| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,389,175 | Δ1 bp | coding (60/849 nt) | yfbP → | uncharacterized protein YfbP |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,389,172 | 0 | G | . | 97.9% | 194.2 / ‑3.0 | 48 | coding (57/849 nt) | yfbP | uncharacterized protein YfbP |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base . (23/24); total (24/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGGTGGGATTAAAACATTTATATAAACAGATAAGCGGATGTTTACATAAATTTTTATGTGAAGGAACATGATGAAACTTATTCCTCGCAGTAGTGATATTTCACCTGGCATTGATGGAATTTGCCCGGGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATGCAGCATATGGTAACGGAGACTGTTTCGGTTTGTACTGGCCTATTGGTCAGGAGCATAAACTACCTATAGTGTGCGAAACG > NC_000913/2389046‑2389292 | tggtggGATTAAAACATTTATATAAACAGATAAGCGGATGTTTACATAAATTTTTATGTGAAGGAACATGATGAAACTTATTCCTCGCAGTAGTGATATTTCACCTGGCATTGATGGAATTTGCCCgggcctt > 2:458411/1‑129 (MQ=255) ggtggGATTAAAACATTTATATAAACAGATAAGCGGATGTTTACATAAATTTTTATGTGAAGGAACATGATGAAACTTATTCCTCGCAGTAGTGATATTTCACCTGGCATTGATGGAATTTGCCC‑GGGCCttt > 2:549961/1‑133 (MQ=255) ttAAAACATTTATATAAACAGATAAGCGGATGTTTACATAAATTTTTATGTGAAGGAACATGATGAAACTTATTCCTCGCAGTAGTGATATTTCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCg < 1:577204/133‑1 (MQ=255) ttAAAACATTTATATAAACAGATAAGCGGATGTTTACATAAATTTTTATGTGAAGGAACATGATGAAACTTATTCCTCGCAGTAGTGATATTTCACCTGGCAGTGATGGACTTT‑ACCTGGGCCTGTTCCTCCg > 1:285712/1‑133 (MQ=255) tAAAACATTTATATAAACAGATAAGCGGATGTTTACATAAATTTTTATGTGAAGGAACATGATGAAACTTATTCCTCGCAGTAGTGATATTCCACCTGGCATTGATTGAATTTGCCC‑GGGCCGATTCCTCCGa > 2:285135/1‑133 (MQ=255) ttATATAAACAGATAAGCGGATGTTTACATAAATTTTTATGTGAAGGAACATGATGAAACTTATTCCTCGCAGTAGTGATATTTCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGAttt > 1:95363/1‑133 (MQ=255) atataAACAGATAAGCGGATGTTTACATAAATTTTTATGTGAAGGAACATGATGAAACTTATTCCTCGCAGTAGTGATATTTCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTAc < 1:452940/133‑1 (MQ=255) aCAGATAAGCGGATGTTTACATAAATTTTTATGTGAAGGAACATGATGAAACTTATTCCTCGCAGTAGTGATATTTCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACt > 2:151601/1‑133 (MQ=255) aTAAGCGGATGTTTACATAAATTTTTATGTGAAGGAACATGATGAAACTTATTCCTCGCAGTAGTGATATTTCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACa > 2:590578/1‑133 (MQ=255) aTAAGCGGATGTTTACATAAATTTTTATGTGAAGGAACATGATGAAACTTATTCCTCGCAGTAGTGATATTTCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACa > 1:138790/1‑133 (MQ=255) aTAAGCGGATGTTTACATAAATTTTTATGTGAAGGAACATGATGAAACTTATTCCTCGCAGTAGTGATATTTCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACa > 1:621756/1‑133 (MQ=255) aTAAGCGGATGTTTACATAAATTTTTATGTGAAGGAACATGATGAAACTTATTCCTCGCAGTAGTGATATTTCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACa < 2:42370/133‑1 (MQ=255) tAAGCGGATGTTTACATAAATTTTTATGTGAAGGAACATGATGAAACTTATTCCTCGCAGTAGTGATATTTCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAg > 2:345733/1‑133 (MQ=255) tAAGCGGATGTTTACATAAATTTTTATGTGAAGGAACATGATGAAACTTATTCCTCGCAGTAGTGATATTTCACCTGGCATTGATGGAATTGGCCC‑GGGCATTTACCTCCGAACGGAGTTACTGTACTTACAg > 2:204637/1‑133 (MQ=255) gCGGATGTTTACATAAATTTTTATGTGAAGGAACATGATGAAACTTATTCCTCGCAGTAGTGATATTTCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATg < 2:100385/133‑1 (MQ=255) gCGGATGTTTACATAAATTTTTATGTGAAGGAACATGATGAAACTTATTCCTCGCAGTAGTGATATTTCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATg < 2:539044/133‑1 (MQ=255) cGGATGTTTACATAAATTTTTATGTGAAGGAACATGATGAAACTTATTCCTCGCAGTAGTGATATTTCACCTGGCATTGATGGAATTTG‑CCGGGGCCTTTTCCTACAAAGGGATTTAACGTACGTACAGAtac > 2:301133/1‑131 (MQ=255) aTGTTTACATAAATTTTTATGTGAAGGAACATGATGAAACTTATTCCTCGCAGTAGTGATATTTCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATgcagc > 2:44244/1‑133 (MQ=255) tGTTTACATAGATTTGTATGTGACTGAACATGTTGAAACTTCTTCCTCGCAGTAGTGATATTTCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATgcagca < 2:285712/133‑1 (MQ=255) tGTTTACATAAATTTTTATGTGAAGGAACATGATGAAACTTATTCCTCGCAGTAGTGATATTTCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATgcagca < 1:151601/133‑1 (MQ=255) gTTTACATAAATTTTTATGTGAAGGAACATGATGAAACTTATTCCTCGCAGTAGTGATATTTCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATGCAGCat > 1:121137/1‑133 (MQ=255) tACATAAATTTTTATGTGAAGGAACATGATGAAACTTATTCCTCGCAGTAGTGATATTTCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATGCAGCATATg > 2:345264/1‑133 (MQ=255) tACATAAATTTTTATGTGAAGGAACATGATGAAACTTATTCCTCGCAGTAGTGATATTTCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATGCAGCATATg > 2:36431/1‑133 (MQ=255) aTGTGAAGGAACATGATGAAACTTATTCCTCGCAGTAGTGATATTTCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATGCAGCATATGGTAATGGAGACTg > 1:262840/1‑133 (MQ=255) gtgAAGGAACATGATGAAACTTATTCCTCGCAGTAGTGATATTTCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATGCAGCATATGGTAACGGAGACTGtt < 1:495499/133‑1 (MQ=255) ggAACATGATGAAACTTATTCCTCGCAGTAGTGATATTTCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATGCAGCATATGGTAACGGAGACTGTTTCGGt < 2:95363/133‑1 (MQ=255) ggAACATGATGAAACTTATTCCTCGCAGTAGTGATATTTCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATGCAGCATATGGTAACGGAGACTGTTTCGGt < 1:345733/133‑1 (MQ=255) ggAACATGATGAAACTTATTCCTCGCAGTAGTGATATTTCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATGCAGCATATGGTAACGGAGACTGTTTCGGt < 1:36431/133‑1 (MQ=255) ggAACATGATGAAACATACTCCACGCAGTAGTGATATTTCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATGCAGCATATGGTAACGGAGACTGTTTCGGt < 1:301133/133‑1 (MQ=255) atgatgAAACTTATTCCTCGCAGTAGTGATATTTCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATGCAGCATATGGTAACGGAGACTGTTTCGGTTTGTa < 1:590578/133‑1 (MQ=255) atgatgAAACTTATTCCTCGCAGTAGTGATATTTCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATGCAGCATATGGTAACGGAGACTGTTTCGGTTTGTa < 1:549961/133‑1 (MQ=255) atgaAACTTATTCCTCGCAGTAGTGATATTTCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATGCAGCATATGGTAACGGAGACTGTTTCGGTTTGTACTg < 1:488785/133‑1 (MQ=255) atgaAACTTATTCCTCGCAGTAGTGATATTTCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATGCAGCATATGGTAACGGAGACTGTTTCGGTTTGTACTg > 1:443673/1‑133 (MQ=255) cTTATTCCTCGCAGTAGTGATATTTCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATGCAGCATATGGTAACGGAGACTGTTTCGGTTTGTACTGGCCTAt < 1:113780/133‑1 (MQ=255) cGCAGTAGTGATATTTCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATGCAGCATATGGTAACGGAGACTGTTTCGGTTTGTACTGGCCTATTGGTCAGGa > 2:376572/1‑133 (MQ=255) gCAGTAGTGATATTTCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATGCAGCATATGGTAACGGAGACTGTTTCGGTTTGTACTGGCCTATTGGTCAGGAg > 1:581833/1‑133 (MQ=255) gtggtGATATTTCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATGCAGCATATGGTAACGGAGACTGTTTCGGTTTGTACTGGCCTATTGGTCAGGAGCAt < 2:581833/130‑1 (MQ=255) agtGATATTTCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATGCAGCATATGGTAACGGAGACTGTTTCGGTTTGTACTGGCCTATTGGTCAGGAGCATaa < 2:443673/133‑1 (MQ=255) agtGATATTTCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATGCAGCATATGGTAACGGAGACTGTTTCGGTTTGTACTGGCCTATTGGTCAGGAGCATaa < 1:1741/133‑1 (MQ=255) agtGATATTTCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATGCAGCATATGGTAACGGAGACTGTTTCGGTTTGTACTGGCCTATTGGTCAGGAGCATaa < 1:126102/133‑1 (MQ=255) agtGATATCTCACCTGGCATTGTTGGAATTGGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATGCAGCATATGGTAACGGAGACTGTTTCGGTTTGTACTGGCCTATTGGTCAGGAGCATaa < 1:285135/133‑1 (MQ=255) gtGATATTTCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATGCAGCATATGGTAACGGAGACTGTTTCGGTTTGTACTGGCCTATTGGTCAGGAGCATaaa < 1:44244/133‑1 (MQ=255) tttCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATGCAGCATATGGTAACGGAGACTGTTTCGGTTTGTACTGGCCTATTGGTCAGGAGCATAAACTACCt > 1:570581/1‑133 (MQ=255) ttCACCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATGCAGCATATGGTAACGGAGACTGTTTCGGTTTGTACTGGCCTATTGGTCAGGAGCATAAACTACCta < 1:376572/133‑1 (MQ=255) aCCTGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATGCAGCATATGGTAACGGAGACTGTTTCGGTTTGTACTGGGCTATTGGGCAGAAGGATAAACAACCTATAg > 1:183223/1‑133 (MQ=255) tGGCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATGCAGCATATGGTAACGGAGACTGTTTCGGTTTGTACTGGCCTATTGGTCAGGAGCATAAACTACCTATAgtgt > 1:325719/1‑133 (MQ=255) ggCATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATGCAGCATATGGTAACGGAGACTGTTTCGGTTTGTACTGGCCTATTGGTCAGGAGCATAAACTACCTATAGtgtg > 1:337402/1‑133 (MQ=255) cATTGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATGCAGCATATGGTAACGGAGACTGTTTCGGTTTGTACTGGCCTATTGGTCAGGAGCATAAACTACCTATAGTGTGCg < 1:458411/133‑1 (MQ=255) tGATGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATGCAGCATATGGTAACGGAGACTGTTTCGGTTTGTACTGGCCTATTGGTCAGGAGCATAAACTACCTATAGTGTGCGaaa < 1:345264/133‑1 (MQ=255) aTGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATGCAGCATATGGTAACGGAGACTGTTTCGGTTTGTACTGGCCTATTGGTCAGGAGCATAAACTACCTATAGTGTGCGAAACg > 2:11178/1‑133 (MQ=255) aTGGAATTTGCCC‑GGGCCTTTTCCTCCGAACGCATTTACCGTACTTACAGATGCAGCATATGGTAACGGAGACTGTTTCGGTTTGTACTGGCCTATTGGTCAAGAGCATAAACTGCCGATAGTGAGCGAAACg > 1:287901/1‑133 (MQ=255) | TGGTGGGATTAAAACATTTATATAAACAGATAAGCGGATGTTTACATAAATTTTTATGTGAAGGAACATGATGAAACTTATTCCTCGCAGTAGTGATATTTCACCTGGCATTGATGGAATTTGCCCGGGGCCTTTTCCTCCGAACGGATTTACCGTACTTACAGATGCAGCATATGGTAACGGAGACTGTTTCGGTTTGTACTGGCCTATTGGTCAGGAGCATAAACTACCTATAGTGTGCGAAACG > NC_000913/2389046‑2389292 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |