Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,596,491	A→G	pseudogene (1596/5422 nt)	yneO ←	AIDA‑I family autotransporter YneO

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,596,491	0	A	G	100.0%	313.3 / NA	87	pseudogene (1596/5422 nt)	yneO	AIDA‑I family autotransporter YneO
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (45/42);  total (45/42)

CGCGCTTTAACTATACCTCCGGTGGTAATATTCAGTTCACCCGTGCCTAATACACCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTACCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCATCAGG  >  NC_000913/1596357‑1596626                                                                                                                                       |                                                                                                                                        cgcgCTTTAACTATACCTCCGGTGGTAATATTCAGTTCACCCGTGCCTAATACACCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGa                                                                                                                                    <  2:811372/140‑1 (MQ=255)    gcTTTAACTATACCTCCGGTGGTAATATTCAGTTCACCCGTGCCTAATACACCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGc                                                                                                                                 >  2:992701/1‑140 (MQ=255)    gcTTTAACTATACCTCCGGTGGTAATATTCAGTTCACCCGTGCCTAATACACCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGc                                                                                                                                 >  2:342974/1‑140 (MQ=255)      tttAACTATACCTCCGGTGGTAATATTCAGTTCACCCGTGCCTAATACACCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCAt                                                                                                                               <  2:301591/140‑1 (MQ=255)          aCTATACCTCCGGTGGTAATATTCAGTTCACCCGTGCCTAATACACCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTtcc                                                                                                                           <  1:992701/140‑1 (MQ=255)           cTATACCTCCGGTGGTAATATTCAGTTCACCCGTGCCTAATACACCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTtcct                                                                                                                          <  2:814948/140‑1 (MQ=255)              taCCTCCGGTGGTAATATTCAGTTCACCCGTGCCTAATACACCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCg                                                                                                                       >  2:653737/1‑140 (MQ=255)              taCCTCCGGTGGTAATATTCAGTTCACCCGTGCCTAATACACCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCg                                                                                                                       >  2:594183/1‑140 (MQ=255)                ccTCCGGTGGTAATATTTAGTTCACCCGTGCCTAATACACCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGAt                                                                                                                     >  2:309331/1‑140 (MQ=255)                ccTCCGGTGGTAATATTCAGTTCACCCGTGCCTAATACACCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGAt                                                                                                                     >  1:1050268/1‑140 (MQ=255)                ccTCCGGTGGTAATATTCAGTTCACCCGTGCCTAATACACCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGAt                                                                                                                     >  1:751483/1‑140 (MQ=255)                ccTCCGGTGGTAATATTCAGTTCACCCGTGCCTAATACACCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGAt                                                                                                                     >  2:442935/1‑140 (MQ=255)                ccTCCGGTGGTAATATTCAGTTCACCCGTGCCTAATACACCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGAt                                                                                                                     >  1:254892/1‑140 (MQ=255)                    cGGTGGTAATATTCAGTTCACCCGTGCCTAATACACCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTtcc                                                                                                                           >  2:448693/1‑130 (MQ=255)                    cGGTGGTAATATTCAGTTCACCCGTGCCTAATACACCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTtcc                                                                                                                           <  1:448693/130‑1 (MQ=255)                    cGGTGGTAATATTCAGTTCACCCGTGCCTAATACACCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAAt                                                                                                                 >  1:641791/1‑140 (MQ=255)                    cGGTGGTAATATTCAGTTCACCCGTGCCTAATACACCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAAt                                                                                                                 >  1:275617/1‑140 (MQ=255)                     ggtggtAATATTCAGTTCACCCGTGCCTAATACACCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATc                                                                                                                >  1:409287/1‑140 (MQ=255)                           aaTATTCAGTTCACCCGTGCCTAATACACCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGc                                                                                                          >  1:683274/1‑140 (MQ=255)                           aaTATTCAGTTCACCCGTGCCTAATACACCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGc                                                                                                          >  1:621550/1‑140 (MQ=255)                               ttCAGTTCACCCGTGCCTAATACACCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGt                                                                                                      <  2:549869/140‑1 (MQ=255)                                   gTTCACCCGTGCCTAATACACCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGc                                                                                                          <  2:441213/132‑1 (MQ=255)                                   gTTCACCCGTGCCTAATACACCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGc                                                                                                          >  1:441213/1‑132 (MQ=255)                                   gTTCACCCGTGCCTAATACACCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGaa                                                                                                  >  2:1009140/1‑140 (MQ=255)                                    ttCACCCGTGCCTAATACACCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAAt                                                                                                 >  2:652407/1‑140 (MQ=255)                                    ttCACCCGTGCCTAATACACCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAAt                                                                                                 >  1:446742/1‑140 (MQ=255)                                           gTGCCTAATACACCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGt                                                                                          <  1:99065/140‑1 (MQ=255)                                           gTGCCTAATACACCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGt                                                                                          <  1:652407/140‑1 (MQ=255)                                              ccTAATACACCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGc                                                                                       >  1:131459/1‑140 (MQ=255)                                               cTAATACACCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCa                                                                                      <  2:337217/140‑1 (MQ=255)                                                tAATACACCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCAc                                                                                     <  1:502447/140‑1 (MQ=255)                                                tAATACACCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCAc                                                                                     <  1:761368/140‑1 (MQ=255)                                                      acCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCAc                                                                                     <  2:519610/134‑1 (MQ=255)                                                      acCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCAc                                                                                     >  1:519610/1‑134 (MQ=255)                                                      acCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTAc                                                                               >  1:105427/1‑140 (MQ=255)                                                      acCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTAc                                                                               <  1:347031/140‑1 (MQ=255)                                                        cGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTg                                                                             >  1:612212/1‑140 (MQ=255)                                                         gACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGa                                                                            >  2:528734/1‑140 (MQ=255)                                                          aCCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCAcc                                                                                    >  2:443014/1‑131 (MQ=255)                                                          aCCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCAcc                                                                                    <  1:443014/131‑1 (MQ=255)                                                          aCCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGAc                                                                           >  1:31355/1‑140 (MQ=255)                                                          aCCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGAc                                                                           <  2:446742/140‑1 (MQ=255)                                                            cTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCAc                                                                                     <  2:491246/128‑1 (MQ=255)                                                            cTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCAc                                                                                     >  1:491246/1‑128 (MQ=255)                                                            cTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACAt                                                                         >  1:1083212/1‑140 (MQ=255)                                                             tGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACAtt                                                                        >  1:123953/1‑140 (MQ=255)                                                             tGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACAtt                                                                        >  2:767931/1‑140 (MQ=255)                                                               tAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTa                                                                      >  1:273493/1‑140 (MQ=255)                                                                     ttGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATAc                                                                <  2:273493/140‑1 (MQ=255)                                                                         gCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCt                                                            >  2:610196/1‑140 (MQ=255)                                                                             tagtagATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCa                                                        >  2:151152/1‑140 (MQ=255)                                                                                tagATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCaaaa                                                     <  1:767931/140‑1 (MQ=255)                                                                                     gatgTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTAcc                                                <  1:151152/140‑1 (MQ=255)                                                                                     gatgTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTAcc                                                <  2:641791/140‑1 (MQ=255)                                                                                      atgTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCg                                               >  2:887702/1‑140 (MQ=255)                                                                                      atgTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCg                                               <  1:442935/140‑1 (MQ=255)                                                                                       tgTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTAc                                                          <  2:798269/128‑1 (MQ=255)                                                                                       tgTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTAc                                                          >  1:798269/1‑128 (MQ=255)                                                                                       tgTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGa                                              <  2:554433/140‑1 (MQ=255)                                                                                       tgTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGa                                              <  2:1077387/140‑1 (MQ=255)                                                                                         tCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACa                                            <  1:342974/140‑1 (MQ=255)                                                                                          cTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACAt                                           >  1:4901/1‑140 (MQ=255)                                                                                             tAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACa                                            >  1:157972/1‑136 (MQ=255)                                                                                             tAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACa                                            <  2:157972/136‑1 (MQ=255)                                                                                             tAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGa                                        <  2:612212/140‑1 (MQ=255)                                                                                              aaaTTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCAGCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGAt                                       <  1:694605/140‑1 (MQ=255)                                                                                              aaaTTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGAt                                       <  2:621550/140‑1 (MQ=255)                                                                                              aaaTTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGAt                                       <  1:594183/140‑1 (MQ=255)                                                                                                   ccAGAGACTGTCCGTTGAAATATTAACTATCCCCTCGCCGGAGGCATTTCCTCCGATAAAGCCATAGCCCGTTGAATTAAGGGTGGCGCTATAACTGGCATTTACGATACCGCTACCAAAATTACCGACATTGATGCCca                                  <  2:867485/140‑1 (MQ=255)                                                                                                     agagACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCcaca                                <  2:123953/140‑1 (MQ=255)                                                                                                     agagACTGTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCcaca                                <  1:653737/140‑1 (MQ=255)                                                                                                            gTCCGTTGAAATATTAATTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCATAATTACCGACATTGATACCCACAGTATCGa                         >  2:663839/1‑140 (MQ=255)                                                                                                            gTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGa                         >  1:643650/1‑140 (MQ=255)                                                                                                            gTCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGa                         >  2:902944/1‑140 (MQ=255)                                                                                                             tCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGaa                        >  1:567706/1‑140 (MQ=255)                                                                                                             tCCGTTGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGaa                        <  2:131459/140‑1 (MQ=255)                                                                                                                 ttGAAATATTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCAGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACgat                    <  2:1050268/140‑1 (MQ=255)                                                                                                                        atTAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCg             <  1:902944/140‑1 (MQ=255)                                                                                                                          tAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGca           <  2:22779/140‑1 (MQ=255)                                                                                                                          tAACTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGca           <  2:178298/140‑1 (MQ=255)                                                                                                                           aaCTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCACGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGcat          <  2:95418/140‑1 (MQ=255)                                                                                                                             cTATCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGcaccc        <  2:126505/140‑1 (MQ=255)                                                                                                                                tCCCCTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGcatccatc     <  2:683274/140‑1 (MQ=255)                                                                                                                                 ccccTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCATCa    >  2:545737/1‑140 (MQ=255)                                                                                                                                 ccccTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCATCa    >  1:58072/1‑140 (MQ=255)                                                                                                                                   ccTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCATCa    <  2:720574/138‑1 (MQ=255)                                                                                                                                   ccTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCATCa    >  1:720574/1‑138 (MQ=255)                                                                                                                                   ccTTGCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCATCAgg  >  2:352023/1‑140 (MQ=255)                                                                                                                                       |                                                                                                                                        CGCGCTTTAACTATACCTCCGGTGGTAATATTCAGTTCACCCGTGCCTAATACACCGACCTGTAGCAATTGTGCGTTAGTAGATGATGTCTTTAAATTCCAGAGACTGTCCGTTGAAATATTAACTATCCCCTTACCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCATCAGG  >  NC_000913/1596357‑1596626

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑