| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,994,589 | (T)6→7 | coding (118/1833 nt) | uvrC ← | excision nuclease subunit C |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,994,583 | 1 | . | T | 90.0% | 57.4 / 0.5 | 20 | coding (124/1833 nt) | uvrC | excision nuclease subunit C |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base T (8/10); total (9/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.57e-01 | |||||||||||
GATGTAGTTGTGTTCCAGCAACAGCGCTTCGGTTTCTGTGTGAGTAACCGTTACATCAATTTGCTGGATCTGGGCGACCAGCGCTTCGGTTTTGCGCGAAGCGAGGTTGCTACGGAAATAGCTGGAAAGCCG‑TTTTT‑TCAGGTCTTTCGCTTTGCCGACATAGATAACCGTACCACCAGCATCGTACATGCGATAAACGCCTGGCTGGCTGGTTACGGTTTTTAAAAACGCTTTTGCGTCAAACTGATCACTCACTGAC > NC_000913/1994452‑1994710 | gATGTAGTTGTGTTCCAGCAACAGCGCTTCGGTTTCTGTGTGAGTAACCGTTACATCAATTTGCTGGATCTGGGCGACCAGCGCTTCGGTTTTGCGCGAAGCGAGGTTGCTACGGAAATAGCTGGAAAGCCG‑t < 2:428702/133‑1 (MQ=255) aTGTAGTTGTGTTCTAGCAACAGCGCTTCGGTTTCTGTGTGAGTAACCGTTACATCAATTTGCTGGATCTGGGCGACCAGCGCTTCGGTTTTGCGCGAAGCGAGGTTGCTACGGAAATAGCTGGAAAGCCG‑tt < 1:350760/133‑1 (MQ=255) gTTGTGTTCCAGCAACAGCGCTTCGGTTTCTGTGTGAGTAACCGTTACATCAATTTGCTGGATCTGGGCGACCAGCGCTTCGGTTTTGCGCGAAGCGAGGTTTCTACGGTAATAGCTCGAAAGCGG‑ttttt‑tt > 1:194660/1‑132 (MQ=255) ttGTGTTCCAGCAACAGCGCTTCGGTTTCTGTGTGAGTAACCGTTACATCAATTTGCTGGATCTGGGCGACCAGCGCTTCGGTTTTGCGCGAAGCGAGGTTGCTACGGAAATAGCTGGAAAGCCG‑ttttt‑ttc < 2:286552/133‑3 (MQ=255) gcgcTTCGGTTTCTGTGTGAGTAACCGTTACATCAATTTGCTGGATCTGGGCGACCAGCGCTTCGGTTTTGCGCGAAGCGAGGTTGCTACGGAAATAGCTGGAAAGCCGTTTTTT‑TCAGGTCTTTCGCTTTGc < 2:16785/133‑1 (MQ=255) cTTCGGTTTCTGTGTGAGTAACCGTTACATCAATTTGCTGGATCTGGGCGACCAGCGCTTCGGTTTTGCGCGAAGCGAGGTTGCTACGGAAATAGCTGGAAAGCCGTTTTTT‑TCAGGTCTTTCGCTTTGCCGa < 1:15956/133‑1 (MQ=255) gtgtgAGTAACCGTTACATCAATTTGCTGGATCTGGGCGACCAGCGCTTCGGTTTTGCGCGAAGCGAGGTTGCTACGGAAATAGCTGGAAAGCCGTTTTTT‑TCAGGTCTTTCGCTTTGCCGACATAGATAAcc > 1:503787/1‑133 (MQ=255) tgAGTAACCGTTACATCAATTTGCTGGATCTGGGCGACCAGCGCTTCGGTTTTGCGCGAAGCGAGGTTGCTACGGAAATAGCTGGAAAGCCGTTTTTT‑TCAGGTCTTTCGCTTTGCCGACATAGATAACCGTa > 2:108869/1‑133 (MQ=255) tAACCGTTACGTCAACTTGCTGGATCTGTGCGTCCAGCGCTGCGGTTTTGCGCGAAGCGAGGTTGCTACGGTAATAGCTGGAAAGCCGTTTTTT‑TCAGGTCTTTCGCTTTGCCGACATAGATAACCGTaccac < 2:194660/133‑1 (MQ=255) aCCGTTACATCAATTTGCTGGATCCGGGCGACCAGCGCTTCGGTTTTGCGCGAAGCGAGGTTGCTACGGAAATAGCTGGAAAGCCG‑TTTTTCTCAGGTCTATCGATTTACCGACATATATAATCGTAccacca > 2:137397/1‑133 (MQ=255) cGTTACATCAATTTGCTGGATCTGGGCGACCAGCGCTTCGGTTTTGCGCGAAGCGAGGTTGCTACGGAAATAGCTGGAAAGCCGTTTTTT‑TCAGGTCTTTCGCTTTGCCGACATAGATAACCGTACCACCAGc > 2:266325/1‑133 (MQ=255) aTTTGCTGGATCTGGGCGACCAGCGCTTCGGTTTTGCGCGAAGCGAGGTTGCTACGGAAATAGCTGGAAAGCCGTTTTTT‑TCAGGTCTTTCTCTTTGCCGCCATAGATAACCGTACCACCAGGATCGTACATg > 2:142123/1‑133 (MQ=255) ggCGACCAGCGCTTCGGTTTTGCGCGAAGCGAGGTTGCTACGGAAATAGCTGGAAAGCCGTTTTTT‑TCAGGTCTTTCGCTTTGCCGACATAGATAACCGTACCACCAGCATCGTACATGCGATAAACGCctgg < 2:339884/133‑1 (MQ=255) ggCGACCAGCGCTTCGGTTTTGCGCGAAGCGAGGTTGCTACGGAAATAGCTGGAAAGCCGTTTTTT‑TCAGGTCTTTCGCTTTGCCGACATAGATAACCGTACCACCAGCATCGTACATGCGATAAACGCctgg < 1:505049/133‑1 (MQ=255) aCCAGCGCTTCGGTTTTGCGCGAAGCGAGGTTGCTACGGAAATAGCTGGAAAGCCGTTTTTT‑TCAGGTCTTTCGCTTTGCCGACATAGATAACCGTACCACCAGCATCGTACATGCGATAAACGCctggctgg < 1:360437/133‑1 (MQ=255) ggTTTTGCGCGAAGCGAGGTTGCTACGGAAATAGCTGGAAAGCCGTTTTTT‑TCAGGTCTTTCGCTTTGCCGACATAGATAACCGTACCACCAGCATCGTACATGCGATAAACGCCTGGCTGGCTGGTTACGGt < 2:393288/133‑1 (MQ=255) aGGTTGCTACGGAAATAGCTGGAAAGCCGTTTTTT‑TCAGGTCTTTCGCTTTGCCGACATAGATAACCGTACCACCAGCATCGTACATGCGATAAACGCCTGGCTGGCTGGTTACGGTTTTTAAAAACGCtttt < 1:266325/133‑1 (MQ=255) cTACGGAAATAGCTGGAAAGCCGTTTTTT‑TCAGGTCTTTCGCTTTGCCGACATAGATAACCGTACCACCAGCATCGTACATGCGATAAACGCCTGGCTGGCTGGTTACGGTTTTTAAAAACGCTTTTGCGTCa > 1:17361/1‑133 (MQ=255) aGCTGGAAAGCCGTTTTTT‑TCAGGTCTTTCGCTTTGCCGACATAGATAACCGTACCACCAGCATCGTACATGCGATAAACGCCTGGCTGGCTGGTTACGGTTTTTAAAAACGCTTTTGCGTCAAACTGAtcac > 2:464762/1‑133 (MQ=255) gCTGGAAAGCCGTTTTTT‑TCAGGTCTTTCGCTTTGCCGACATAGATAACCGTACCACCAGCATCGTACATGCGATAAACGCCTGGCTGGCTGGTTACGGTTTTTAAAAACGCTTTTGCGTCAAACTGAtcact > 2:439769/1‑133 (MQ=255) tGGAAAGCTG‑TTTTTCTCAGGTTTTTCGCTTTGCCGACATAGATAACCGTACCACCAGCATCGTACATGCGATAAACGCCTGGCTGGCTGGTTACGGTTTTTAAAAACGCTTTTGCGTCAAACTGAtcactca < 1:142123/133‑1 (MQ=255) gAAAGCCGTTTTTT‑TCAGGTCTTTCGCTTTGCCGACATAGATAACCGTACCACCAGCATCGTACATGCGATAAACGCCTGGCTGGCTGGTTACGGTTTTTAAAAACGCTTTTGCGTCAAACTGATcactcact < 1:108486/133‑1 (MQ=255) gAAAGCCGTTTTTT‑TCAGGTCTTTCGCTTTGCCGACATAGATAACCGTACCACCAGCATCGTACATGCGATAAACGCCTGGCTGGCTGGTTACGGTTTTTAAAAACGCTTATGCTTCAAACTGATcactcact > 1:187843/1‑133 (MQ=255) aGCCGTTTTTT‑TCAGGTCTTTCGCTTTGCCGACATAGATAACCGTACCACCAGCATCGTACATGCGATAAACGCCTGGCTGGCTGGTTACGGTTTTTAAAAACGCTTTTGCGTCAAACTGATCACTCACTGAc < 1:464762/133‑1 (MQ=255) | GATGTAGTTGTGTTCCAGCAACAGCGCTTCGGTTTCTGTGTGAGTAACCGTTACATCAATTTGCTGGATCTGGGCGACCAGCGCTTCGGTTTTGCGCGAAGCGAGGTTGCTACGGAAATAGCTGGAAAGCCG‑TTTTT‑TCAGGTCTTTCGCTTTGCCGACATAGATAACCGTACCACCAGCATCGTACATGCGATAAACGCCTGGCTGGCTGGTTACGGTTTTTAAAAACGCTTTTGCGTCAAACTGATCACTCACTGAC > NC_000913/1994452‑1994710 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |