Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 2,857,096 Δ2,538 bp coding (4‑2541/2562 nt) mutS → DNA mismatch repair protein MutS

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 2857096 2859633 2538 590 [0] [0] 590 mutS DNA mismatch repair protein MutS

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 28570950 (0.000)588 (1.310) 149/276 0.1 100% coding (3/2562 nt) mutS DNA mismatch repair protein MutS
?NC_000913 2859634 = 0 (0.000)coding (2542/2562 nt) mutS DNA mismatch repair protein MutS

Only 100 of 590 total aligned reads displayed.

CCGCCGCTACGCAAGTGGATGGTACGCAAATGTCTTTGCTGTCAGTACCAGAAGAAACTTCGCCTGCGGTCGAAGCTCTGGAAAATCTTGATCCGGATTCACTCACCCCGCGTCAGGCGCTGGAGTGGATTTATCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCATGCCATCTACACG  >  NC_000913/2859500‑2859773
                                                                                                                                      |                                                                                                                                           
agcatcaagaactcgccgttcgcttcttcccctgaaatgattaactccggtatcatgtgcgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTg                                                                                                                                        >  1:6134874‑M2/135‑140 (MQ=255)
  catcaagaactcgccgttcgcttcttcccctgaaatgattaactccggtatcatgtgcgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGaa                                                                                                                                      <  1:4159865‑M2/8‑1 (MQ=255)
  catcaagaactcgccgttcgcttcttcccctgaaatgattaactccggtatcatgtgcgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGaa                                                                                                                                      <  2:6761721‑M2/8‑1 (MQ=255)
  catcaagaactcgccgttcgcttcttcccctgaaatgattaactccggtatcatgtgcgccttatgtgattacaacgaaaataaaaaccatcacaccccattaaatatcaaggagccggacataaccccatgCGCTTGaa                                                                                                                                      >  1:3222109‑M2/133‑140 (MQ=255)
      aagaactcgccgttcgcttcttcccctgaaatgattaactccggtatcatgtgcgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGc                                                                                                                                  <  1:3802400‑M2/12‑1 (MQ=255)
       agaactcgccgttcgcttcttcccctgaaatgattaactccggtatcatgtgcgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGcc                                                                                                                                 <  1:404765‑M2/13‑1 (MQ=255)
       agaactcgccgttcgcttcttcccctgaaatgattaactccggtatcatgtgcgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGcc                                                                                                                                 <  1:256695‑M2/13‑1 (MQ=255)
        gatctcgccgttcgcttcttcccctgaaatgattaactccggtatcatgtgcgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCt                                                                                                                                <  2:4630838‑M2/14‑1 (MQ=255)
        gaactcgccgttcgcttcttcccctgaaatgattaactccggtatcatgtgcgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCt                                                                                                                                <  1:280103‑M2/14‑1 (MQ=255)
          actcgccgttcgcttcttcccctgagatggttaactccggtatcatgtgcgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTgg                                                                                                                              <  1:3449766‑M2/16‑1 (MQ=255)
          actcgccgttcgcttattcccctgacatgcttaactccggtatcatgtgcgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTgg                                                                                                                              <  1:3136075‑M2/16‑1 (MQ=255)
           ctcgccgttcgcttcttcccctgaaatgattaactccggtatcatgtgcgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTgg                                                                                                                              >  2:4032542‑M2/124‑139 (MQ=255)
             cgccgttcgcttcttcccctgaaatgattaactccggtatcatgtgcgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGgtgt                                                                                                                           >  1:893870‑M2/122‑140 (MQ=255)
                cgttcgcttcttcccctgaaatgattaactccggtatcatgtgcgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGtaat                                                                                                                        >  1:5962824‑M2/119‑140 (MQ=255)
                  ttcgcttcttcccctgacatgattaactccgatataatgtgcgacttaagtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGtaataa                                                                                                                      <  2:2644410‑M2/24‑1 (MQ=255)
                      cttcttcccctgaaatgattaactccggtatcatgtgcgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataacccgatgCGCTTAAAGAGCCTGGTGTAATAACAAt                                                                                                                  >  2:3231787‑M2/113‑140 (MQ=255)
                       ttcttcccctgaaatgattaactccggtatcatgtgcgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAAtt                                                                                                                 <  1:3920876‑M2/29‑1 (MQ=255)
                            cccctgaaatgattaactccggtatcatgtgcgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGa                                                                                                            <  2:7082249‑M2/34‑1 (MQ=255)
                            cccctgaaatgattaactccggtatcatgtgcgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGa                                                                                                            >  1:7436600‑M2/107‑140 (MQ=255)
                            cccctgaaatgattaactccggtatcatgtgcgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGa                                                                                                            <  2:3853460‑M2/34‑1 (MQ=255)
                              cctgaaatgattaactccggtatcatgtgcgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATa                                                                                                          <  1:7123295‑M2/36‑1 (MQ=255)
                                 gaaatgattaactccggtatcatgtgcgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTc                                                                                                       >  2:4882806‑M2/102‑140 (MQ=255)
                                 gaaatgattaactccggtatcatgtgcgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCCCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTc                                                                                                       <  1:5191423‑M2/39‑1 (MQ=255)
                                   aatgattaactccggtatcatgtgcgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCtt                                                                                                     <  1:6065792‑M2/41‑1 (MQ=255)
                                        ttaactccggtatcatgtgcgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCt                                                                                                >  1:6605883‑M2/95‑140 (MQ=255)
                                            ctccggtatcatgtgcgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCg                                                                                            >  2:516787‑M2/91‑140 (MQ=255)
                                             tccggtatcatgtgcgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCgg                                                                                           <  2:688861‑M2/51‑1 (MQ=255)
                                               cggtatcatgtgcgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGa                                                                                         <  2:893870‑M2/53‑1 (MQ=255)
                                                 gtatcatgtgcgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAat                                                                                       >  2:1674469‑M2/86‑140 (MQ=255)
                                                  tatcatgtgcgccttatctgatcacaacgaatataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAata                                                                                      <  2:2104043‑M2/56‑1 (MQ=255)
                                                     catgtgcgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCgg                                                                                           >  1:1162532‑M2/82‑132 (MQ=255)
                                                      atgtgcgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTaa                                                                                  >  1:62614‑M2/81‑140 (MQ=255)
                                                         tgcgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGa                                                                               >  2:58734‑M2/78‑140 (MQ=255)
                                                         tgcgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGa                                                                               >  1:5645963‑M2/78‑140 (MQ=255)
                                                         tgcgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGa                                                                               >  1:6782440‑M2/78‑140 (MQ=255)
                                                           cgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATc                                                                                             >  2:6209861‑M2/76‑124 (MQ=255)
                                                              cttatgtgattacaacgaagataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACt                                                                          >  1:1811998‑M2/73‑140 (MQ=255)
                                                              cttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACt                                                                          >  1:1001508‑M2/73‑140 (MQ=255)
                                                                tatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGa                                                                        >  2:5762057‑M2/71‑140 (MQ=255)
                                                                tatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGa                                                                        >  2:4343208‑M2/71‑140 (MQ=255)
                                                                     gattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGaat                                                                   <  2:4814928‑M2/75‑1 (MQ=255)
                                                                     gattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGaat                                                                   <  2:6134874‑M2/75‑1 (MQ=255)
                                                                       ttacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATCACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGaataa                                                                 <  2:1807107‑M2/77‑1 (MQ=255)
                                                                         acaacgaaaataaaaacgatcataccccattcaatatcatggaaccggccataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGaataaaa                                                               <  2:2241846‑M2/79‑1 (MQ=255)
                                                                            acgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGGTATCGGGAATAGTAGCGACAAGTGACGaataaaataa                                                            >  1:2144113‑M2/59‑140 (MQ=255)
                                                                            acgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGaataaaataa                                                            >  2:4488071‑M2/59‑140 (MQ=255)
                                                                            acgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGaataaaataa                                                            >  1:6978890‑M2/59‑140 (MQ=255)
                                                                            acgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGaataaaataa                                                            >  2:3770736‑M2/59‑140 (MQ=255)
                                                                            acgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGaataaaataa                                                            >  2:1361474‑M2/59‑140 (MQ=255)
                                                                              gaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAAtaaaataaaa                                                          <  1:5848772‑M2/84‑1 (MQ=255)
                                                                               aaaataaaaaccatcactccccgtttaatattaggtaaccggacataagcccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATaaaaa                                                         <  2:2952815‑M2/85‑1 (MQ=255)
                                                                               aaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATaaaaa                                                         <  1:7228194‑M2/85‑1 (MQ=255)
                                                                                 aataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAaca                                                       <  2:6605883‑M2/87‑1 (MQ=255)
                                                                                 aataaaaaccatcacaccccatgtaatatcatggagccgtacataacctcatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAaca                                                       <  2:2847859‑M2/87‑1 (MQ=255)
                                                                                   taaaaaccatcacacccgatttgatatcaggtaaccggatataaccccctgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACAcc                                                     <  2:2752002‑M2/89‑1 (MQ=255)
                                                                                   taaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACAcc                                                     <  1:7344081‑M2/89‑1 (MQ=255)
                                                                                         ccatcacaccccattaaatatcaggcaacaggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGtat                                               <  1:3605979‑M2/95‑1 (MQ=255)
                                                                                          catcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGGATAAAATAAAAACACCCTGtata                                              >  2:426273‑M2/45‑140 (MQ=255)
                                                                                            tcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACAcc                                                     <  1:4614175‑M2/89‑1 (MQ=255)
                                                                                                accccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGa                                        <  2:1001508‑M2/102‑1 (MQ=255)
                                                                                                  cccatttaatatcagggtaccgtacataaccccattCGCCTGAAGAGCTTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGaaa                                      <  2:3177656‑M2/104‑1 (MQ=255)
                                                                                                  cccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAaca                                                       <  1:2724056‑M2/87‑1 (MQ=255)
                                                                                                    catttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGc                                    <  2:5008254‑M2/106‑1 (MQ=255)
                                                                                                     atttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACAcc                                                     >  1:1517649‑M2/34‑122 (MQ=255)
                                                                                                      tttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCtt                                  >  1:1673592‑M2/33‑140 (MQ=255)
                                                                                                       ttaatatcagggaaccgtacattaccccatgCGCTCGAAAAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTa                                 <  2:1992715‑M2/109‑1 (MQ=255)
                                                                                                            atcagggaaccggacttaaccccattCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTa                            <  1:3309199‑M2/114‑1 (MQ=255)
                                                                                                            atcagggaaccggacctaacccaattCGCGTGAAGAGTCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTa                            <  1:2426763‑M2/114‑1 (MQ=255)
                                                                                                            atcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTa                            <  2:157638‑M2/114‑1 (MQ=255)
                                                                                                            atcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTa                            >  2:5601052‑M2/27‑140 (MQ=255)
                                                                                                            atcagggaaccggacataaccccatgCGCTTGAAGAGCCCGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTa                            <  1:4307603‑M2/114‑1 (MQ=255)
                                                                                                              cagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACa                          >  1:641239‑M2/25‑140 (MQ=255)
                                                                                                                gggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAGTAATAACGCCCTGTATGATAGAAAAGCTTATTTTACAgg                        >  2:2426763‑M2/23‑140 (MQ=255)
                                                                                                                gggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTa                            <  2:3327882‑M2/114‑1 (MQ=255)
                                                                                                                gggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTa                            <  2:6057026‑M2/114‑1 (MQ=255)
                                                                                                                gggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTAc                           <  2:354329‑M2/115‑1 (MQ=255)
                                                                                                                gggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAgg                        >  2:7144319‑M2/23‑140 (MQ=255)
                                                                                                                gggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAgg                        >  2:640835‑M2/23‑140 (MQ=255)
                                                                                                                gggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAgg                        >  2:5333473‑M2/23‑140 (MQ=255)
                                                                                                                gggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAgg                        >  1:6865640‑M2/23‑140 (MQ=255)
                                                                                                                 ggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAGAAACACCGTGTGTACTAGGAAGGCTTATTTTACAggg                       >  1:3000656‑M2/22‑140 (MQ=255)
                                                                                                                 ggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAggg                       <  1:4488071‑M2/119‑1 (MQ=255)
                                                                                                                  gaaccggacataaccccatgCGCTTAAAGAGCCTGGTCTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGt                      <  1:1926837‑M2/120‑1 (MQ=255)
                                                                                                                    accggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTaa                    >  1:4239075‑M2/19‑140 (MQ=255)
                                                                                                                     ccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTaaa                   >  1:7562957‑M2/18‑140 (MQ=255)
                                                                                                                     ccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTaaa                   >  2:7242159‑M2/18‑140 (MQ=255)
                                                                                                                     ccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTaaa                   <  1:1382559‑M2/123‑1 (MQ=255)
                                                                                                                        gacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACGCTGTATAATAGAAAGGCTTATTTTACAGGGTAAAAcc                >  1:2317387‑M2/15‑140 (MQ=255)
                                                                                                                           ataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCATg             <  2:6943770‑M2/129‑1 (MQ=255)
                                                                                                                            taaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCATGc            <  2:4118065‑M2/130‑1 (MQ=255)
                                                                                                                             aaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCATGcc           <  1:5333473‑M2/131‑1 (MQ=255)
                                                                                                                                  catgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCATg             >  1:3720856‑M2/5‑133 (MQ=255)
                                                                                                                                   atgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCATg             <  1:1323878‑M2/129‑1 (MQ=255)
                                                                                                                                   atgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCATGCCATCTac     >  2:737647‑M2/4‑140 (MQ=255)
                                                                                                                                    tgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCATGCCATCTaca    >  1:4925476‑M2/3‑140 (MQ=255)
                                                                                                                                    tgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCATGCCATCTaca    >  2:7468397‑M2/3‑140 (MQ=255)
                                                                                                                                    tgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCATGCCATCTaca    >  1:5022543‑M2/3‑140 (MQ=255)
                                                                                                                                     gCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCATg             >  1:5415478‑M2/2‑130 (MQ=255)
                                                                                                                                     gCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCATg             <  2:5415478‑M2/129‑1 (MQ=255)
                                                                                                                                     gCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCATGc            <  2:1190365‑M2/130‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                           
CCGCCGCTACGCAAGTGGATGGTACGCAAATGTCTTTGCTGTCAGTACCAGAAGAAACTTCGCCTGCGGTCGAAGCTCTGGAAAATCTTGATCCGGATTCACTCACCCCGCGTCAGGCGCTGGAGTGGATTTATCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCATGCCATCTACACG  >  NC_000913/2859500‑2859773

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: