| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,341,464 | (A)5→6 | coding (199/987 nt) | kdsD → | D‑arabinose 5‑phosphate isomerase KdsD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,341,459 | 1 | . | A | 96.5% | 1909.0 / 43.1 | 563 | coding (194/987 nt) | kdsD | D‑arabinose 5‑phosphate isomerase KdsD |
| Reads supporting (aligned to +/- strand): ref base . (13/7); new base A (264/279); total (277/286) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.76e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 606 total aligned reads displayed.
GTCCTGGCGATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑G‑A‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGTTACCCCACAGGATGTGGTGATTGCTATCTCTAACTCTGGTGAATCCA > NC_000913/3341320‑3341593 | gTCCTGGCGATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑g > 2:922179/1‑140 (MQ=255) ccTGGCGTTTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑G‑a‑a > 2:5880481/1‑140 (MQ=255) ccTGGCGATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑G‑a‑a > 1:56029/1‑140 (MQ=255) ggCGATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑G‑a‑aa‑aa > 2:742518/1‑140 (MQ=255) gCGATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑G‑a‑aa‑aaa > 1:6901215/1‑139 (MQ=255) gCGATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑G‑a‑aa‑aaa > 2:659935/1‑139 (MQ=255) gCGATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑G‑a‑aa‑aaa > 1:6511186/1‑139 (MQ=255) tGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑Tggcg > 1:1338601/1‑140 (MQ=255) tGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑Tggcg > 2:5393521/1‑140 (MQ=255) gAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑Tggcgg < 2:7156340/140‑1 (MQ=255) tGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACg > 1:4872207/1‑140 (MQ=255) aTGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGttt > 1:340709/1‑140 (MQ=255) gCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGc < 1:6073250/140‑1 (MQ=255) ccTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGcc < 1:5421818/140‑1 (MQ=255) ccTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCAGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGcc < 1:1796756/140‑1 (MQ=255) tGGCGGAGCTTGATCCATACATGAATCAGGATTTCACCCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAg < 1:3641385/140‑1 (MQ=255) tGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAg < 2:4661503/140‑1 (MQ=255) cctGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGAGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCATCGTTTGCCAGCACCGGTa < 2:259423/138‑1 (MQ=255) cTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATTGGGGCATAGTGGTC‑G‑AGAA‑AA‑TGGCAGCAAGGTTTGCCAGCACCGGTa > 2:2780798/1‑140 (MQ=255) cTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTa > 1:4315055/1‑140 (MQ=255) aTCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACAcc > 2:5196145/1‑140 (MQ=255) aaTACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGTGGCAACGTTTGCCAGCACCGGTACACCTTc < 1:4712/140‑1 (MQ=255) aTACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑G‑AGAA‑AA‑TGGTGGCAACGTGTGCCAGCACCGGTACACCTTCa > 2:3413870/1‑140 (MQ=255) tACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCAt > 1:4143460/1‑140 (MQ=255) aCATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCAtt > 2:7354010/1‑140 (MQ=255) aCATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCAtt > 1:1019518/1‑140 (MQ=255) aCATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑G‑A‑AA‑AAGTGGCGGCGACGCTTTCCAGCATCGGTACACCtctgtc > 1:2137142/1‑135 (MQ=255) cATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCAttt > 1:727802/1‑140 (MQ=255) cATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCAttt < 2:4130215/140‑1 (MQ=255) tcaatcaGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGATGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCAttttt > 1:4511517/1‑140 (MQ=255) caatcaGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTc > 1:1119483/1‑140 (MQ=255) caatcaGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTc > 1:6606491/1‑140 (MQ=255) caatcaGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TAGCGGCAAGGTTTGCCAGCACCAGTACACCTTCATTTTTc > 2:3067336/1‑140 (MQ=255) caatcaGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGA‑GAA‑AA‑AA‑TGGCGCCAAGGTTTGCCAGCACCAGTACACCTTCATTTTTc > 2:2042290/1‑140 (MQ=255) atcaGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGt < 2:6979271/140‑1 (MQ=255) atcaGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGt > 1:6242634/1‑140 (MQ=255) atcaGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGt > 2:4814047/1‑140 (MQ=255) atcaGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGt > 1:6734321/1‑140 (MQ=255) atcaGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGACAACGTTAGCCAGCGCCGGTACACCTTCATTTTTCGt > 1:2344784/1‑140 (MQ=255) atcaGAATTTCACGCCTGCCTGTGATAAGCTGTTCTGCTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGt < 1:1973855/140‑1 (MQ=255) tcaGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTc > 2:24738/1‑140 (MQ=255) tcaGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑G‑ATAA‑AA‑TGGCGGCAGCGTGGGCCAGCAACGGTTGACCTTCAGTTTTCGTc > 2:3670034/1‑140 (MQ=255) aaTTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATc > 2:3779419/1‑140 (MQ=255) aCGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTg < 2:7563013/140‑1 (MQ=255) gCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCcg > 1:4635667/1‑140 (MQ=255) gCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCcg < 1:261541/140‑1 (MQ=255) gCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGGTTGCCAGCCCCGATACGCCTTCATTCTTCGTACATCCTGGTGAAGCcg > 2:3273923/1‑140 (MQ=255) tgAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATc > 2:1528986/1‑123 (MQ=255) ttCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAg > 1:1429327/1‑140 (MQ=255) ttCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAg > 1:1264847/1‑140 (MQ=255) ttCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAg > 1:5086116/1‑140 (MQ=255) tCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAgg < 2:4315055/140‑1 (MQ=255) cTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGc < 2:6366614/140‑1 (MQ=255) cTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGc < 1:5870697/140‑1 (MQ=255) gtgtAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATg > 2:6007579/1‑140 (MQ=255) gtgtAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATg > 1:4930646/1‑140 (MQ=255) tgtAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCCTCCTGGTGAAGCAGCGCATGGTGATTGAGGCATgg > 2:3538563/1‑140 (MQ=255) tgtAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATgg < 2:6508354/140‑1 (MQ=255) gtAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGt < 2:5539453/140‑1 (MQ=255) gtAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGt < 2:4463867/140‑1 (MQ=255) gtAAAGGGAAAGTTGACGTCATAGGTATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGt < 1:3459487/140‑1 (MQ=255) tAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGtt > 1:1584499/1‑140 (MQ=255) tAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGtt > 2:121101/1‑140 (MQ=255) aaaGGGAAAGTTGTCGTTATGGTGATGGGAAAATCGGGGTATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGTTa < 2:2903998/140‑1 (MQ=255) aaaGGGAAAGTTGTCGTCATGGGGATGGGCAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCAGCGCATGGTGATTTAGGCATGGTTa < 1:2511557/140‑1 (MQ=255) aaaGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGTTa < 2:3904804/140‑1 (MQ=255) aaaGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGTTa < 2:5666078/140‑1 (MQ=255) aaGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGTTAc < 1:3950012/140‑1 (MQ=255) aaGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGCGGCATATTGGGCTA‑A‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGTTAc < 2:2332482/140‑1 (MQ=255) ggAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGTTAcccc < 2:4930646/140‑1 (MQ=255) gAAAGTTGTCGTCATAGGGATGCGATAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGTTACCCca < 1:3276460/140‑1 (MQ=255) aaaGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGt < 1:7322421/132‑1 (MQ=255) aaaGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGTTa < 1:6315742/134‑1 (MQ=255) aaGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGTTACCCcaca > 1:3892215/1‑140 (MQ=255) aaGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGTTACCCcaca < 2:1389497/140‑1 (MQ=255) gTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAGGCCGCGCCTGGTGATTTAGGCCTGGTTACCCCACAgg > 1:3052786/1‑140 (MQ=255) tGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGTTACCCCACAGGAt < 2:727802/140‑1 (MQ=255) tGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGTTACCCCACAGGAt < 1:767041/140‑1 (MQ=255) cgtcATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGTTAcccc > 2:6861855/1‑130 (MQ=255) cgtcATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGTTAcccc < 1:6861855/130‑1 (MQ=255) tcATGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGTTACCCCACAGGATgtggt < 1:5182184/140‑1 (MQ=255) aTGGGGATGGGAAAATCTGGGCTTATTGGGC‑C‑A‑AACAA‑TCGCGGCAACTTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGTTACCCCACAGGATGTGGTGa < 2:1955448/140‑1 (MQ=255) aTGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGTTACCCCACAGGATGTGGTGa < 2:1705027/140‑1 (MQ=255) aTGGGGATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGTTACCCCACAGGATGTGGTGa > 1:290202/1‑140 (MQ=255) ggggATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGGACACCTTCATTTTTCGTCCATCCGGGTGAAGCCGCGCATGGTGATTTAGGCATGGTTACCCCACAGGATGAGGTGAtt > 2:6287496/1‑140 (MQ=255) ggATGGGAAAATC‑GGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGTTACCCCACAGGATGTGGTGATTGCt < 1:5670351/140‑1 (MQ=255) gATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGTTACCCCACAGGATGTGGTGATTGCt < 1:596426/140‑1 (MQ=255) gATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGTTACCCCACAGGATGTGGTGATTGCt < 1:742518/140‑1 (MQ=255) gATGGGAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGTTACCCCACAGGATGTGGTGATTGCt < 1:7082777/140‑1 (MQ=255) gggAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGTTACCCCACAGGAtgt < 1:91077/127‑1 (MQ=255) gggAAAATCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGTTACCCCACAGGATGTGGTGATTGCt > 2:1330166/1‑137 (MQ=255) aaTCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGTTACCCCACAGGATGTGGTGATTGCTATCTCTaa < 2:1620604/140‑1 (MQ=255) aaTCGGGGCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGTTACCCCACAGGATGTGGTGATTGCTATCTCTaa < 2:6711387/140‑1 (MQ=255) ggCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGTTACCCCACAGGATGTGGTGATTGCTATCTCTAACTCTgg > 2:5766205/1‑140 (MQ=255) gCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGTTACCCCACAGGATGTGGTGATTGCTATCTCTAACTCTGGt < 2:5132205/140‑1 (MQ=255) gCATATTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGTTACCCCACAGGATGTGGTGATTGCTATCTCTAACTCTGGt < 1:94331/140‑1 (MQ=255) atTGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGTTACCCCACAGGATGTGGTGATTGCTATCTCTAAc < 2:1034858/130‑1 (MQ=255) ttGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGTTACCCCACAGGATGTGGTGATTGCTATCTCTAACTCTGGTGAAt < 1:5271955/139‑1 (MQ=255) ttGGGC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGGGAAGCCGCGCATGGTGATTTAGGCATGGTTACCCCACAGGATGTGGTGATTGCTATCTCTAACTCTGGTGAATc > 2:3963553/1‑140 (MQ=255) gggC‑GAA‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGTTACCCCACAAGATGTGGTGATAGCGATCTCTAACTCTGGTGAATCCa > 1:3707802/1‑140 (MQ=255) | GTCCTGGCGATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGC‑G‑A‑AA‑AA‑TGGCGGCAACGTTTGCCAGCACCGGTACACCTTCATTTTTCGTCCATCCTGGTGAAGCCGCGCATGGTGATTTAGGCATGGTTACCCCACAGGATGTGGTGATTGCTATCTCTAACTCTGGTGAATCCA > NC_000913/3341320‑3341593 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |