATAGCGCCAGAGTg                                                     >  1:840163/1‑140 (MQ=255)                                                                                  tatTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACCCGGCTCGGTTTATTCACCGGTTGAAAAACCGCCGTATATTCCGCAGAAAAGGAGATATAGCGCCAGAGTGa                                                    <  2:228798/140‑1 (MQ=255)                                                                                       gCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGAAACCGCCGTATATTCCGCAGAAAAGGAGATATAGCGCCAGAGTGAATgcg                                               >  1:97844/1‑140 (MQ=255)                                                                                       gCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGAAACCGCCGTATATTCCGCAGAAAAGGAGATATAGCGCCAGAGTGAATgcg                                               >  2:248272/1‑140 (MQ=255)                                                                                       gCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGAAACCGCCGTATATTCCGCAGAAAAGGAGATATAGCGCCAGAGTGAATgcg                                               >  2:210424/1‑140 (MQ=255)                                                                                       gCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGAAACCGCCGTATATTCCGCAGAAAAGGAGATATAGCGCCAGAGTGAATgcg                                               >  1:913947/1‑140 (MQ=255)                                                                                                tttttGCTGGCTGATTATTTGCACGTCATTTTTATCGAACGCTTTGGCATCCCCACGGCTCGGTTTATCCACCGTTTGAGAAACCGCCGTATATTCCGCAGAAAAGGAGATATAGCGCCAGAGTGAATGCGCCATTTTTg                                      <  2:829013/139‑1 (MQ=255)                                                                                                   ttGCTGGCTGATTAATTGCACGTCATTTTTATCGACCGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGAAACCGCCGTATATTCCGCAGAAAAGGAGATATAGCGCCAGAGTGAATGCGCCATTTTTGCAg                                   <  2:54472/140‑1 (MQ=255)                                                                                                      ctggctgATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGAAACCGCCGTATATTCCGCAGAAAAGGAGATATAGCGCCAGAGTGAATGCGCCAt                                           >  2:395744/1‑129 (MQ=255)                                                                                                      ctggctgATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGAAACCGCCGTATATTCCGCAGAAAAGGAGATATAGCGCCAGAGTGAATGCGCCAt                                           <  1:395744/129‑1 (MQ=255)                                                                                                           tgATTAATTGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGAAACCGCCGTATATTCCGCAGAAAAGGAGATATAGCGCCAGAGTGAATGCGCCATTTTTGCAGAAataata                           >  1:391993/1‑140 (MQ=255)                                                                                                                  ttGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGAAACCGCCGTATATTCCGCAGAAAAGGAGATATAGCGCCAGAGTGAATGCGCCATTTTTGCAGAAATAATAAgcagca                    <  2:777208/140‑1 (MQ=255)                                                                                                                  ttGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGAAACCGCCGTATATTCCGCAGAAAAGGAGATATAGCGCCAGAGTGAATGCGCCATTTTTGCAGAAATAATAAgcagca                    <  2:913947/140‑1 (MQ=255)                                                                                                                  ttGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGAAACCGCCGTATATTCCGCAGAAAAGGAGATATAGCGCCAGAGTGAATGCGCCATTTTTGCAGAAATAATAAgcagca                    <  1:210424/140‑1 (MQ=255)                                                                                                                   tGCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGAAACCGCCGTATATTCCGCAGAAAAGGAGATATAGCGCCAGAGTGAATGCGCCATTTTTGCAGAAATAATAAGCAGCAt                   >  2:1073749/1‑140 (MQ=255)                                                                                                                    gCACGTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGAAACCGCCGTATATTCCGCAGAAAAGGAGATATAGCGCCAGAGTGAATGCGCCATTTTTGCAGAAATAATAAGCAGCATc                  >  1:609442/1‑140 (MQ=255)                                                                                                                        gTCATTTTTATCGAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGAAACCGCCGTATATTCCGCAGAAAAGGAGATATAGCGCCAGAGTGAATGCGCCATTTTTGCAGAAATAATAAGCAGCATCAGcc              <  2:97844/140‑1 (MQ=255)                                                                                                                                    gAACGCTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGAAACCGCCGTATATTCCGCAGAAAAGGAGATATAGCGCCAGAGTGAATGCGCCATTTTTGCAGAAATAATAAGCAGCATCAGCCAGAACATCCcgc  >  1:706022/1‑140 (MQ=255)                                                                                                                                         |                                                                                                                                       ATCCCACGCAGCACCACATTAAGACGCGTTTCTGCCACAGGCACAGGTTCGGGTTGTTTTACCTGCGCGGCGACAGGCTGATATTTGCCAAACCAGTTTTGCTGGCTGATTAATTGCACGTCATTTTTATCGAACGTTTTTGCATCCACACGGCTCGGTTTATTCACCGGTTGAGAAACCGCCGTATATTCCGCAGAAAAGGAGATATAGCGCCAGAGTGAATGCGCCATTTTTGCAGAAATAATAAGCAGCATCAGCCAGAACATCCCGC  >  NC_000913/3112655‑3112925

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑