BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,594,132	(C)_8→9	pseudogene (3955/5422 nt)	yneO ←	AIDA‑I family autotransporter YneO

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,594,124	1	.	C	93.1%	1279.8 / 69.6	381	pseudogene (3963/5422 nt)	yneO	AIDA‑I family autotransporter YneO
Reads supporting (aligned to +/- strand): ref base . (13/13); new base C (159/192); total (174/207)
Fisher's exact test for biased strand distribution p-value = 6.87e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01

Only 100 of 426 total aligned reads displayed.

GAACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑G‑‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTCCCCCCCCA  >  NC_000913/1593985‑1594257

  aCGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑G‑‑cc                                                                                                                                      <  1:6275096/140‑1 (MQ=255)

   cGTCATCAGGCCATGGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑G‑‑ccc                                                                                                                                     <  1:430199/140‑1 (MQ=255)

        tcaGGCCATTGTTTTCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑G‑‑ccccccc‑c                                                                                                                               <  1:5768953/140‑1 (MQ=255)

         caGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑G‑‑ccccccc‑cc                                                                                                                              <  1:3823705/140‑2 (MQ=255)

          aGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑G‑‑ccccccc‑ccc                                                                                                                             <  1:1016341/140‑3 (MQ=255)

            gCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑G‑‑ccccccc‑ccagg                                                                                                                           >  1:6127475/1‑136 (MQ=255)

              cATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTCCATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCa                                                                                                                          <  2:443272/140‑1 (MQ=255)

              cATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCa                                                                                                                          <  2:6577019/140‑1 (MQ=255)

               aTTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑G‑‑CCCCCCC‑CAGGCATa                                                                                                                        <  1:3926315/140‑1 (MQ=255)

               aTTGTTTCCGGTATAGTTGCCGGTAACGGTCAGTACACTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCAt                                                                                                                         <  1:2538438/140‑1 (MQ=255)

               aTTGTTTCCGGCATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCAt                                                                                                                         <  2:5945975/140‑1 (MQ=255)

                ttGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTAGCCGCCGAAAGTCGATGCAGCGACAGCCA‑GG‑A‑‑CCCCCCCGCAGGCATa                                                                                                                        >  2:3708357/1‑140 (MQ=255)

                ttGTTTCCGGTATAGCTGCCGTCAATGGTCAGTACATCCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATa                                                                                                                        <  1:1972977/140‑1 (MQ=255)

                   tttCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACg                                                                                                                     <  1:1149537/140‑1 (MQ=255)

                   tttCCGGTATAGTTGACGTTAATGGACAGCACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACg                                                                                                                     <  1:3521851/140‑1 (MQ=255)

                        ggTATAGTTGCCGTTTACGGTCAGTCCATGCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCat                                                                                                                <  1:2016971/140‑1 (MQ=255)

                         gTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCata                                                                                                               >  1:214997/1‑140 (MQ=255)

                               ttGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGATTTAGCGACACGGAGGT‑C‑‑CCCCCCC‑CAGGCTTAACGTTAATATCAccc                                                                                                         >  2:2770690/1‑139 (MQ=255)

                                tGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTg                                                                                                        <  2:7040874/140‑1 (MQ=255)

                                             cAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACAtt                                                                                           >  2:3842053/1‑140 (MQ=255)

                                                tACATTCCCCGGTTTCCCCCCTTCGGTATACATTTGAGCCGTGCCGCCATTCTCCAGGTTGCCGCCGACAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTcc                                                                                        <  1:3353413/140‑1 (MQ=255)

                                                tACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTcc                                                                                        <  1:1831027/140‑1 (MQ=255)

                                                tACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTcc                                                                                        <  1:4483967/140‑1 (MQ=255)

                                                 aCATTCCCGGGTTTCCTCCCTTCGCTATTCTTTAGAACCCTGCCGCCACTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTccc                                                                                       <  2:3670256/140‑1 (MQ=255)

                                                 aCATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTacc                                                                                       <  1:7033890/140‑1 (MQ=255)

                                                     tCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCTTAACGTTAATATCACCGGCAGCGGTGACATTTCCCGACa                                                                                   >  2:2335074/1‑140 (MQ=255)

                                                     tCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACa                                                                                   >  1:4437461/1‑140 (MQ=255)

                                                     tCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACa                                                                                   >  1:754758/1‑140 (MQ=255)

                                                     tCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACa                                                                                   >  2:6734967/1‑140 (MQ=255)

                                                     tCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACa                                                                                   >  2:1897763/1‑140 (MQ=255)

                                                      ccccGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATGTCAACTTCAGTGGCGACATTTCCCGACAt                                                                                  >  1:3007999/1‑140 (MQ=255)

                                                      ccccGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACAt                                                                                  >  2:4997235/1‑140 (MQ=255)

                                                      ccccGGTTTCCCCCCTTAGCTATTCATTTGATCCGGGCCCCCATTCTCGAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACAt                                                                                  <  2:2009724/140‑1 (MQ=255)

                                                        ccGGTTTCCCCCCTTGGCTATCTATCTGAACCGTGCCTCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATca                                                                                <  1:2295728/140‑1 (MQ=255)

                                                          ggTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATcaca                                                                              <  2:5758335/140‑1 (MQ=255)

                                                           gTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCacac                                                                             <  2:1177617/140‑1 (MQ=255)

                                                           gTTTCCCCCCTTCGCTATTCATTTGAACCGGGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGCCACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCacac                                                                             <  2:1714047/140‑1 (MQ=255)

                                                            tttCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGTCATAACGTTCATATAAACTGCAGTGATGACATTTCCCGACATCACAcc                                                                            >  2:3244280/1‑140 (MQ=255)

                                                             ttCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCTTTCCCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCg                                                                           <  2:1430946/140‑1 (MQ=255)

                                                             ttCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCg                                                                           <  1:7386356/140‑1 (MQ=255)

                                                             ttCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCg                                                                           <  2:6505332/140‑1 (MQ=255)

                                                             ttCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCg                                                                           <  2:6206336/140‑1 (MQ=255)

                                                             tgccccccTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCg                                                                           <  2:6384351/138‑1 (MQ=255)

                                                               ccccccTTCGCTATTGATTTGAGCCCTGCCGCCATTCCCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCt                                                                         <  1:2404628/140‑1 (MQ=255)

                                                               ccccccTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCg                                                                           <  2:1074123/138‑1 (MQ=255)

                                                                cccccTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATGACCTGCAGTGGGGATATTTCCTGACATCACACCGCTg                                                                        >  1:2343481/1‑140 (MQ=255)

                                                                cccccTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTg                                                                        <  2:4136464/140‑1 (MQ=255)

                                                                  cccTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGtt                                                                      <  1:4045188/140‑1 (MQ=255)

                                                                  cccTTCGCTATTCATGTGAACCGTGCCGCAATTCTCCGGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGtt                                                                      <  1:3452288/140‑1 (MQ=255)

                                                                   ccTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTa                                                                     <  1:4676554/140‑1 (MQ=255)

                                                                   ccTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑G‑‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTAt                                                                    <  2:350214/140‑1 (MQ=255)

                                                                    ctccGCTATTCCTTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTAt                                                                    <  1:5817341/137‑1 (MQ=255)

                                                                    cTTCGCTATTCATTTGTACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTCAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTAt                                                                    <  2:4608110/140‑1 (MQ=255)

                                                                    cTTCGCTATTCATTTGATCCGTGCCGCCATTATCCAGGTAGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTAt                                                                    <  2:3007999/140‑1 (MQ=255)

                                                                    cTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGCGGTGACATTTCCCGACATCACACCGCTGTTAt                                                                    <  2:7370545/140‑1 (MQ=255)

                                                                      tCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTAATATCACCAGCAATGGAGACATTTCTCGACATCACACCGCTGTTATgg                                                                  >  2:2922275/1‑140 (MQ=255)

                                                                          tATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGatat                                                              >  2:6943191/1‑140 (MQ=255)

                                                                          tATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGatat                                                              >  1:1705477/1‑140 (MQ=255)

                                                                           aTTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATAtt                                                             <  1:320015/140‑1 (MQ=255)

                                                                            ttCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCTCCTGCAGTGGTGACATGTCCCGACATCACACCGCTGTTATGGATATTa                                                            >  2:2531706/1‑140 (MQ=255)

                                                                               aTTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAAtg                                                         >  1:4167624/1‑140 (MQ=255)

                                                                                    aaCCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTg                                                    <  1:1315901/140‑1 (MQ=255)

                                                                                    aaCCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTg                                                    >  1:6636452/1‑140 (MQ=255)

                                                                                    aaCCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTg                                                    >  2:5994943/1‑140 (MQ=255)

                                                                                     aCCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGa                                                   <  1:6565493/140‑1 (MQ=255)

                                                                                      ccGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGAc                                                  <  2:6127475/140‑1 (MQ=255)

                                                                                      ccGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGAc                                                  <  1:4944857/140‑1 (MQ=255)

                                                                                         tGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GCCCCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCAGACTTCACACCGCGGTCAGGGACATTAAGTTGTTTACtt                                                >  2:3188695/1‑140 (MQ=255)

                                                                                         tGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGATATCACACAGCTGTTATGGATAATAATGTGTTGACTTg                                               >  1:2086135/1‑140 (MQ=255)

                                                                                         tGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGAGATCACACGGCTTTTTTGGATATTAATGTGTTGACTTg                                               >  1:2711931/1‑140 (MQ=255)

                                                                                         tGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTg                                               >  2:5366054/1‑140 (MQ=255)

                                                                                         tGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTg                                               >  1:6796465/1‑140 (MQ=255)

                                                                                         tGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTg                                               >  1:5170611/1‑140 (MQ=255)

                                                                                         tGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTg                                               >  1:3735796/1‑140 (MQ=255)

                                                                                         tGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTg                                               >  2:7329369/1‑140 (MQ=255)

                                                                                         tGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTAATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTa                                                            <  2:7522401/127‑1 (MQ=255)

                                                                                         tGCCGCCATTATCCACGTTGCCGCCGATGGTGGTTTTAGCAACAGCCA‑ATCC‑‑CCCCCCC‑CAGCCATAACGTTCATATCACTTGCAGGGGTGACATTTCCCGACATCACACCGCCGTTTTGGAGATTAATGTGTTGACttt                                               >  2:1241177/1‑139 (MQ=255)

                                                                                          gccgccATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGc                                              >  2:1646028/1‑140 (MQ=255)

                                                                                          gccgccATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑G‑‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGcc                                             <  2:3894379/140‑1 (MQ=255)

                                                                                           ccgccATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGcc                                             <  2:4865068/140‑1 (MQ=255)

                                                                                           ccgccATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGcc                                             <  1:5994943/140‑1 (MQ=255)

                                                                                            cgccATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GCCCCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGcc                                             <  1:6385818/140‑1 (MQ=255)

                                                                                              ccATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCata                                          >  2:5852227/1‑140 (MQ=255)

                                                                                                cttCTCCAGATTGCCGCTGATACTGGTTTTACCGACACGTA‑GT‑GT‑CCCACCC‑CAGGCATAACGTTCATATCCCCTGCAGTGGTGACATTTCCCGACATCACCCCGCTGTTATGGATATTAATGTGTTGACTTGCCATAtt                                        <  2:2126889/139‑1 (MQ=255)

                                                                                                      cAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGc                                  <  1:1897763/140‑1 (MQ=255)

                                                                                                      cAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGc                                  <  1:5897021/140‑1 (MQ=255)

                                                                                                           tGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCat                                           <  1:1538543/126‑1 (MQ=255)

                                                                                                           tGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCat                                           >  2:1538543/1‑126 (MQ=255)

                                                                                                           tGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGt                             >  1:7341589/1‑140 (MQ=255)

                                                                                                            gccgccGATAGTGGTTTTAGCGACACGCA‑GT‑GCCCCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGt                             <  1:540322/140‑1 (MQ=255)

                                                                                                            gccgccGATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTc                            >  1:960667/1‑140 (MQ=255)

                                                                                                             ccgccgATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCg                           >  2:5276696/1‑140 (MQ=255)

                                                                                                             ccgccgATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCACTGTTATGAATATTAATGTGTTGACGTGCCTTATTAATGGCAGAGTCg                           >  2:2202009/1‑140 (MQ=255)

                                                                                                              cgccgATAGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGGTATGAATTTGTTGACTGTCCAAATTAATGGCAGAGGCgg                          >  2:2424652/1‑140 (MQ=255)

                                                                                                                     aGTGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGaa                   <  1:5697832/140‑1 (MQ=255)

                                                                                                                       tGGTTTTAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGGGACATTTCCCGACATCACACCCCTGTTATGGATATTAATGGGTTAAGTGGCCATATTTATGGTTGAGTCGGAACCGAAAg                 >  2:3458261/1‑140 (MQ=255)

                                                                                                                           tttAGCGACACGCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAt             <  2:5170611/140‑1 (MQ=255)

                                                                                                                                cGACACGCA‑GT‑G‑‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTcccc       <  1:5341875/140‑1 (MQ=255)

                                                                                                                                   cacGCA‑GT‑GCCCCCCCCC‑CAGGCATAACGCTCATATCCCCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTccccc      <  1:3687146/140‑1 (MQ=255)

                                                                                                                                      gCA‑GT‑GC‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTCCCCCCCCa  <  2:5468205/140‑1 (MQ=255)

GAACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCA‑GT‑G‑‑CCCCCCC‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTCCCCCCCCA  >  NC_000913/1593985‑1594257

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`