BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3363001 =	83 (2.860)	47 (1.630)	37/262	0.0	53.3%	coding (195/2382 nt)	yhcD	putative fimbrial usher protein YhcD
*	?	NC_000913	3766087 =	0 (0.000)	47 (1.630)	37/262	0.0	53.3%	coding (3905/4134 nt)	rhsA	rhs element protein RhsA

Only 100 of 132 total aligned reads displayed.

GATGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATA  >  NC_000913/3362870‑3363134

ttcctgaagtacgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgactgcaacaattccacgggaagctatcattgatatatctaAg                                                                                                                                      <  2:180053‑M1/2‑1 (MQ=255)

 aTGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGt                                                                                                                                     >  1:344904/1‑133 (MQ=255)

  tGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCATCCCGTTTTGTGCGAGGCGAATATTCACTGAGAGTATCAGTa                                                                                                                                    >  2:140125/1‑133 (MQ=255)

    tgaagtacgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTaaa                                                                                                                                  <  2:313345‑M1/6‑1 (MQ=255)

      ataGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCTAGGTGAAAATTCACTGATAGTTTCAGTAAATg                                                                                                                                >  2:176988/1‑133 (MQ=255)

         tgaagtacgtcacatctgtcgggttttttcccatcactccagaatctgtcatttgtcattgacacgatcagttatccctgtgtctgcaacacttccacgagaaggtgtcattgttatatctaACTAAATGGCg                                                                                                                             <  2:250424‑M1/11‑1 (MQ=255)

            gtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGaaa                                                                                                                          <  2:345537‑M1/14‑1 (MQ=255)

             tcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGaaaa                                                                                                                         <  2:307306‑M1/15‑1 (MQ=255)

              cacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGaaaaa                                                                                                                        <  1:343790‑M1/16‑1 (MQ=255)

               gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGaaaaaa                                                                                                                       >  1:57239/1‑133 (MQ=255)

               gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGaaaaaa                                                                                                                       >  1:286511/1‑133 (MQ=255)

               gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGaaaaaa                                                                                                                       >  1:357494/1‑133 (MQ=255)

               gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGaaaaaa                                                                                                                       >  1:320989/1‑133 (MQ=255)

                 atctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGaaaaaaaa                                                                                                                     <  1:68636‑M1/19‑1 (MQ=255)

                  gCTGTTGATTTTGATTGGAAAACATTAAAAGCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGaaaaaaagg                                                                                                                    <  1:176988/133‑3 (MQ=255)

                   ctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAgg                                                                                                                   >  2:343790‑M1/113‑133 (MQ=255)

                        gggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACa                                                                                                              >  2:84899‑M1/108‑133 (MQ=255)

                                 cGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGTG‑AAAAAAAGGCAACATTGCTAcgcg                                                                                                    <  2:344904/133‑1 (MQ=255)

                                                   gtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttcctcgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCg                                                                                   <  2:466743‑M1/53‑1 (MQ=255)

                                                   gtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGTAAAAAAAGACAAGATTGCTACGCGCATTGAAGAAAATGGCg                                                                                   <  2:190615‑M1/53‑1 (MQ=255)

                                                   cTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGGAACATTGATACGCGCTCTGATGAAAATGGCGa                                                                                  >  2:157672/1‑133 (MQ=255)

                                                   cTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAGCATTGCTGCGCGCTATGATGAAAATGGCGa                                                                                  >  1:159369/1‑133 (MQ=255)

                                                   cTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGa                                                                                  >  2:459899/1‑133 (MQ=255)

                                                      ggTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAt                                                                               <  2:286511/133‑1 (MQ=255)

                                                       tttattatgtcattgacacgatcagttagccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAt                                                                               >  1:466743‑M1/77‑133 (MQ=255)

                                                        ttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAtt                                                                              <  2:109425‑M1/58‑1 (MQ=255)

                                                                  aaTATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCa                                                                   >  2:66742/1‑133 (MQ=255)

                                                                  aaTATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCa                                                                   >  1:492687/1‑133 (MQ=255)

                                                                  aaTATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTATGATGAAAATGGCGACATTTGGCTTGATCa                                                                   >  1:211661/1‑133 (MQ=255)

                                                                  aaTATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATCGCTACGCGATTTTATGAAAATGGCGCCATTTGTCTTGATCa                                                                   >  2:228749/1‑133 (MQ=255)

                                                                  aaTATATCGCATTATTTTTCCCGTTCAGCCCGTTTTCTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCa                                                                   >  1:258426/1‑133 (MQ=255)

                                                                     atatCGCATTCTTTTTCCCGTTCAACCCATTTGTTGCCAGGCGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGc                                                                <  2:159369/133‑1 (MQ=255)

                                                                       atCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTATGCGCTTTGTTGACAATTGCGACATTTGTCTTGATCAGGCAt                                                              >  2:180475/1‑133 (MQ=255)

                                                                        tCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGc                                                                <  1:24709/130‑1 (MQ=255)

                                                                         cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGGGCTTTGATGAAAATGGCGGCATGTGACTTGATCAGGCAttt                                                            >  1:246520/1‑133 (MQ=255)

                                                                         cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAttt                                                            >  1:100657/1‑133 (MQ=255)

                                                                         cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAttt                                                            >  2:325065/1‑133 (MQ=255)

                                                                         cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAttt                                                            >  2:114069/1‑133 (MQ=255)

                                                                         cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAttt                                                            >  1:319801/1‑133 (MQ=255)

                                                                         cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAttt                                                            >  1:20211/1‑133 (MQ=255)

                                                                         cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATCAAATTGGAGACATTTGTCTTGCTCAGGCAttt                                                            >  2:212020/1‑133 (MQ=255)

                                                                         cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGAGCTTTGATTAAAATGGCGACATTTGACTTGCTCAGGCAttt                                                            >  2:201356/1‑133 (MQ=255)

                                                                          gCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTc                                                           >  1:283885/1‑133 (MQ=255)

                                                                           cATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCt                                                          >  2:41907/1‑133 (MQ=255)

                                                                           cATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCt                                                          >  2:461234/1‑133 (MQ=255)

                                                                           cATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCt                                                          >  1:495758/1‑133 (MQ=255)

                                                                                     cctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGATAATGGCGAAATTGGCCATGATCAGGTATTTGagcaacaatc                                                 <  2:249557‑M1/87‑3 (MQ=255)

                                                                                     cccGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGcc                                                >  2:420453/1‑133 (MQ=255)

                                                                                     cccGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGcc                                                >  1:515270/1‑133 (MQ=255)

                                                                                        gtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCgg                                              <  1:280645‑M1/90‑1 (MQ=255)

                                                                                        gTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGt                                             >  1:352981/1‑133 (MQ=255)

                                                                                         ttCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGACGACATTTGTCTAGATGAGGCATTTGTGCAACAAGCCGGtt                                            >  2:136977/1‑133 (MQ=255)

                                                                                         tgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGt                                             <  1:309067‑M1/91‑1 (MQ=255)

                                                                                         cgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGt                                             <  2:478215‑M1/91‑1 (MQ=255)

                                                                                          gtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACTCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAg                                                  >  2:308416‑M1/42‑127 (MQ=255)

                                                                                          gtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAg                                                  <  1:308416‑M1/86‑1 (MQ=255)

                                                                                          gtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGtt                                            <  2:509156‑M1/92‑1 (MQ=255)

                                                                                             gCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaa                                        >  2:112666/1‑133 (MQ=255)

                                                                                                   tttttGCCTGGTGAATATCCACGGATAGTAGCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTcc                                  <  1:228749/133‑1 (MQ=255)

                                                                                                   atttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTCTCTTGATCAGGCATTTCTGCAACAACCCGGATTAAAAATTc                                   <  2:211612‑M1/101‑1 (MQ=255)

                                                                                                        gCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTg                             <  1:365961/133‑1 (MQ=255)

                                                                                                         acgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTg                             >  2:309067‑M1/27‑133 (MQ=255)

                                                                                                                   atTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAAt                  >  2:266667/1‑133 (MQ=255)

                                                                                                                     tCACTGATAGTATCATTAAATGGCG‑AAAAAAATGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATgg                <  2:232925/133‑1 (MQ=255)

                                                                                                                     tCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATgg                <  2:100657/133‑1 (MQ=255)

                                                                                                                     tCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATgg                <  2:258426/133‑1 (MQ=255)

                                                                                                                     tCACTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATgg                <  1:470245/133‑1 (MQ=255)

                                                                                                                     tCACTGATAGTATCAATACATGCCG‑AAAAACAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATgg                <  1:140125/133‑1 (MQ=255)

                                                                                                                       ttgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGc               >  1:190615‑M1/13‑133 (MQ=255)

                                                                                                                       aCTGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCTACAAGCCGGTTTTAAAATTCCTTCTTAAGAGAAAAATGGCt              >  2:144899/1‑133 (MQ=255)

                                                                                                                       aCTGATAGTATCAGTAAAAGGC‑AAAAAAAATGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCt              <  1:201356/133‑1 (MQ=255)

                                                                                                                         tGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt            <  1:114069/133‑1 (MQ=255)

                                                                                                                         tGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt            <  2:336144/133‑1 (MQ=255)

                                                                                                                         tGATAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt            <  2:501774/133‑1 (MQ=255)

                                                                                                                           aTAGTATCTGTAAATTGC‑AAAAAAAAGGCATCATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa          <  1:180475/133‑1 (MQ=255)

                                                                                                                           aTAGTATCCGTAAATTGC‑CAAACAAAGGCACCATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa          <  1:157672/133‑1 (MQ=255)

                                                                                                                           aTAGTATCATCAAATAGCG‑AAAAAAAGGAAACTTTGCTACGGGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa          <  2:246520/133‑1 (MQ=255)

                                                                                                                           aTAGTATCAGTAAATTGCG‑AAAAACAGGGAACCTTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa          <  2:211661/133‑1 (MQ=255)

                                                                                                                           aTAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa          >  2:40243/1‑133 (MQ=255)

                                                                                                                           aTAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa          <  2:352981/133‑1 (MQ=255)

                                                                                                                           aTAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa          <  2:471490/133‑1 (MQ=255)

                                                                                                                           aTAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa          <  2:495758/133‑1 (MQ=255)

                                                                                                                           aTAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa          <  1:420453/133‑1 (MQ=255)

                                                                                                                           aTAGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa          >  1:365719/1‑133 (MQ=255)

                                                                                                                            atatctaATTAAATGCCGAAAAGAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa          >  1:211612‑M1/8‑133 (MQ=255)

                                                                                                                            atatctaAGTAAATGTCGAAAAAAGAGGTAACATTGCTACGTGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa          >  2:204196‑M1/8‑133 (MQ=255)

                                                                                                                             aGTATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACg        <  1:315012/133‑1 (MQ=255)

                                                                                                                              atctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACg        >  2:280645‑M1/6‑133 (MQ=255)

                                                                                                                              atctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACg        >  1:417009‑M1/6‑133 (MQ=255)

                                                                                                                               tctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGa       <  1:454747‑M1/129‑1 (MQ=255)

                                                                                                                               tATCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGAc      <  2:515270/133‑1 (MQ=255)

                                                                                                                                ccaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGAC‑TTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt     >  1:501496‑M1/4‑133 (MQ=255)

                                                                                                                                aTCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt     <  1:112666/133‑1 (MQ=255)

                                                                                                                                aTCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt     <  1:40243/133‑1 (MQ=255)

                                                                                                                                aTCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt     <  2:471260/133‑1 (MQ=255)

                                                                                                                                aTCAGTAAATGGCG‑AAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt     <  2:20211/133‑1 (MQ=255)

                                                                                                                                 taAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt     >  1:307306‑M1/3‑133 (MQ=255)

                                                                                                                                  aAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAATAAATGGCTGATACGACta    <  1:204196‑M1/132‑1 (MQ=255)

                                                                                                                                   AGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtat   <  1:373842‑M1/133‑1 (MQ=255)

                                                                                                                                   AGTAAATGGCGAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTACTGAAGAGAAAGATGGCTGTTACGACtata  <  1:151883‑M1/133‑1 (MQ=255)

GATGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATA  >  NC_000913/3362870‑3363134

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.