Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,051,398 C→T intergenic (‑223/‑63) cspH ← / → cspG CspA family protein CspH/cold shock protein CspG

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,051,3980CT100.0% 152.3 / NA 44intergenic (‑223/‑63)cspH/cspGCspA family protein CspH/cold shock protein CspG
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (18/26);  total (18/26)

TGCTTAATCTCAATTATCATGCGTTAATAGCTGCGTCGGTTTGAAAGACAGACAGCATACAAAGTAGTTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAACACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGACTGGTTTAGTAAAATGGTTTAACGCAGATAAAGGTTTTGGCTTTATCACTC  >  NC_000913/1051271‑1051527
                                                                                                                               |                                                                                                                                 
tGCTTAATCTCAATTATCATGCGTTAATAGCTGCGTCGGTTTGAAAGACAGACAGCATACAAAGTAGTTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAATACTaa                                                                                                                              >  1:133450/1‑133 (MQ=255)
  cTTAATCTCAATTATGATGCGTCAATAGCTTCGTCGGTTTGAAAGACAGACAGCATACAAAGTAGTTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAATACTAagt                                                                                                                            <  1:273964/133‑1 (MQ=255)
     aaTCTCAACTATCATCCGGTAATAGCTGCGGCGGTTTGAAAGACAGACAGCATACAAAGTAGTTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAATACTAagtagt                                                                                                                         <  1:249243/133‑1 (MQ=39)
              tATCATGCATTAATAGCTACGTGGGTTTGAAAGACAGACAGCATACAAAGTAGTTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAATACTAAGTAGTTTCTGTAtt                                                                                                                <  1:286594/133‑1 (MQ=255)
                tCATGCGTTATTAGCTGCGTCGGTTTGAGAGATAGACAGCAAACAAAGTAGTTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAATACTAAGTAGTTTCTGTATTaa                                                                                                              <  2:244400/133‑1 (MQ=255)
                 cATGCGTTAATAGCTGCGTCGGTTTGAAAGACAGACAGCATACAAAGTAGTTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAATACTAAGTAGTTTCTGTATTaaa                                                                                                             >  1:544210/1‑133 (MQ=255)
                  aTGCGTTAATAGCTGCGTCGGTTTGAAAGACAGACAGCATACAAAGTAGTTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAATACTAAGTAGTTTCTGTATTAAAg                                                                                                            >  1:6064/1‑133 (MQ=255)
                     cGTTAATAGCTGCGTCGGTTTGAAAGACAGACAGCATACAAAGTAGTTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAATACTAAGTAGTTTCTGTATTAAAGccc                                                                                                         >  2:570144/1‑133 (MQ=255)
                              cTGCGTCGGTTTGAAAGACAGACAGCATACAAAGTAGTTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAATACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCg                                                                                                >  1:374248/1‑133 (MQ=255)
                               tGCGTCGGTTTGAAAGACAGACAGCATACAAAGTAGTTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAATACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGa                                                                                               <  1:623702/133‑1 (MQ=255)
                               tGCGTCGGTTTGAAAGACAGACAGCATACAAAGTAGTTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAATACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGa                                                                                               >  1:605130/1‑133 (MQ=255)
                                              gacagacaGCATACTAAGTAGTTTACTAAATCAGTTCTCATTAACAGGCATTATCCCCTTCTTTTGAGTCTCTCTACTGAATACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATgaa                                                                                <  2:544210/133‑1 (MQ=255)
                                                  gacagCATACAAAGTAGTTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAATACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATgaaggaa                                                                            <  1:348218/133‑1 (MQ=255)
                                                  gacagCATACAAAGTAGTTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAATACTAAGTAGTTTCAGTATTAAAACCCAGTTTGCCGAAAGCCCCAAAATgaaggaa                                                                            >  2:286255/1‑133 (MQ=255)
                                                   acagCATACAAAGTAGTTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAATACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATgaaggaag                                                                           <  2:6064/133‑1 (MQ=255)
                                                       cATACAAAGTAGTTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAATACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTaaa                                                                       >  2:326710/1‑133 (MQ=255)
                                                         tACAAAGTAGTTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAATACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAat                                                                     <  2:474232/133‑1 (MQ=255)
                                                           cAAAGTAGTTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAATACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAatat                                                                   <  1:459543/133‑1 (MQ=255)
                                                             aaGTAGTTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAATACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGCAAGGCCCGAAAGGAGGGAAGTCAAATATGt                                                                 >  1:162707/1‑133 (MQ=255)
                                                             aaGTAGTTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAATACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGt                                                                 <  1:326710/133‑1 (MQ=255)
                                                               gtagtTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAATACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCt                                                               <  2:605130/133‑1 (MQ=255)
                                                                        tAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAATACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATg                                                      <  1:570144/133‑1 (MQ=255)
                                                                        tAAAGCAGATCTCATGATCAGGAATTATCCACTTCTTTTGAGTCTCTCTCCTGAATACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATg                                                      <  1:286255/133‑1 (MQ=255)
                                                                          aaGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAATACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAGAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGAc                                                    <  1:472150/133‑1 (MQ=255)
                                                                          aaGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAATACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGAc                                                    >  2:28741/1‑133 (MQ=255)
                                                                          aaGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAATACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGAc                                                    <  2:67333/133‑1 (MQ=255)
                                                                          aaGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAATACT‑AGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGAc                                                    >  1:533763/1‑132 (MQ=255)
                                                                          aaGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAATACT‑AGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGAc                                                    <  2:533763/132‑1 (MQ=255)
                                                                             cAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAATACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGACTgg                                                 >  2:432153/1‑133 (MQ=255)
                                                                                 tctcATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAATACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGAc                                                    >  1:478489/1‑126 (MQ=255)
                                                                                 tctcATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAATACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGAc                                                    <  2:478489/126‑1 (MQ=255)
                                                                                          cAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAATACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATTTGTATAATAAAATGACCGGTTTAGTAAAATgg                                    >  2:211167/1‑133 (MQ=255)
                                                                                            ggCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAATACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGACTGGTTTAGTAAAATGGtt                                  >  2:321682/1‑133 (MQ=255)
                                                                                             gCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAATACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGACTGGTTTAGTAAAATGGttt                                 <  1:28741/133‑1 (MQ=255)
                                                                                                 tATCCCCTTCTTTTGAGTCTCTCTCCTGAATACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGACTGGTTTAGTAAAATGGTTTAACg                             <  1:321682/133‑1 (MQ=255)
                                                                                                             ttGAGTCTCTCTCCTGAATACTAAGTAGTTTCTGAATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGACTGGTTTAGTAAAATGGTTTAACGCAGATAAAGGtt                 >  2:566864/1‑133 (MQ=255)
                                                                                                                  tctctctcCTGAATACTAAGTAGTTTCTGAATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGACTGGTTTAGTAAAATGGTTTAACGCAGATAAAGGTTTTGGc            <  1:566864/133‑1 (MQ=255)
                                                                                                                    tctctcCTGAATACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGACTGGTTTAGTAAAATGGTTTAACGCAGATAAAGGTTTTGGCtt          >  2:69335/1‑133 (MQ=255)
                                                                                                                     ctctcCTGAATACTAAGTCGTTTCTGTATTTAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGACTGGTTTAGTAAAATGGTTTAACGCAGATAAAGGTTTTGGCttt         <  1:211167/133‑1 (MQ=255)
                                                                                                                       ctcCTGAATACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGACTGGTTTAGTAAAATGGTTTAACGCAGATAAAGGTTTTGGCTTTAt       <  2:367975/133‑1 (MQ=255)
                                                                                                                       ctcCTGAATACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGACTGGTTTAGTAAAATGGTTTAACGCAGATAAAGGTTTTGGCTTTAt       >  1:367975/1‑133 (MQ=255)
                                                                                                                       ctcCTGAATACTAAGCAGTTTCTGTATTCAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGACTGGTTTAGTAAAATGGTTTAACGCAGATAAAGGTTTTGGCTTTAt       <  2:202168/133‑1 (MQ=255)
                                                                                                                         ccTGAATACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGACTGGTTTAGTAAAATGGTTTAACGCAGATAAAGGTTTTGGCTTTATCa     <  2:133450/133‑1 (MQ=255)
                                                                                                                            gAATACTACGTAGTTTCTCTATAAAAGCCCCGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGACTGGTTTAGTAAAATGGTTTAACGCAGATAAAGGTTTTGGCTTTATCACTc  <  1:188658/133‑1 (MQ=37)
                                                                                                                            gAATACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGACTGGTTTAGTAAAATGGTTTAACGCAGATAAAGGTTTTGGCTTTATCACTc  <  1:432153/133‑1 (MQ=255)
                                                                                                                               |                                                                                                                                 
TGCTTAATCTCAATTATCATGCGTTAATAGCTGCGTCGGTTTGAAAGACAGACAGCATACAAAGTAGTTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAACACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGACTGGTTTAGTAAAATGGTTTAACGCAGATAAAGGTTTTGGCTTTATCACTC  >  NC_000913/1051271‑1051527

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑