| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 568,195 | C→T | pseudogene (161/213 nt) | renD → | DLP12 prophage; protein RenD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 568,195 | 0 | C | T | 98.4% | 208.7 / NA | 63 | pseudogene (161/213 nt) | renD | DLP12 prophage; protein RenD |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (22/40); minor base G (1/0); total (23/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.65e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGCGGGCAGGAATCCTGGTCGTTGATGGTAAGGTCTGGCGAACGGTGTATTACCGGTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAA > NC_000913/568066‑568319 | cgcgGGCAGGAATCCTGGTCGTTGATGGTAAGGTCTGGCGAACGGTGTATTACCGGTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGAt < 2:400326/133‑1 (MQ=255) aTCCTGGTCGTTGATGGTAAGGTCTGGCGAACGGTGTATTACCGGTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTAt < 1:55230/133‑1 (MQ=255) tCCTGGTCGTTGATGGTAAGGTCTGGCGAACGGTGTATTACCGGTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTAtt < 2:33149/133‑1 (MQ=255) ccTGGTCGTTGATGGTAAGGTCTGGCGAACGGTGTATTACCGGTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTg < 2:335326/133‑1 (MQ=255) cTGGTCGTTGATGGTAAGGTCTGGCGAACGGTGTATTACCGGTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGa < 2:51807/133‑1 (MQ=255) cTGGTCGTTGATGGTAAGGTCTGGCGAACGGTGTATTACCGGTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGa < 1:340244/133‑1 (MQ=255) tGGTCGTTGATGGTAAGGTCTGGCGAACGGTGTATTACCGGTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGGGAGGAAACGGGTATTGAg > 1:174014/1‑133 (MQ=255) ggTCGTTGATGGTAAGGTCTGGCGAACGGTGTATTACCGGTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAgg < 1:94421/133‑1 (MQ=255) ggTCGTTGATGGTAAGGTCTGGCGAACGGTGTATTACCGGTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAgg < 1:41521/133‑1 (MQ=255) ggTCGTTGATGGTAAGGTCTGGCGAACGGTGTATTACCGGTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAgg < 1:415410/133‑1 (MQ=255) ttGATGGTAAGGTCTGGCTAACGGTGTATTACCGGTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATATGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGtata < 1:189789/133‑1 (MQ=255) gATGGTAAGGTCTGGCGAACGGTGTATTACCGGTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGtatata > 1:281754/1‑133 (MQ=255) tGGCGAACGGTGTATTACCGGTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCaa > 1:482347/1‑133 (MQ=255) ggCGAACGGTGTATTTCCGGTTTGCTACCATAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAAt < 1:173410/133‑1 (MQ=255) ggCGAACGGTGTATTACCGGTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAAt > 2:316200/1‑133 (MQ=255) cGAACGGTGTATTACCGGTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATgg < 2:94251/133‑1 (MQ=255) cGGTGTATTACCGGTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAAt < 2:284598/127‑1 (MQ=255) cGGTGTATTACCGGTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAAt > 1:284598/1‑127 (MQ=255) ggTGTATTACCGGTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAgca < 2:473174/133‑1 (MQ=255) ttACCGGTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAatga < 1:316200/133‑1 (MQ=255) ccGGTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAAtgatga < 1:369517/133‑1 (MQ=255) ggTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGaaa < 1:401134/133‑1 (MQ=255) ggTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGaaa < 1:310385/133‑1 (MQ=255) gTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGGGGGTATATGAAAGAACGTCAATGGGGGCACAATGATGAAAc > 2:135192/1‑133 (MQ=255) gTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGGGGGTATATCAAATAACTTCAATGGGTGCACAATGATGAAAc > 2:175992/1‑133 (MQ=255) gTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATGAAAAAACAACAATGGGAGCACCTTGATGAAAc > 2:251409/1‑133 (MQ=255) gTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGAAAc > 2:315446/1‑133 (MQ=255) gTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGAAAc > 1:29398/1‑133 (MQ=255) gTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGAAAc > 2:72593/1‑133 (MQ=255) gTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGAAAc > 1:494600/1‑133 (MQ=255) gTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGAAAc > 1:256854/1‑133 (MQ=255) gTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGAAAc > 2:403231/1‑133 (MQ=255) tCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGTGTATATAAGAGAGCATGAATGGGAGGACAAGGATGAAACAg > 2:132127/1‑133 (MQ=255) tCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGAAACAg > 2:349290/1‑133 (MQ=255) tCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGAAACAg > 1:53417/1‑133 (MQ=255) aTGGGAAGGAAAGGTGAGCATGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGAAACAGGTGAGTTGAGTTCaaa < 1:409492/133‑1 (MQ=255) gggAAGGAAACGTGATCACGAATCGGATTTTTGAGGAGTGTAGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGAAACAGGTGAGTTGAGTTCAAACt < 2:195634/133‑1 (MQ=255) ggaaggaaAGGTGAGTACGAATCTGATTTTCAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGAAACAGGTGAGTTGAGTTCAAACTg < 1:169195/133‑1 (MQ=255) ggaaggaaAGGTGAGTACGAATCTCATTATTATGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGAAACAGGTGAGTTGAGTTCAAACTg < 2:174014/133‑1 (MQ=255) ggaaggaaAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGAAACAGGTGAGTTGAGTTCAAACTg < 1:286165/133‑1 (MQ=255) gaaggaaAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGAAACAGGTGAGTTGAGTTCAAACTgt > 2:472814/1‑133 (MQ=255) gaaAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGAAACAGGTGAGTTGAGTTCAAACTgtagta < 2:281754/133‑1 (MQ=255) gaaAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGAAACAGGTGAGTTGAGTTCAAACTgtagta < 1:317995/133‑1 (MQ=255) gCACGAATTTGATTTTTAAGGACTGTCGCCGGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTGCAATtctct < 1:251409/133‑1 (MQ=255) gCACGAATCTGATTTCTACGGACTGTCGCCTGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATtctct < 1:135192/133‑1 (MQ=255) cACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATtc > 1:387115/1‑129 (MQ=255) cACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATtc < 2:387115/129‑1 (MQ=255) cACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGAAACAGGTGAGTTGAGTACAAACTGTAGTACAATtctctc > 1:204937/1‑133 (MQ=255) gATTTTTAAGCAGTGCCGCCAGAGTGCCTTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGaa < 2:138035/133‑1 (MQ=255) aTTTTTAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAAc < 2:315410/133‑1 (MQ=255) tttAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAgg < 2:29398/133‑1 (MQ=255) tttAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAgg < 1:72593/133‑1 (MQ=255) ttAAGGAGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGa < 1:315446/133‑1 (MQ=255) aGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAat > 1:449733/1‑133 (MQ=255) aGTGTCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAat > 1:505759/1‑133 (MQ=255) tgtCGCCAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAatat > 2:405634/1‑133 (MQ=255) cAGAGTGCCGTGATGCAACGGGCATTGAGGCTATATAAAAGAACATCAATGGGAGCACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATg < 1:132127/133‑1 (MQ=255) cAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATg < 2:98320/133‑1 (MQ=255) cAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATg < 2:482347/133‑1 (MQ=255) cAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATg < 2:275363/133‑1 (MQ=255) cAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATg < 1:87884/133‑1 (MQ=255) cAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATg < 1:472814/133‑1 (MQ=255) cAGAGTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTACAGTTTGAACAGGAAAGAATATGCTATg < 2:445163/133‑1 (MQ=255) gagTGCCGTGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAGCACAATGATGAAACAGGTGAGTTGAGTTCAAACTGGAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGat < 2:53417/133‑2 (MQ=255) | CGCGGGCAGGAATCCTGGTCGTTGATGGTAAGGTCTGGCGAACGGTGTATTACCGGTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAA > NC_000913/568066‑568319 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |