Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,187,117	A→G	intergenic (+47/+2)	pepT → / ← roxA	peptidase T/ribosomal protein‑arginine oxygenase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,187,117	0	A	G	100.0%	138.4 / NA	39	intergenic (+47/+2)	pepT/roxA	peptidase T/ribosomal protein‑arginine oxygenase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (23/16);  total (23/16)

AAGCATGAGTTTGTGACTCTGGAAGGTATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAGCGCAATGTTGCTGGCGAGTGCATCCAGTGCCGGA  >  NC_000913/1186984‑1187251                                                                                                                                      |                                                                                                                                       aaGCATGAGTTTGTGACTCTGGAAGGTATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAGCTTAcc                                                                                                                                  <  2:807710/140‑1 (MQ=255)  aGCATGAGTTTGTGACTCTGGAAGGTATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAGCTTAccc                                                                                                                                 >  2:71299/1‑140 (MQ=255)    cATGAGTTTGTGACTCTGGAAGGTATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAGCTTACCCtt                                                                                                                               >  1:120214/1‑140 (MQ=255)      tGAGTTTGTGACTCTGGAAGGTATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAGCTTACCCTTCg                                                                                                                             >  2:516627/1‑140 (MQ=255)       gAGTTTGTGACTCTGGAAGGTATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACAGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAGCTTACCCTTCga                                                                                                                            >  2:954369/1‑140 (MQ=255)        aGTTTGTGACTCTGGAAGGTATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAGCTTACCCTTCgaa                                                                                                                           >  2:653706/1‑140 (MQ=255)        aGTTTGTGACTCTGGAAGGTATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAGCTTACCCTTCgaa                                                                                                                           >  1:411381/1‑140 (MQ=255)                   ttGGAAGGTATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGTAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAGCTTACCCTTCGAAAAACCAATAcc                                                                                                                <  2:837338/139‑1 (MQ=255)                   ctGGAAGGTATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAGCTTACCCTTCGAAGAACCAATAcc                                                                                                                >  1:924461/1‑140 (MQ=255)                   ctGGAAGGTATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAGCTTACCCTTCGAAGAACCAATAcc                                                                                                                <  2:411381/140‑1 (MQ=255)                   ctGGAAGGTATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAGCTTACCCTTCGAAGAACCAATAcc                                                                                                                <  1:653706/140‑1 (MQ=255)                            aTGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAGCTTACCCTTCGAAGAACCAATACCCGCTATTGa                                                                                                       >  1:843565/1‑140 (MQ=255)                             tGGAAAAAGCGGTGCAGGTGATCGTCCGAATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAGCTTACCCTTCGAAGAACCAATACCCGCTATTGAc                                                                                                      >  1:704456/1‑140 (MQ=255)                              ggAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAGCTTACCCTTCGAAGAACCAATACCCGCTATTGAcc                                                                                                     >  1:623153/1‑140 (MQ=255)                                     gCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAGCTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGcgccg                                                                                              >  2:339031/1‑140 (MQ=255)                                     gCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAGCTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGcgccg                                                                                              >  1:347022/1‑140 (MQ=255)                                       ggTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAGCTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCcgcg                                                                                            >  1:8730/1‑140 (MQ=255)                                                       cGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAGCTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATg                                                                            <  1:516627/140‑1 (MQ=255)                                                        gTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAGCTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGa                                                                           >  2:492448/1‑140 (MQ=255)                                                            tGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAGCTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGACGGa                                                                       >  1:584165/1‑140 (MQ=255)                                                                gAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAGCTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGACGGATCtt                                                                   >  2:156630/1‑140 (MQ=255)                                                                            cAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAGCTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGc                                                       >  2:1084447/1‑140 (MQ=255)                                                                             aaCGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAGCTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGcc                                                      >  1:206315/1‑140 (MQ=255)                                                                               cGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAGCTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCaa                                                    >  2:831706/1‑140 (MQ=255)                                                                                 gAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAGCTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCaaaa                                                  <  2:347022/140‑1 (MQ=255)                                                                                  aaGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAGCTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAAt                                                 <  1:156630/140‑1 (MQ=255)                                                                                       aGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAGCTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTcc                                            <  1:339031/140‑1 (MQ=255)                                                                                                          tgtgATGCCGCATCCGGCTTAAATCCAAGCTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAGCGCAATGTTGc                         <  1:74856/140‑1 (MQ=255)                                                                                                            tgATGCCGCATCCGGCTTAAATCCAAGCTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAGCGCAATGTTGCTg                       >  1:94278/1‑140 (MQ=255)                                                                                                             gATGCCGCATCCGGCTTAAATCCAAGCTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAGCGCAATGTTGCTgg                      <  1:371880/140‑1 (MQ=255)                                                                                                             gATGCCGCATCCGGCTTAAATCCAAGCTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAGCGCAATGTTGCTgg                      <  1:802958/140‑1 (MQ=255)                                                                                                               tGCCGCATCCGGCTTAAATCCAAGCTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAGCGCAATGTTGCTGGCg                    <  2:292959/140‑1 (MQ=255)                                                                                                                gCCGCATCCGGCTTAAATCCAAGCTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAGCGCAATGTTGCTGGCGa                   >  2:339557/1‑140 (MQ=255)                                                                                                                gCCGCATCCGGCTTAAATCCAAGCTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAGCGCAATGTTGCTGGCGa                   >  1:108816/1‑140 (MQ=255)                                                                                                                  cGCATCCGGCTTAAATCCAAGCTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAGCGCAATGTTGCTGGCGAGt                 <  1:1084447/140‑1 (MQ=255)                                                                                                                    cATCCGGCTTAAATCCAAGCTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAGCGCAATGTTGCTGGCGAGTGc               >  2:179717/1‑140 (MQ=255)                                                                                                                       ccGGCTTAAATCCAAGCTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAGCGCAATGTTGCTGGCGAGTGCATc            <  2:704456/140‑1 (MQ=255)                                                                                                                                 tCCAAGCTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAGCGCAATGTTGCTGGCGAGTGCATCCAGTGCCGGa  <  1:179717/140‑1 (MQ=255)                                                                                                                                 tCCAAGCTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAGCGCAATGTTGCTGGCGAGTGCATCCAGTGCCGGa  <  2:8730/140‑1 (MQ=255)                                                                                                                                      |                                                                                                                                       AAGCATGAGTTTGTGACTCTGGAAGGTATGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAGCGCAATGTTGCTGGCGAGTGCATCCAGTGCCGGA  >  NC_000913/1186984‑1187251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑