| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,371,433 | (G)5→4 | coding (526/1653 nt) | arnT → | lipid IVA 4‑amino‑4‑deoxy‑L‑arabinosyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,371,429 | 0 | G | . | 88.0% | 76.3 / 7.4 | 25 | coding (522/1653 nt) | arnT | lipid IVA 4‑amino‑4‑deoxy‑L‑arabinosyltransferase |
| Reads supporting (aligned to +/- strand): ref base G (2/1); new base . (14/8); total (16/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 | |||||||||||
CCGTGCTCGATCCGTTTATTGCATTCTGGCTGGTGGCGGGAATGTGCAGCTTCTGGCTGGCAATGCAGGCACAGACGTGGAAAGGCAAAAGCGCAGGATTTTTACTGCTGGGAATCACCTGCGGCAT‑GGGGGTGATGACCAAAGGTTTTCTCGCCCTTGCCGTGCCGGTATTAAGCGTGCTGCCATGGGTAGCGACGCAAAAACGCTGGAAAGATCTCTTTATTTACGGCTGGCTGGCGGTTATCAGTTGCGTACT > NC_000913/2371302‑2371557 | ccGTGCTCGATCCGTTTATTGCATTCTGGCTGGTGGCGGGAATGTGCAGCTTCTGGCTGGCAATGCAGGCACAGACGTGGAAAGGCAAAAGCGCAGGATTTTTACTGCTGGGAATCACCTGCGGCAT‑ggggtg < 1:9367/133‑3 (MQ=255)ccGTGCTCGATCCGTTTATTGCATTCTGGCTGGTGGCGGGAATGTGCAGCTTCTGGCTGGCAATGCAGGCACAGACGTGGAAAGGCAAAAGCGCAGGATTTTTACTGCTGGGAATCACCTGCGGCAT‑ggggtg < 2:553333/133‑3 (MQ=255)ccGTGCTCGATCCGTTTATTGCATTCTGGCTGGTGGCGGGAATGTGCAGCTTCTGGCTGGCAATGCAGGCACAGACGTGGAAAGGCAAAAGCGCAGGATTTTTACTGCTGGGAATCACCTGCGGCAT‑ggggtg > 1:48897/1‑131 (MQ=255) cGATCCGTTTATTGCATTCTGGCTGGTGGCGGGAATGTGCAGCTTCTGGCTGGCAATGCAGGCACAGACGTGGAAAGGCAAAAGCGCAGGATTTTTACTGCTGGGAATCACCTGCGGCAT‑‑GGGGTGATGACCa < 2:526050/133‑1 (MQ=255) tttATTGCATTCTGGCTGGTGGCGGGAATGTGCAGCTTCTGGCTGGCAATGCAGGCACAGACGTGGAAAGGCAAAAGCGCAGGATTTTTACTGCTGGGAATCACCTGCGGCAT‑‑GGGGTGATGACCAAAGGttt > 1:393090/1‑133 (MQ=255) tGCATTCTGGCTGGTGGCGGGAATGTGCATGTTCTGGGTGGCAATGCAGGGACAGACGAGGAAAGGCAAAAGCGCAGGATTTTTACTGCTGGGAATCACCTGCGGCCT‑GGGGG‑GATGACCAAAGGctttattg > 2:390561/1‑129 (MQ=255) tGCATTCTGGCTGGAGGCGGGAATGTGGAGCTTCTGGCTGGCAATGCAGGCACAGACGTGGAAAAGCGAAAACGCAAGATTTTTACTGCTGGGAATCACCTGCGGCAT‑‑GGGGTGATGACCAAAGGATTTCTCg > 2:622630/1‑133 (MQ=255) gCATTCTGGCTGGTGGCGGGAATGTGCAGCTTCTGGCTGGCAATGCAGGCACAGACGTGGAAAGGCAAAAGCGCAGGATTTTTACTGCTGGGAATCACCTGCGGCAT‑‑GGGGTGATGACCAAAGGTTTTCTCGc > 1:586611/1‑133 (MQ=255) tggtggCGGGAATGTGCAGCTTCTGGCTGGCAATGCAGGCACAGACGTGGAAAGGCAAAAGCGCAGGATTTTTACTGCTGGGAATCACCTGCGGCAT‑‑GGGGTGATGACCAAAGGTTTTCTCGCCCTtgccgtg < 2:586611/133‑1 (MQ=255) ggtggCGGGAATGTGCAGCTTCTGGCTGGCAATGCAGGCACAGACGTGGAAAGGCAAAAGCGCAGGATTTTTACTGCTGGGAATCACCTGCGGCAT‑GGGGG‑GATAACCCAAGGTTTTCTCGCACTtgccgtgc > 2:241029/1‑133 (MQ=255) gtggCGGGAATGTGCAGCTTCTGGCTGGCAATGCAGGCACAGACGTGGAAAGGCAAAAGCGCAGGATTTTTACTGCTGGGAATCACCTGCGGCAT‑‑GGGGTGATGACCAAAGGTTTTCTCGCCCTtgccgtgcc < 2:414054/133‑1 (MQ=255) ctggctggCAATGCAGGCACAGACGTGGAAAGGCAAAAGCGCAGGATTTTTACTGCTGGGAATCACCTGCGGCATGGGGGGTGATGACCAAAGGTTTTCTCGCCCTTGCCGTGCCGGTATTAAGCGTGCTGcc > 1:507118/1‑133 (MQ=255) ctggctggCAATGCAGGCACAGACGTGGAAAGGCAAAAGCGCAGGATTTTTACTGCTGGGAATCACCTGCGGCAT‑‑GGGGTGATGACCAAAGGTTTTCTCGCCCTTGCCGTGCCGGTATTAAGCGTGCTGCCAt > 2:391096/1‑133 (MQ=255) caGACGTGGAAAGGCAAAAGCGCAGGATTTTTACTGCTGGGAATCACCTGCGGCAT‑‑GGGGTGATGACCAAAGGTTTTCTCGCCCTTGCCGTGCCGGTATTAAGCGTGCTGCCATGGGTAGCGACGCAAAAACg < 2:42774/133‑1 (MQ=255) aGACGTGGAAAGGCAAAAGCGCAGGATTTTTACTGCTGGGAATCACCTGCGGCATGGGGGGTGATGACCAAAGGTTTTCTCGCCCTTGCCGTGCCGGTATTAAGCGTGCTGCCATGGGTAGCGACGCAAAAAc < 2:507118/133‑1 (MQ=255) gACGTGGAAAGGCAAAAGCGCAGGATTTTTACTGCTGGGAATCACCTGCGGCAT‑‑GGGGTGATGACCAAAGGTTTTCTCGCCCTTGCCGTGCCGGTATTAAGCGTGCTGCCATGGGTAGCGACGCAAAAACGCt > 1:508519/1‑133 (MQ=255) ggAAAGGCAAAAGCGCAGGATTTTTACTGCTGGGAATCACCTGCGGCAT‑‑GGGGTGATGACCAAAGGTTTTCTCGCCCTTGCCGTGCCGGTATTAAGCGTGCTGCCATGGGTAGCGACGCAAAAACGCTGGaaa > 1:83175/1‑133 (MQ=255) ggAAAGGCAAAAGCGCAGGATTTTTACTGCTGGGAATCACCTGCGGCAT‑‑GGGGTGATGACCAAAGGTTTTCTCGCCCTTGCCGTGCCGGTATTAAGCGTGCTGCCATGGGTAGCGACGCAAAAACGCTGGaaa > 2:50250/1‑133 (MQ=255) tttACTGCTGGGAATCACCTGCGGCAT‑‑GGGGTGATGACCAAAGGTTTTCTCGCCCTTGCCGTGCCGGTATTAAGCGTGCTGCCATGGGTAGCGACGCAAAAACGCTGGAAAGATCTCTTTATTTACggctggc < 2:451383/133‑1 (MQ=255) tACTGCTGGGAATCACCTGCGGCAT‑‑GGGGTGATGACCAAAGGTTTTCTCGCCCTTGCCGTGCCGGTATTAAGCGTGCTGCCATGGGTAGCGACGCAAAAACGCTGGAAAGATCTCTTTATTTACGgctggctg < 1:390561/133‑1 (MQ=255) gctgGGAATCACCTGCGGCAT‑‑GGGGTGATGACCAAAGGTTTTCTCGCCCTTGCCGTGCCGGTATTAAGCGTGCTGCCATGGGTAGCGACGCGAAAACGCTGGAAGGATGTCTTTATTGACGGGTGGCTGGCgg > 2:167454/1‑133 (MQ=255) gctgGGAATCACCTGCGGCAT‑‑GGGGTGATGACCAAAGGTTTTCTCGCCCTTGCCGTGCCGGTATTAAGCGTGCTGCCATGGGTAGCGACGCAAAAACGCTGGAAAGATCTCTTTATTTACGGCTGGCTGGCgg < 1:391096/133‑1 (MQ=255) gctgGGAATCACCTGCGGCAT‑‑GGGGTGATGACCAAAGGTTTTCTCGCCCTTGCCGTGCCGGTATTAAGCGTGCTGCCATGGGTAGCGACGCAAAAACGCTGGAAAGATCTCTTTATTTACGGCTGGCTGGCgg > 1:510637/1‑133 (MQ=255) gctgGGAATCACCTGCGGCAT‑‑GGGGTGATGACCAAAGGTTTTCTCGCCCTTGCCGTGCCGGTATTAAGCGTGCTGCCATGGGTAGCGACGCAAAAACGCTGGAAAGATCTCTTTATTTACGGCTGGCTGGCgg > 1:108160/1‑133 (MQ=255) gctgGGAATCACCTGCGGCAT‑‑GGGGTGATGACCAAAGGTTTCCTCGCCCTTGCCGTGCCGGTATTAAGCGTGCTGCCATGGGTAGCGACGCAAAAACGCTGGAAAGATCTCTTTATTTACGGCTGGCTGGCgg > 1:587812/1‑133 (MQ=255) ccTGCGGCAT‑‑GGGGTGATGACCAAAGGTTTTCTCGCCCTTGCCGTGCCGGTATTAAGCGTGCTGCCATGGGTAGCGACGCAAAAACGCTGGAAAGATCTCTTTATTTACGGCTGGCTGGCGGTTATCAGTTGc > 2:68811/1‑133 (MQ=255) tGCGGCAT‑‑GGGGTGATGACCAAAGGTTTTCTCGCCCTTGCCGTGCCGGTATTAAGCGTGCTGCCATGGGTAGCGACGCAAAAACGCTGGAAAGATCTCTTTATTTACGGCTGGCTGGCGGTTATCAGTTGCGt < 2:557000/133‑1 (MQ=255) gCGGCAT‑‑GGGGTGATGACCAAAGGTTTTCTCGCCCTTGCCGTGTCGGTATTAAGCGTGCTGCCATGGGTAGCGACGCAAAAACGCTGGAAAGATCTCTTTATTTACGGCTGGCTGGCGGTTATCAGTTGCGTa > 1:452198/1‑133 (MQ=255) cGGCAT‑‑GGGGTGATGACCAAAGGTTTTCTCGCCCTTGCCGTGCCGGTATTAAGCGTGCTGCCATGGGTAGCGACGCAAAAACGCTGGAAAGATCTCTTTATTTACGGCTGGCTGGCGGTTATCAGTTGCGTAc > 2:482346/1‑133 (MQ=255) ggCAT‑‑GGGGTGATGACCAAAGGTTTTCTCGCCCTTGCCGTGCCGGTATTAAGCGTGCTGCCATGGGTAGCGACGCAAAAACGCTGGAAAGATCTCTTTATTTACGGCTGGCTGGTGGGTATCAGTTGCGTACt > 1:209832/1‑133 (MQ=255) | CCGTGCTCGATCCGTTTATTGCATTCTGGCTGGTGGCGGGAATGTGCAGCTTCTGGCTGGCAATGCAGGCACAGACGTGGAAAGGCAAAAGCGCAGGATTTTTACTGCTGGGAATCACCTGCGGCAT‑GGGGGTGATGACCAAAGGTTTTCTCGCCCTTGCCGTGCCGGTATTAAGCGTGCTGCCATGGGTAGCGACGCAAAAACGCTGGAAAGATCTCTTTATTTACGGCTGGCTGGCGGTTATCAGTTGCGTACT > NC_000913/2371302‑2371557 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |