New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2584986	42 (0.660)	3 (0.050)	3/276	6.3	7.3%	coding (540/1980 nt)	aegA	putative oxidoreductase Fe‑S subunit AegA
	?	NC_000913	= 2585056	34 (0.530)					coding (470/1980 nt)	aegA	putative oxidoreductase Fe‑S subunit AegA
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCGCGAGGCTTCCCGTTGTGCCTGGTCGGCGCGAAATGGCAGATAAATTTCATCAAAACCGGTTTTGCGCGCTTCAATCGCCAGTTTATCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTGCGCCGCGGTACTGGCATGCCACGGTTGATGTTCCTGACGCGCGGTGCGCAAGCGGCGGGATTTCGCCATGCCGGAGAGTGCGACGTCAGTGACCAGTTGCAGCGCGTCCGCCGGGCAATTCTCAA  >  NC_000913/2584848‑2585125                                                                                                                                           |                                                                                                                                            gcgcGAGGCTTCCCGTTGTGCCTGGTCGGCGCGAAATGGCAGATAAATTTCATCAAAACCGGTTTTGCGCGCTTCAATCGCCAGTTTATCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTACTCATTa                                                                                                                                            <  2:85240/140‑1 (MQ=255)  cgcgAGGCTTCCCGTTGTGCCTGGTCGGCGGGAAATGGCAGATAAATTTCTTGAAAACCGGGTTTGGGCGCTTAAATCGCCAGTTTATCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTAGTCAttgc                                                                                                                                           >  2:880307/1‑138 (MQ=255)   gcgAGGCTTCCCGTTGTGCCTGGTCGGCGCGAAATGGCAGATAAATTTCATCAAAACCGGTTTTGCGCGCTTCAATCGCCAGTTTATCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTACTCATTAcc                                                                                                                                          <  2:515908/140‑1 (MQ=255)      aGGCTTCCCGTTGTGCCTGGTCGGCGCGAAATGGCAGATAAATTTCATCAAAACCGGTTTTGCGCGCTTCAATCGCCAGTTTATCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTACTCATTACCGGc                                                                                                                                       <  2:392693/140‑1 (MQ=255)                   tgCCTGGTCGGCGCGAAATGGCAGATAAATTTCATCAAAACCGGTTTTGCGCGCTTCAATCGCCAGTTTATCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTGcgccg                                                                                                                          <  2:286212/140‑1 (MQ=255)                   tgCCTGGTCGGCGCGAAATGGCAGATAAATTTCATCAAAACCGGTTTTGCGCGCTTCAATCGCCAGTTTATCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTGcgccg                                                                                                                          <  1:246908/140‑1 (MQ=255)                   tgCCTGGTCGGCGCGAAATGGCAGATAAATTTCATCAAAACCGGTTTTGCGCGCTTCAATCGCCAGTTTATCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTGcgccg                                                                                                                          >  2:286573/1‑140 (MQ=255)                   tgCCTGGTCGGCGCGAAATGGCAGATAAATTTCATCAAAACCGGTTTTGCGCGCTTCAATCGCCAGTTTATCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTGcgccg                                                                                                                          <  1:336289/140‑1 (MQ=255)                   tgCCTGGTCGGCGCGAAATGGCAGATAAATTTCATCAAAACCGGTTTTGCGCGCTTCAATCGCCAGTTTATCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTGcgccg                                                                                                                          <  2:577781/140‑1 (MQ=255)                   tgCCTGGTCGGCGCGAAATGGCAGATAAATTTCATCAAAACCGGTTTTGCGCGCTTCAATCGCCAGTTTATCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTGcgccg                                                                                                                          <  1:113103/140‑1 (MQ=255)                   tgCCTGGTCGGCGCGAAATGGCAGATAAATTTCATCAAAACCGGTTTTGCGCGCTTCAATCGCCAGTTTATCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTGcgccg                                                                                                                          <  1:669447/140‑1 (MQ=255)                     ccTGGTCGGCGCGAAATGGCAGATAAATTTCATCAAAACCGGTTTTGCGCGCTTCAATCGCCAGTTTATCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTGCGCcgcg                                                                                                                        >  1:602496/1‑140 (MQ=255)                        gggcGGCGCGAAATGGCAGATAAATTTCATCAAAACCGGTTTTGCGCGCTTCAATCGCCAGTTTATCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTGCGCCGCGGTa                                                                                                                     <  2:1011473/137‑1 (MQ=255)                        ggTCGGCGCGAAATGGCAGATAAATTTCATCAAAACCGGTTTTGCGCGCTTCAATCGCCAGTTTATCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTGCGCCGCGGTa                                                                                                                     <  1:305712/140‑1 (MQ=255)                          tCGGCGCGAAATGGCAGATAAATTTCATCAAAACCGGTTTTGCGCGCTTCAATCGCCAGTTTATCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTgcgc                                                                                                                            <  1:617485/131‑1 (MQ=255)                          tCGGCGCGAAATGGCAGATAAATTTCATCAAAACCGGTTTTGCGCGCTTCAATCGCCAGTTTATCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTgcgc                                                                                                                            >  2:617485/1‑131 (MQ=255)                          tCGGCGCGAAATGGCAGATAAATTTCATCAAAACCGGTTTTGCGCGCTTCAATCGCCAGTTTATCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTGCGCCGCGGTACt                                                                                                                   >  1:5891/1‑140 (MQ=255)                             gcgcGAAATGGCAGATAAATTTCATCAAAACCGGTTTTGCGCGCTTCAATCGCCAGTTTATCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTGCGCCGCGGTACTgg                                                                                                                 >  2:460513/1‑139 (MQ=255)                             gcgcGAAATGGCAGATAAATTTCATCAAAACCGGTTTTGCGCGCTTCAATCGCCAGTTTATCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTGCGCCGCGGTACTgg                                                                                                                 <  1:460513/139‑1 (MQ=255)                             gcgcGAAATGGCAGATAAATTTCATCAAAACCGGTTTTGCGCGCTTCAATCGCCAGTTTATCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTGCGCCGCGGTACTGGc                                                                                                                >  2:482286/1‑140 (MQ=255)                             gcgcGAAATGGCAGATAAATTTCATCAAAACCGGTTTTGCGCGCTTCAATCGCCAGTTTATCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTGCGCCGCGGTACTGGc                                                                                                                >  1:708264/1‑140 (MQ=255)                                   aaTGGCAGATAAATTTCATCAAAACCGGTTTTGCGCGCTTCAATCGCCAGTTTATCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTTCTCATTACCGGCATTTCTTGCGCCGCGGTACTGGCATGCCa                                                                                                          <  1:286573/140‑1 (MQ=255)                                        cAGATAAATTTCATCAAAACCGGTTTTGCGCGCTTCAATCGCCAGTTTATCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTGCGCCGCGGTACTGGCATGCCACGGtt                                                                                                     <  1:897285/140‑1 (MQ=255)                                         aGATAAATTTCATCAAAACCGGTTTTGCGCGCTTCAATCGCCAGTTTATCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTGCGCCGCGGTACTGGCATGCCACGGTTg                                                                                                    <  1:478671/140‑1 (MQ=255)                                          gATAAATTTCATCAAAACCGGTTTTGCGCGCTTCAATCGCCAGTTTATCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTGCGCCGCGGTACTGGCATGCCACGGTTGa                                                                                                   <  1:482286/140‑1 (MQ=255)                                                           ccGGTTTTGCGCGCTTCAATCGCCAGTTTATCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTGCGCCGCGGTACTGGCATGCCACGGTTGa                                                                                                   <  1:230413/123‑1 (MQ=255)                                                           ccGGTTTTGCGCGCTTCAATCGCCAGTTTATCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTGCGCCGCGGTACTGGCATGCCACGGTTGa                                                                                                   >  2:230413/1‑123 (MQ=255)                                                                  tGCGCGCTTCAATCGCCAGTTTATCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTGCGCCGCGGTACTGGCATGCCACGGTTGATGTTCCTGACGCGCGGTGCGCAAg                                                                           >  2:632214/1‑140 (MQ=255)                                                                        cTTCAATCGCCAGTTTATCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTGCGCCGCGGTACTGGCATGCCACGGTTGATGTTCCTGACGCGCGGTGCGCAAGcggcgg                                                                     >  1:86713/1‑140 (MQ=255)                                                                          tCAATCGCCAGTTTATCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTGCGCCGCGGTACTGGCATGCCACGGTTGATGTTCCTGACGCGCGGTGCGCAAGCGGCGGGa                                                                   <  1:745078/140‑1 (MQ=255)                                                                               cGCCAGTTTATCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTGCGCCGCGGTACTGGCATGCCACGGTTGATGTTCCTGACGCGCGGTGCGCAAGCGGCGGGATTTCg                                                              <  1:792732/140‑1 (MQ=255)                                                                               cGCCAGTTTATCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTGCGCCGCGGTACTGGCATGCCACGGTTGATGTTCCTGACGCGCGGTGCGCAAGCGGCGGGATTTCg                                                              <  1:700790/140‑1 (MQ=255)                                                                               cGCCAGTTTATCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTGCGCCGCGGTACTGGCATGCCACGGTTGATGTTCCTGACGCGCGGTGCGCAAGCGGCGGGATTTCg                                                              <  1:549386/140‑1 (MQ=255)                                                                               cGCCAGTTTATCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTGCGCCGCGGTACTGGCATGCCACGGTTGATGTTCCTGACGCGCGGTGCGCAAGCGGCGGGATTTCg                                                              <  2:910937/140‑1 (MQ=255)                                                                                        aTCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTGCGCCGCGGTACTGGCATGCCACGGTTGATGTTCCTGACGCGCGGTGCGCAAGCGGCGGGATTTCGCCATGCCgg                                                     <  2:708264/140‑1 (MQ=255)                                                                                                       cgcgGGCGTTGCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTGCGCCGCGGTACTGGCATGCCACGGTTGATGTTCCTGACGCGCGGTGCGCAAGCGGCGGGATTTCGCCATGCCGGAGAGTGCGACGTCAg                                      <  1:873277/140‑1 (MQ=255)                                                                                                       cgcgGGCGTTGCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTGCGCCGCGGTACTGGCATGCCACGGTTGATGTTCCTGACGCGCGGTGCGCAAGCGGCGGGATTTCGCCATGCCGGAGAGTGCGACGTCAg                                      <  1:632214/140‑1 (MQ=255)                                                                                                                tGCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTGCGCCGCGGTACTGGCATGCCACGGTTGATGTTCCTGACGCGCGGTGCGCAAGCGGCGGGATTTCGCCATGCCGGAGAGTGCGACGTCAGTGACCAGtt                             >  2:837011/1‑140 (MQ=255)                                                                                                                 gCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTGCGCCGCGGTACTGGCATGCCACGGTTGATGTTCCTGACGCGCGGTGCGCAAGCGGCGGGATTTCGCCATGCCGGAGAGTGCGa                                            >  2:409733/1‑124 (MQ=255)                                                                                                                 gCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTGCGCCGCGGTACTGGCATGCCACGGTTGATGTTCCTGACGCGCGGTGCGCAAGCGGCGGGATTTCGCCATGCCGGAGAGTGCGa                                            <  1:409733/124‑1 (MQ=255)                                                                                                                      cATTTGTTCGACTTTACTCATTACCGGCATTTCTTGCGCCGCGGTACTGGCATGCCACGGTTGATGTTCCTGAGGCGCGGTGCGCAAGCGGCGGGATTTCGCCATGCCGGAGAGTGCGACGTCAGTGACCAGTTGCAgcg                       >  2:941301/1‑140 (MQ=255)                                                                                                                                   ttACTCATTACCGGCATTTCTTGCGCCGCGGTACTGGCATGCCACGGTTGATGTTCCTGACGCGCGGTGCGCAAGCGGCGGGATTTCGCCATGCCGGAGAGTGCGACGTCAGTGACCAGTTGCAGCGCGTCCGCCGGGCa          <  2:602496/140‑1 (MQ=255)                                                                                                                                           tACCGGCATTTCTTGCGCCGCGGTACTGGCATGCCACGGTTGATGTTCCTGACGCGCGGTGCGCAAGCGGCGGGATTTCGCCATGCCGGAGAGTGCGACGTCAGTGACCAGTTGCAGCGCGTCCGCCGGGCAATTCTCaa  >  2:40484/1‑140 (MQ=255)                                                                                                                                           |                                                                                                                                            GCGCGAGGCTTCCCGTTGTGCCTGGTCGGCGCGAAATGGCAGATAAATTTCATCAAAACCGGTTTTGCGCGCTTCAATCGCCAGTTTATCCGGCTCGCCACGCGCGGGCGTTGCCTGCATTTGTTCGACTTTACTCATTACCGGCATTTCTTGCGCCGCGGTACTGGCATGCCACGGTTGATGTTCCTGACGCGCGGTGCGCAAGCGGCGGGATTTCGCCATGCCGGAGAGTGCGACGTCAGTGACCAGTTGCAGCGCGTCCGCCGGGCAATTCTCAA  >  NC_000913/2584848‑2585125

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.