| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,831,712 | C→T | G193D (GGC→GAC) | norR ← | DNA‑binding transcriptional dual regulator NorR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,831,712 | 0 | C | T | 93.8% | 47.2 / ‑6.2 | 16 | G193D (GGC→GAC) | norR | DNA‑binding transcriptional dual regulator NorR |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (3/12); minor base G (1/0); total (4/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.50e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCCGTGGCGAGGCTTCATGAATCGCTTTCGCCACCAGCTCCTTACCGGTTCCAGTCTCACCGCTGATCAGGACGTTGAGATCGGACGCCGCCACAATCTCAATCTCTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGC > NC_000913/2831587‑2831837 | cccGTGGCGAGGCTTCATGAATCGCTTTCGCCACCAGCTCCTTACCGGTTCCAGTCTCACCGCTAATCAGGACGTTGAGATCGGACGCCGCCACAATCTCAATCTCTTTTTTCAGTTGCGTCATGTCAGGGGa < 1:148649/133‑1 (MQ=255)cccGTGGCGAGGCTTCATCAATCGCTTTCGCCACCAGCTCCTTACCGGTTCCAGTCTCACCGCTGATCAGGACGTTGAGATCGGACGCCGCCACAATCTCAATCTCTTTTTTCAGTTGCGTCATGTCAGGGGa < 1:224783/133‑1 (MQ=255) gTGGCGAGGCTTCATGAATCGCTTTCGCCACC‑GCTCCTTACCGGTTCCAGTCTCACCGCTGATCAGGACGTTGAGATCGGACGCCGCCACAATCTCAATCTCTTTTTTCAGTTGCGTCATGTCAGGGGACAAg < 1:137148/133‑1 (MQ=255) gAGGCTTCATGAATCGCTTTCGCCACCAGCTCCTTACCGGTTCCAGTCTCACCGCTGATCAGGACGTTGAGATCGGACGCCGCCACAATCTCAATCTCTTTTTTCAGTTGCGTCATGTCAGGGGACAAGCCaa < 1:491273/133‑1 (MQ=255) acagtCATGAATCGCTTTCGCCACCAGCTCCTTACCGGTTCCAGTCTCACCGCTGATCAGGACGTTGAGATCGGCCGCCGCCACAATCTCAATCTCTTTTTTCAGTTGCGTCATGTCAGGGGACAAGCCAatc < 2:146539/129‑1 (MQ=255) gCTTCATGAATCGCTTTCGCCACCAGCTCCTTACCGGTTCCAGTCTCACCGCTGATCAGGACGTTGAGATCGGACGCCGCCACAATCTCAATCTCTTTTTTCTGTTGCGTAATGGCAGGGGACAGGCCAatca > 1:180633/1‑133 (MQ=255) aTGAATCGCTTTCGCCACCAGCTCCTTACCGGTTCCAGTCTCACCGCTGATCAGGACGTTGAGATCGGACGCCGCCACAATCTCAATCTCTTTTTTCAGTTGCGTCATGTCAGGGGACAAGCCAATCATCTGc < 1:461843/133‑1 (MQ=255) cTTTCGCCACCAGCTCCTTACCGGTTCCAGTCTCACCGCTGATCAGGACGTTGAGATCGGACGCCGCCACAATCTCAATCTCTTTTTTCAGTTGCGTCATGTCAGGGGACAAGCCAATCATCTGCGTCTGttt > 2:139865/1‑133 (MQ=255) aTCAGGACGTTGAGATCGGACGCCGCCACAATCTCAATCTCTTTTTTCAGTTGCGTCATGTCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCt < 2:550072/133‑1 (MQ=255) gACGTTGAGATCGGACGCCGCCACAATCTCAATCTCTTTTTTCAGTTGCGTCATGTCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCACTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCtt < 1:331216/133‑1 (MQ=255) tGAGATCGGACGCCGCCACAATCTCAATCTCTTTTTTCAGTTGCGTCATGTCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGTATCGCCTAGCAACATATTCTGCCTTTCCAg > 1:197027/1‑133 (MQ=255) gagaTCGGACGCCGCCACAATCTCAATCTCTTTTTTCAGTTGCGTCATGTCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAgt < 2:327435/133‑1 (MQ=255) ccgccACAATCTCAATCTCTTTTTTCAGTTGCGTCATGTCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAg < 2:496400/133‑1 (MQ=255) aatctcaatctcTTTTTTCAGTTGCGTCATGTCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCa < 2:31649/133‑1 (MQ=255) aatctcaatctcTTTTTTCAGTTGCGTCATGTCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCa < 2:396667/133‑1 (MQ=255) cGTCATGTCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAgc > 1:609864/1‑133 (MQ=255) | CCCGTGGCGAGGCTTCATGAATCGCTTTCGCCACCAGCTCCTTACCGGTTCCAGTCTCACCGCTGATCAGGACGTTGAGATCGGACGCCGCCACAATCTCAATCTCTTTTTTCAGTTGCGTCATGCCAGGGGACAAGCCAATCATCTGCGTCTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGC > NC_000913/2831587‑2831837 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |