| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,884,194 | A→C | intergenic (+88/‑142) | ysdD → / → rpmH | protein YsdD/50S ribosomal subunit protein L34 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,884,194 | 0 | A | C | 98.0% | 170.6 / NA | 50 | intergenic (+88/‑142) | ysdD/rpmH | protein YsdD/50S ribosomal subunit protein L34 |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base C (22/27); minor base T (1/0); total (23/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.60e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATAAGGAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCAT > NC_000913/3884066‑3884304 | aTCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGaa < 1:575794/133‑1 (MQ=255)aTCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGaa > 1:112912/1‑133 (MQ=255) aGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAagag > 2:405766/1‑133 (MQ=255) ggACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAATGTGCGGAGAAGCGCGGAAAATCCGGAAAgaga > 2:239533/1‑133 (MQ=255) gACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGATGCAGAATAGCGCGGTAAATACGGAAAGAGaa > 2:217756/1‑133 (MQ=255) aTCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGa > 2:67149/1‑133 (MQ=255) tCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGACAAGCGCGGTAAGTATGGAAAGGGAATTGAc > 1:172622/1‑133 (MQ=255) tCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGAc > 2:142739/1‑133 (MQ=255) tGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCg < 1:535032/133‑1 (MQ=255) tGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCg < 1:313250/133‑1 (MQ=255) tGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCg < 1:146206/133‑1 (MQ=255) gcgcTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCgg < 2:318580/133‑1 (MQ=255) cgcTTTACCCTTCAGCCCGTATAAACCTCCACACGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCGGa < 2:172622/133‑1 (MQ=255) cgcTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCg > 2:508157/1‑131 (MQ=255) cgcTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCg < 1:508157/131‑1 (MQ=255) cgcTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCGGa > 2:29800/1‑133 (MQ=255) cgcTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCGGa < 2:366609/133‑1 (MQ=255) cTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCGGa > 1:382896/1‑131 (MQ=255) cTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCGGa < 2:382896/131‑1 (MQ=255) ttACCCATCAGCCCGTGTAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCGGAgtgt < 1:64800/133‑1 (MQ=255) ttACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCGGAgtgt > 2:83416/1‑133 (MQ=255) ttACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCGGAgtgt < 1:142739/133‑1 (MQ=255) tACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCGGAgtg > 1:379103/1‑131 (MQ=255) tACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCGGAgtg < 2:379103/131‑1 (MQ=255) tACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCGGAGTGTa > 2:573537/1‑133 (MQ=255) cccATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCGGAGTGTACa < 2:501383/133‑1 (MQ=255) cccATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCGGAGTGTACa < 1:405766/133‑1 (MQ=255) ccATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCGGAGTGTACaa < 1:544047/133‑1 (MQ=255) ccATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCGGAGTGTACaa < 2:125032/133‑1 (MQ=255) cATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCGGAGTGTACAat < 1:29800/133‑1 (MQ=255) aaTCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCgg < 1:573537/133‑1 (MQ=255) tcctccACCCGACGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATcc > 2:355401/1‑129 (MQ=255) tcctccACCCGACGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATcc < 1:355401/129‑1 (MQ=255) cctccACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGAACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCGGAGAGTACAATTATTACAATCCGGCct > 2:50728/1‑133 (MQ=255) ctccACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCctc < 1:83416/133‑1 (MQ=255) cccGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTaa > 1:510356/1‑133 (MQ=255) gcgcgcCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCGGAGTGTCCAATTATAACAGTCTGGCCTCATTAATCAc > 1:285594/1‑133 (MQ=255) cATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATgg < 1:67149/133‑1 (MQ=255) cTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATc > 1:63929/1‑133 (MQ=255) tgAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCa > 2:12584/1‑133 (MQ=255) tgAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCATCAGTGTCCGTCGTTTCa > 1:286349/1‑133 (MQ=255) gTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTcg > 1:343172/1‑133 (MQ=255) tACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACGTTGGTGTCCACCGTTTTATTTTTctg > 2:282908/1‑131 (MQ=255) aCATTTTCACTGCGATAATGTGGGGAAAAGGGCGGTAAATACGGAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTcggc < 1:217756/133‑1 (MQ=255) cATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTcggcg < 2:510356/133‑1 (MQ=255) aTTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTcggcgg < 1:506548/133‑1 (MQ=255) ttCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGata < 1:282908/133‑1 (MQ=255) tCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGatat > 1:42259/1‑133 (MQ=255) gAAAAGGTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATaa < 1:614185/133‑1 (MQ=255) gTGCGGAAAAGCGCGGTAAATACGGAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCAt < 1:12584/133‑1 (MQ=255) | ATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATAAGGAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCAT > NC_000913/3884066‑3884304 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |