Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	288,948	C→T	G72D (GGC→GAC)	xynR ←	CP4‑6 prophage; DNA‑binding transcriptional repressor XynR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	288,948	0	C	T	100.0%	285.4 / NA	82	G72D (GGC→GAC)	xynR	CP4‑6 prophage; DNA‑binding transcriptional repressor XynR
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (39/43);  total (39/43)

ATCTTCTCGATATAGACCCCTTCACGCCCGTCCAGGATCCCCAGATGGGTGGTCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGCCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCTGCAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTCAGCCCCATCAGTTTGCTGATGTCGGT  >  NC_000913/288816‑289084                                                                                                                                     |                                                                                                                                         aTCTTCTCGATATAGACCCCTTCACGCCCGTCCAGGATCCCCAGATGGGTGGTCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTc                                                                                                                                   <  2:151689/140‑1 (MQ=255)    ttctCGATATAGACCCCTTCACGCCCGTCCAGGATCCCCAGATGGGTGGTCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGAc                                                                                                                                <  1:439050/140‑1 (MQ=255)    ttctCGATATAGACCCCTTCACGCCCGTCCAGGATCCCCAGATGGGTGGTCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGAc                                                                                                                                <  1:413742/140‑1 (MQ=255)          atatAGACCCCTTCACGCCCGTCCAGGATCCCCAGATGGGTGGTCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCtt                                                                                                                          <  2:136592/140‑1 (MQ=255)               gACCCCTTCACGCCCGTCCAGGATCCCCAGATGGGTGGTCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGc                                                                                                                     <  1:683885/140‑1 (MQ=255)                aCCCCTTCACGCCCGTCCAGGATCCCCAGATGGGTGGTCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGcc                                                                                                                    >  2:932949/1‑140 (MQ=255)                aCCCCTTCACGCCCGTCCAGGATCCCCAGATGGGTGGTCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGcc                                                                                                                    >  1:491128/1‑140 (MQ=255)                aCCCCTTCACGCCCGTCCAGGATCCCCAGATGGGTGGTCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGcc                                                                                                                    >  1:479655/1‑140 (MQ=255)                aCCCCTTCACGCCCGTCCAGGATCCCCAGATGGGTGGTCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGc                                                                                                                     <  2:1378479/139‑1 (MQ=255)                aCCCCTTCACGCCCGTCCAGGATCCCCAGATGGGTGGTCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGc                                                                                                                     >  1:1378479/1‑139 (MQ=255)                 ccccTTCACGCCCGTCCAGGATCCCCAGATGGGTGGTCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCg                                                                                                                   >  1:1006778/1‑140 (MQ=255)                   ccTTCACGCCCGTCCAGGATCCCCAGATGGGTGGTCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGcc                                                                                                                    >  1:1308527/1‑137 (MQ=255)                   ccTTCACGCCCGTCCAGGATCCCCAGATGGGTGGTCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGcc                                                                                                                    <  2:1308527/137‑1 (MQ=255)                    cTTCACGCCCGTCCAGGATCCCCAGATGGGTGGTCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAgg                                                                                                                <  2:204473/140‑1 (MQ=255)                     ttCACGCCCGTCCAGGATCCCCAGATGGGTGGTCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGAc                                                                                                                                <  2:1156233/123‑1 (MQ=255)                     ttCACGCCCGTCCAGGATCCCCAGATGGGTGGTCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGAc                                                                                                                                >  1:1156233/1‑123 (MQ=255)                     ttCACGCCCGTCCAGGATCCCCAGATGGGTGGTCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGc                                                                                                               >  1:287187/1‑140 (MQ=255)                     ttCACGCCCGTCCAGGATCCCCAGATGGGTGGTCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGc                                                                                                               >  1:940864/1‑140 (MQ=255)                     ttCACGCCCGTCCAGGATCCCCAGATGGGTGGTCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGc                                                                                                               >  1:742504/1‑140 (MQ=255)                     ttCACGCCCGTCCAGGATCCCCAGATGGGTGGTCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGc                                                                                                               <  2:479655/140‑1 (MQ=255)                       cACGCCCGTCCAGGATCCCCAGATGGGTGGTCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGa                                                                                                             >  2:614480/1‑140 (MQ=255)                       cACGCCCGTCCAGGATCCCCAGATGGGTGGTCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGa                                                                                                             >  2:166296/1‑140 (MQ=255)                               tCCAGGATCCCCAGATGGGTGGTCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGcc                                                                                                     >  1:691979/1‑140 (MQ=255)                               tCCAGGATCCCCAGATGGGTGGTCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGcc                                                                                                     >  1:1114647/1‑140 (MQ=255)                               tCCAGGATCCCCAGATGGGTGGTCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGcc                                                                                                     >  2:537711/1‑140 (MQ=255)                               tCCAGGATCCCCAGATGGGTGGTCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGcc                                                                                                     >  1:208187/1‑140 (MQ=255)                               tCCAGGATCCCCAGATGGGTGGTCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGcc                                                                                                     >  1:302507/1‑140 (MQ=255)                               tCCAGGATCCCCAGATGGGTGGTCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGcc                                                                                                     >  2:7837/1‑140 (MQ=255)                                ccAGGATCCCCAGATGGGTGGTCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCg                                                                                                    <  2:673331/140‑1 (MQ=255)                                      tCCCCAGATGGGTGGTCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTcc                                                                                              <  1:614480/140‑1 (MQ=255)                                        cccAGATGGGTGGTCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGAt                                                                                                            <  2:585493/124‑1 (MQ=255)                                        cccAGATGGGTGGTCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGAt                                                                                                            >  1:585493/1‑124 (MQ=255)                                         ccAGATGGGTGGTCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCggg                                                                                           <  1:625712/140‑1 (MQ=255)                                             aTGGGTGGTCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCt                                                                                       >  2:261501/1‑140 (MQ=255)                                                ggtggtCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGAt                                                                                    <  1:107433/140‑1 (MQ=255)                                                ggtggtCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGAt                                                                                    <  1:166296/140‑1 (MQ=255)                                                ggtggtCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGAt                                                                                    <  2:302507/140‑1 (MQ=255)                                                ggtggtCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGAt                                                                                    >  1:1262042/1‑140 (MQ=255)                                                ggtggtCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGAt                                                                                    <  1:932949/140‑1 (MQ=255)                                                ggtggtCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGAt                                                                                    <  1:537711/140‑1 (MQ=255)                                                 gtggtCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCTGGTTCTGATc                                                                                   <  1:124439/140‑1 (MQ=255)                                                 gtggtCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATc                                                                                   >  1:1138853/1‑140 (MQ=255)                                                  tggtCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCg                                                                                  >  1:76256/1‑140 (MQ=255)                                                  tggtCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCg                                                                                  >  2:1207171/1‑140 (MQ=255)                                                  tggtCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAACCCACGACACAATGGTGGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCg                                                                                  >  2:1025788/1‑140 (MQ=255)                                                      cTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGatat                                                                              <  1:173112/140‑1 (MQ=255)                                                       tGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGAtata                                                                             >  1:705328/1‑140 (MQ=255)                                                              tCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGa                                                                      >  2:594579/1‑140 (MQ=255)                                                              tCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGa                                                                      >  1:758802/1‑140 (MQ=255)                                                                  ccgGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCt                                                                  >  2:478632/1‑140 (MQ=255)                                                                     ggACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCTGCa                                                               <  2:116508/140‑1 (MQ=255)                                                                          gCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCTGCAGGGtt                                                          >  1:277933/1‑140 (MQ=255)                                                                                  agccagccTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCTGCAGGGTTTTTagcag                                                  <  2:497898/140‑1 (MQ=255)                                                                                   gccagccTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCTGCAGGGTTTTTagcagc                                                 <  2:1006778/140‑1 (MQ=255)                                                                                   gccagccTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCTGCAGGGTTTTTagcagc                                                 <  2:1059536/140‑1 (MQ=255)                                                                                   gccagccTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCTGCAGGGTTTTTagcagc                                                 <  2:1138853/140‑1 (MQ=255)                                                                                    ccagccTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCTGCAGGGTTTTTAGCAGCg                                                >  2:624677/1‑140 (MQ=255)                                                                                      agccTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCTGCAGGGTTTTTAGCAGCGAg                                              <  2:76256/140‑1 (MQ=255)                                                                                       gccTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCTGCAGGGTTTTTAGCAGCGAGt                                             <  1:1207171/140‑1 (MQ=255)                                                                                        ccTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCTGCAGGGTTTTTagc                                                    <  2:740416/132‑1 (MQ=255)                                                                                        ccTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCTGCAGGGTTTTTagc                                                    >  1:740416/1‑132 (MQ=255)                                                                                        ccTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCTGCAGGGTTTTTAGCAGCGAGTg                                            <  2:491128/140‑1 (MQ=255)                                                                                        ccTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCTGCAGGGTTTTTAGCAGCGAGTg                                            <  2:304391/140‑1 (MQ=255)                                                                                          ttttGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCTGCAGGGTTTTTAGCAGCGAGTGGa                                          <  2:208187/140‑1 (MQ=255)                                                                                             tGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCTGCAGGGTTTTTAGCAGCGAGTGGAggg                                       <  2:277933/140‑1 (MQ=255)                                                                                             tGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGAGCGATATAGCCGTGAAGCTGCAGGGTTTTTAGCAGCGAGTGGAggg                                       <  2:287187/140‑1 (MQ=255)                                                                                                        gAATATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCTGCAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTc                            <  2:1421509/140‑1 (MQ=255)                                                                                                         aaTATCGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCTGCAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTCa                           >  1:555149/1‑140 (MQ=255)                                                                                                              cGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCTGCAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTCAg                          >  1:772702/1‑136 (MQ=255)                                                                                                              cGATGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCTGCAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTCAg                          <  2:772702/136‑1 (MQ=255)                                                                                                                aTGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCTGCAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTCAGCCCCAt                    >  1:440298/1‑140 (MQ=255)                                                                                                                aTGGAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCTGCAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTCAGCCCCAt                    <  1:261501/140‑1 (MQ=255)                                                                                                                   gAGCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCTGCAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTCAGCCCCATCAg                 >  2:1191991/1‑140 (MQ=255)                                                                                                                     gCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCTGCAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTCAGCCCCATCAGtt               >  1:1097463/1‑140 (MQ=255)                                                                                                                     gCCCACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCTGCAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTCAGCCCCATCAGtt               >  1:641483/1‑140 (MQ=255)                                                                                                                        cACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCTGCAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTCAGCCCCATCAGt                <  2:156090/136‑1 (MQ=255)                                                                                                                        cACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCTGCAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTCAGCCCCATCAGt                >  1:156090/1‑136 (MQ=255)                                                                                                                        cACGACAAAATGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCTGCAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTCAGCCCCATCAGTTTGc            >  1:1005063/1‑140 (MQ=255)                                                                                                                              aaaaTGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCTGCAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTCAGCCCCATCAGTTTGCTGATGt      <  2:1005063/140‑1 (MQ=255)                                                                                                                                 aTGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCTGCAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTCAGCCCCATCAGTTTGCTGATGTCgg   <  2:202733/140‑1 (MQ=255)                                                                                                                                 aTGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCTGCAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTCAGCCCCATCAGTTTGCTGATGTCgg   <  1:967323/140‑1 (MQ=255)                                                                                                                                 aTGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCTGCAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTCAGCCCCATCAGTTTGCTGATGTCgg   <  1:738384/140‑1 (MQ=255)                                                                                                                                 aTGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCTGCAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTCAGCCCCATCAGTTTGCTGATGTCgg   <  1:478632/140‑1 (MQ=255)                                                                                                                                 aTGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCTGCAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTCAGCCCCATCAGTTTGCTGATGTCgg   <  1:1266784/140‑1 (MQ=255)                                                                                                                                  tGGTCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCTGCAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTCAGCCCCATCAGTTTGCTGATGTCGGt  <  2:691979/140‑1 (MQ=255)                                                                                                                                     |                                                                                                                                         ATCTTCTCGATATAGACCCCTTCACGCCCGTCCAGGATCCCCAGATGGGTGGTCTGCCCGGTCCGCCGGGACAGCTCCGTCAGCCAGCCTTTTGCCTTCTGCCGAATATCGATGGAGCCCACGACAAAATGGCCGCGCTCGACCAGCTTCATGCCGAGGCGATACTTGCCGTTCTCCGGGTTCTGATCGATATAGCCGTGAAGCTGCAGGGTTTTTAGCAGCGAGTGGAGGGTACTCTTGCTCAGCCCCATCAGTTTGCTGATGTCGGT  >  NC_000913/288816‑289084

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑