| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,133,301 | +G | coding (657/714 nt) | yghS ← | putative ATP‑binding protein YghS |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,133,297 | 1 | . | G | 83.3% | 11.8 / ‑2.3 | 6 | coding (661/714 nt) | yghS | putative ATP‑binding protein YghS |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base G (0/5); total (0/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGCGGCGCGGTTGTACTATTAACAGTTTGAGTTTGTAGTGCATCCATTCGTTAAATCATCCCCTATCCATTTTGGTGATCAGGAAAGCGCGGCGTGAATTGCGCGTAGTGACGCTTGCAGAATTTCATCGGC‑GGGG‑TGTCGCCCATCCAGTTCAAGGATCTTTGCGCCATTGAATGTCAGTTGCGGCGTAACGGCGATTTTTTCCTGTAACGCTGCCAGTTGGTGGTCAGGTTTACGCGCAAACGCGGTTTGTTCATC > NC_000913/3133166‑3133423 | tGCGGCGCGGTTGTACTATTAACAGTTTGAGTTTGTAGTGCATCCATTCGTTAAATCATCCCCTATCCATTTTGGTGATCAGGAAAGCGCGGCGTGAATTGCGCGTAGTAACGCTTGCAGAATTTCATcggc‑g < 1:416130/133‑1 (MQ=255)tGCGGCGCGGTTGTACTATTAACAGTTTGAGTTTGTAGTGCATCCATTCGTTAAATCATCCCCTATCCAGTTTGGTGATCAGGAAAGCGCGGCGTGAATTGCGCGTAGTGACGCTTGCAGAATTTCATcggc‑g < 1:298414/133‑1 (MQ=255) gcgcGGTTGTACTATTAACAGTTTGAGTTTGTAGTGCATCCATTCGTTAAATCATCCCCTATCCATTTTGGTGATCAGGAAAGCGCGGCGTGAATTGCGCGTAGTGACGCTTGCAGAATTTCATCGGC‑ggggg < 1:294271/133‑2 (MQ=255) cTATTAACAGGTTGATTTTGTAGTCCATCCATTCGTTAAATTATCCCCTATCCATTTTGGTGATCAGGAAAGCGCGGCGTGAATTGCGCGTAGTGACGCTTGCAGAATTTCATCGGCGGGGG‑TGTCGCCCATc < 2:154272/133‑1 (MQ=255) tgTAGTGCATCCATTCGTTAAATCCTCCACTACCCATTTTGCTGATCAGGAAAGCGCGGCGTGAATTGCGCGTAGTGACGCTTGCAGAATTTCATCGGCGGGGG‑TGTCGCCCATCCAGTTCAAGGATCTTTgc < 2:139773/133‑1 (MQ=255) tGCATCCATTCGTTACATCATCCCCTATCCATATTGGTGATTAGGAAAGCGCGGCGTGAATTGCGCGTAGTGACGCTTGCAGAATTTCATCGGCGGGGG‑TGTCGCCCATCCAGTTCAAGGATCTTTGCTCCAt < 2:158713/133‑1 (MQ=255) aTCCATTCGTTAAATCATCCCCTATCCATTTTGGTGATCAGGAAAGCGCGGCGTGAATTGCGCGTAGTGACGCTTGCAGAATTTCATCGGCGGGGG‑TGTCGCCCATCCAGTTCAAGGATCTTTGCGCCATTGa < 1:510884/133‑1 (MQ=255) gTTAAATCATCCCCTATCCATTTTGGTGATCAGGAAAGCGCGGCGTGAATTGCGCGTAGTGACGCTTGCAGAATTTCATCGGCGGGGG‑TGTCGCCCATCCAGTTCAAGGATCTTTGCGCCATTGAATGTCAGt < 1:8209/133‑1 (MQ=255) gACGCTTGCAGAATTTCATCGGCGGGGG‑TGTCGCCCATCCAGTTCAAGGATCTTTGCGCCATTGAATGTCAGTTGCGGCGTAACGGCGATTTTTTCCTGTAACGCTGCCAGTTGGTGGTCAGGTTTACGCGCa < 1:440401/133‑1 (MQ=255) aTCGGC‑GGGGATGTCCCCCATCCATTTCTAGGGTCTTTGCGACATTGAATGTCAGTTGCGGCGTAACGGCGATTTTTTCCTGTAACGCTGCCAGTTGGTGGTCAGGTTTACGCGCAAACGCGGTTTGTtcatc < 2:196881/133‑1 (MQ=255) | TGCGGCGCGGTTGTACTATTAACAGTTTGAGTTTGTAGTGCATCCATTCGTTAAATCATCCCCTATCCATTTTGGTGATCAGGAAAGCGCGGCGTGAATTGCGCGTAGTGACGCTTGCAGAATTTCATCGGC‑GGGG‑TGTCGCCCATCCAGTTCAAGGATCTTTGCGCCATTGAATGTCAGTTGCGGCGTAACGGCGATTTTTTCCTGTAACGCTGCCAGTTGGTGGTCAGGTTTACGCGCAAACGCGGTTTGTTCATC > NC_000913/3133166‑3133423 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |