| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,734,543 | (C)8→10 | coding (492/732 nt) | pgeF ← | polyphenol oxidase YfiH |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,734,535 | 1 | . | C | 96.6% | 631.7 / 10.0 | 179 | coding (500/732 nt) | pgeF | polyphenol oxidase YfiH |
| Reads supporting (aligned to +/- strand): ref base . (3/3); new base C (109/62); total (112/67) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.70e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.49e-01 | |||||||||||
| * | NC_000913 | 2,734,535 | 2 | . | C | 88.3% | 583.6 / 60.8 | 179 | coding (500/732 nt) | pgeF | polyphenol oxidase YfiH |
| Reads supporting (aligned to +/- strand): ref base . (13/8); new base C (99/59); total (112/67) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 199 total aligned reads displayed.
GCCGCCGAAAATTTGCTCAACACCCACGTTCGCCAGACGCTGCCGGGCAAGCTGATAAATATCCGCCAGATACTTATCACCATGCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CT‑‑‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGCACGCCTGCGCACAGTCCACGCCAGCCAGCATGAG > NC_000913/2734396‑2734667 || gccgccGAAAATTTGCTCAACACCCACGTTCGCCAGACGCTGCCGGGCAAGCTGATAAATATCCGCCAGATACTTATCACCATGCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑Ct > 2:6729693/1‑140 (MQ=255) ccgAAAATTTGCTCACCACCCACGTCCGCCAGACGCTCCCGGGCAAGCTGATAAATATCCGCCAGATACTTATCACCATGCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CT‑‑‑‑cccc < 1:2705958/140‑1 (MQ=255) aaTTTGCTCAACACCCACGTTCGCCAGACGCTGCCGGGCAAGCTGATAAATATCCGCCAGATACTTATCACCATGCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CT‑‑‑‑cccc‑‑ccc‑‑cc < 1:902930/140‑2 (MQ=255) aaCACCCACGTTCGCCAGACGCTGCCGGGCAAGCTGATAAATATCCGCCAGATACTTATCACCATGCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGaa < 2:12955/140‑1 (MQ=255) aaCACCCACGTTCGCCAGACGCTGCCGGGCAAGCTGATAAATATCCGCCAGATACTTATCACCATGCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGaa < 1:777732/140‑1 (MQ=255) cACGTTCGCCAGACGCTGCCGGGCAAGCTGATAAATATCCGCCAGATACTTATCACCATGCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCCCGCGAACCC‑‑CC‑‑‑‑CCCC‑‑CCC‑‑CACTTCGAAcgcgcg < 1:1138885/140‑1 (MQ=255) ccAGACGCTGCCGGGCAAGCTGATAAATATCCGCCAGATCCTTATCACCATGCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTC‑‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAAt > 2:190178/1‑140 (MQ=255) aCGCTGCCGGGCAAGCTGATAAATATCCGCCAGATACTTATCACCATGCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGc < 1:4257050/140‑1 (MQ=255) aCGCTGCCGGGCAAGCTGATAAATATCCGCCAGATACTTATCACCATGCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGc < 1:6335839/140‑1 (MQ=255) gCCGGGCAAGCTGATTAATATCGGCTAGAAACTTATCCCCATGCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGcc < 1:2449946/140‑1 (MQ=255) tAAATATCCGCCAGATACTTATCACCATGCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTC‑‑‑CCCC‑‑CCC‑‑CCCTTCGAACGCGCGGGGACCAATTGCCGGCCCCAACCAGGCGAGaa > 1:816508/1‑140 (MQ=255) atCCGCCAGATACTTATCACCATGCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCCATTGCCGGCCCTAGCCAGGCGAGAATAtt > 1:3182429/1‑140 (MQ=255) atCCGCCAGATACTTATCACCATGCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATAtt > 2:1746671/1‑140 (MQ=255) tCCGCCAGATACTTATCACCATGCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATAttt > 1:5208897/1‑140 (MQ=255) ccGCCAGATACTTATCACCATGCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATAtttt > 1:1398689/1‑140 (MQ=255) gCCAGATACTTATCACCATGCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACCCGCGTGGCCCAATTGCCGGCCCTAACCAGGCGAGAATATTTTcc > 1:119803/1‑140 (MQ=255) ccAGATACTTATCACCATGCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATAttt > 2:3882508/1‑136 (MQ=255) ccAGATACTTATCACCATGCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCg > 2:3810166/1‑140 (MQ=255) aTACTTATCACCATGCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCTCGCGGACCAATTCCCGGCCCTAACCAGGCGAGAATATTTTCCGGAtt > 1:3866779/1‑140 (MQ=255) tATCACCATGCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGCCCCCAACCAGGCAAGAAGATTTTCCGGATTATCAg > 2:3154827/1‑140 (MQ=255) aTCACCATGCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTTGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGc > 1:4057219/1‑140 (MQ=255) aTCACCATGCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGGCCTCACCAGGCGGGAATATTTTCCGGATTATCAGc > 2:2987485/1‑140 (MQ=255) aTCACCATGCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGc > 1:5645856/1‑140 (MQ=255) tCACCATGCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGTCCAATTGCGGGCACTATCCAGCCGAGAATATTTTCCGGATTATCAgta > 2:2737443/1‑138 (MQ=255) tCACCATGCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCa < 1:1668029/140‑1 (MQ=255) aCCATGCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCaaa > 1:1806939/1‑140 (MQ=255) ccATGCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCCC‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGCGGACAAATTCCCGCCCCTATCGAGCCGAGAATATTATCCGGTTTCTCAGaaaa > 2:3624928/1‑140 (MQ=255) cATGCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTC‑‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACa > 1:3938355/1‑140 (MQ=255) tGCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAg > 2:6327072/1‑140 (MQ=255) tGCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAg > 2:4267003/1‑140 (MQ=255) tGCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAg > 1:1900525/1‑140 (MQ=255) gCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAATCAGGCGAGAATTTTCTCCGGAATATCAGCAAAACAgg > 1:3001730/1‑140 (MQ=255) gCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAgg > 1:527899/1‑140 (MQ=255) gCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAgg > 2:6086877/1‑140 (MQ=255) gCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAgg > 2:4714303/1‑140 (MQ=255) gCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAgg > 1:6563755/1‑140 (MQ=255) gCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAgg > 1:6397054/1‑140 (MQ=255) aatgaaAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCCGGCGAGAATATTTTCCCGATTTTCAGCAAAAAAGGAAAc > 2:2634785/1‑140 (MQ=255) aatgaaAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAAc > 2:7573877/1‑140 (MQ=255) aatgaaAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAAc > 1:6119839/1‑140 (MQ=255) aatgaaAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAAc > 1:6294954/1‑140 (MQ=255) atgaaAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGGGAGAATACTTTGCGGATTATCGGCAAAACAGGAAAcc > 1:2075630/1‑140 (MQ=255) gaaAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAC‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGt > 2:4617402/1‑140 (MQ=255) gaaAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGt < 2:6801624/140‑1 (MQ=255) gaaAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGt < 1:6034574/140‑1 (MQ=255) gaaAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGt > 1:4934626/1‑140 (MQ=255) gaaAGCTGCACTTGCTTTAGCGCCTTCTGTCATAAACACCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGt < 1:3599628/140‑1 (MQ=255) aGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑CGTCC‑‑‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGtctc > 1:7524590/1‑140 (MQ=255) gCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTctct < 1:6086877/140‑1 (MQ=255) gCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTctct > 2:797112/1‑140 (MQ=255) gCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CCCTGCGAACACGCTTGGACCAATTGCCGGCCCTAACCAGGGGAGAATATTTTCCGAGTTATCAGCAAAAAAGGAAACCGCCTCTccc > 2:7092153/1‑140 (MQ=255) gCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTcc > 1:7209313/1‑140 (MQ=255) gCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACCCGCGGGGACCAATTGCCGGCCCTAACCAGGGAAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTcc > 2:5134292/1‑140 (MQ=255) cACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCa > 2:539522/1‑140 (MQ=255) cACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTCTCCGGATCATCGGCAAAACAGGAAACCGTCTCTTCCa > 1:2866185/1‑140 (MQ=255) aCTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAg < 2:527899/140‑1 (MQ=255) aCTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAg > 1:7041219/1‑140 (MQ=255) ttttttttGCGTCTATTGCCCCAAACGCCTCGCGAA‑‑CCGCC‑‑‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGCa < 1:4026712/136‑1 (MQ=255) ttGCTTTAGCGTCTAGTGCCATGAAGGCCCCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGCa < 1:3269881/140‑1 (MQ=255) ttGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGCa < 2:7504655/140‑1 (MQ=255) ttGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGCa < 1:1721799/140‑1 (MQ=255) ttGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGCa < 1:586299/140‑1 (MQ=255) cTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTC‑‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAAAATTTTCCGTATTTTCAACAAAACAGCAAACTCTCTCTTCCAGCACGcc > 2:3302998/1‑140 (MQ=255) ttAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGCACGCCt < 1:4617402/140‑1 (MQ=255) ttAGCGTATAGTGCCCTAAACGCCTCGCGAC‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGCACGCCt < 1:2737443/140‑1 (MQ=255) aGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGCACGCCTgc > 1:6767410/1‑140 (MQ=255) aGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTC‑‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTGTCCGGATTTTCACCAACACAGGAAAGCGTCGCTTCCAGCACGCCTgcg > 2:2379676/1‑140 (MQ=255) cGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CATTTCGAACGCGCGGGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTACCGGATTATCAGCAAAGCAGGAAACGGTCTCTTCCAGCACGCCTgcgc > 2:3201550/1‑140 (MQ=255) gagacaggCCATAAACGCCCCGCGAACCC‑‑CC‑‑‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGCACGCCTGCGca < 2:844053/133‑1 (MQ=255) gTCTTCTCCCATAAACCCCTCCCGGC‑‑C‑‑CCCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGCACGCCTGCGca < 2:3970238/140‑1 (MQ=255) gTCTACTGCCATAAATGCCTCGTGAT‑‑C‑‑CTGC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGCACGCCTGCGca < 1:3482587/140‑1 (MQ=255) gTCTACTGCCATAAATGCCTCGTGAT‑‑C‑‑CT‑‑‑‑CCCC‑‑CCCCGCACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGCACGCCTGCGca < 1:3201550/140‑1 (MQ=255) gTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGCACGCCTGCGca < 2:6119839/140‑1 (MQ=255) gTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGCACGCCTGCGca > 1:4465870/1‑140 (MQ=255) gTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGCACGCCTGCGca < 1:1604433/140‑1 (MQ=255) gTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGCACGCCTGCGca < 1:503112/140‑1 (MQ=255) gTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGCACGCCTGCGca < 2:5208897/140‑1 (MQ=255) gTCTACTGCCATAAAAGCCTCGTGAT‑‑C‑‑CTG‑‑‑CCCC‑‑CCCT‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGCACGCCTGCGca < 1:2634785/140‑1 (MQ=255) gTCTAATGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGCACGCCTGCGca < 2:7041219/140‑1 (MQ=255) cTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGCACGCCTGCGcaca > 1:575987/1‑140 (MQ=255) cTACTGCCATAAACGCCTCGCCAA‑‑C‑‑CTCCCCCCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGCACGCCTGCGca < 1:6865968/140‑1 (MQ=255) tACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAGAACAGGATACCATCACTTCCATCACGCCTGCGCACAg > 1:2168546/1‑140 (MQ=255) tACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGCACGCCTGCGCACAg > 1:4390107/1‑140 (MQ=255) tACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGCACGCCTGCGCACAg > 2:5860701/1‑140 (MQ=255) tACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGAATTATCAGAAAACCAGCAAACCGTCCCTTCAAGCACGCCTGCGCACAg > 2:2912771/1‑140 (MQ=255) tACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTC‑‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGCACGCCTGCGcaca < 1:5617251/138‑1 (MQ=255) tACTGCCATAAACGCCTCGCGAA‑‑C‑‑CTC‑‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGCACGCCTGCGcaca > 2:5617251/1‑138 (MQ=255) aCTGCCATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGCACGCCTGCGCACAGt > 2:1586898/1‑140 (MQ=255) ccATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGGACCACTCTCTTCGAGCAGTCCTGCGCCCAGTCCAc > 2:3482587/1‑140 (MQ=255) ccATAAACGCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGCACGCCTGCGCACAGTCCAc < 1:6729693/140‑1 (MQ=255) aTAAACGCCCCGCGAACGC‑‑CC‑‑‑‑CCCC‑‑CCC‑‑CACTTCGTACGCGCGTGGACAAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGCACGCCTGCGCACAGTCCACgc < 2:3182429/140‑1 (MQ=255) aaaCGCCTCGCGAA‑‑C‑‑CT‑‑‑‑CCCCCGCCC‑‑CACCTCGAACGGGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGCACGCCTGCGCACAGTCCACgcca < 1:3679692/140‑1 (MQ=255) gCCTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGCACGCCTGCGCACAGTCCACgccagcca > 2:5730692/1‑140 (MQ=255) cTCGCGAA‑‑C‑‑CTCCC‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGGGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGGTTATCAGCAAACCAGGAAACCGTCTCTTCCAGCACGCCTGCGGACAGCCCAAGcccgccag > 2:1057870/1‑140 (MQ=255) cTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGGAACCGTCTCTTCCAGCACGCCTGCGCACAGTCCACGCcagccagc > 1:7077364/1‑140 (MQ=255) cTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGCACGCCTGCGCACAGTCCACGCcagccagc > 1:5356452/1‑140 (MQ=255) cTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGAACGCCTGCGCACAATCCACGCcagccagc > 1:1916275/1‑140 (MQ=255) cTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCCCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGCCCCCCTGCGCACAGTCCACgccctgtctc > 1:844053/1‑133 (MQ=255) cTCGCGAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTGCGAACGCCCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAAGATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGCACGCCTGCGCACAGTCCACGCcagccagc > 2:4988093/1‑140 (MQ=255) gcgAA‑‑C‑‑CTCC‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGCACGCCTGCGCACAGTCCACGCCAGCCAGCATg > 1:6627509/1‑140 (MQ=255) || GCCGCCGAAAATTTGCTCAACACCCACGTTCGCCAGACGCTGCCGGGCAAGCTGATAAATATCCGCCAGATACTTATCACCATGCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAA‑‑C‑‑CT‑‑‑‑CCCC‑‑CCC‑‑CACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGGCGAGAATATTTTCCGGATTATCAGCAAAACAGGAAACCGTCTCTTCCAGCACGCCTGCGCACAGTCCACGCCAGCCAGCATGAG > NC_000913/2734396‑2734667 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |