Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,536,190 T→C intergenic (+159/+424) yjhR → / ← nanS KpLE2 phage‑like element; PLD‑like domain‑containing protein YjhR/N‑acetyl‑9‑O‑acetylneuraminate esterase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,536,1900TC99.3% 1944.3 / NA 584intergenic (+159/+424)yjhR/nanSKpLE2 phage‑like element; PLD‑like domain‑containing protein YjhR/N‑acetyl‑9‑O‑acetylneuraminate esterase
Reads supporting (aligned to +/- strand):  ref base T (0/1);  major base C (170/407);  minor base G (3/1);  total (173/411)
Fisher's exact test for biased strand distribution p-value = 8.13e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 721 total aligned reads displayed.

ACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGG  >  NC_000913/4536053‑4536326
                                                                                                                                         |                                                                                                                                        
  aGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACTTAATCATTATCCATTGAATAATGCGCCTGGTATTAATGGCGGGCGCtt                                                                                                                                      >  2:2556322/1‑140 (MQ=255)
  aGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCtt                                                                                                                                      >  1:4248972/1‑140 (MQ=255)
  aGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCtt                                                                                                                                      >  1:270557/1‑140 (MQ=255)
  aGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCtt                                                                                                                                      >  1:6287198/1‑140 (MQ=255)
  aGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACATAATCATTATCCTTTGGATAATGCGGCTGGGATTAATGGCGGGCGCtt                                                                                                                                      >  2:3052709/1‑140 (MQ=255)
      gtagtaAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAg                                                                                                                                  >  1:6549871/1‑140 (MQ=255)
      gtagtaAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAg                                                                                                                                  <  1:4871338/140‑1 (MQ=255)
       tagtaAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAgg                                                                                                                                 >  1:5585787/1‑140 (MQ=255)
       tagtaAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCCGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAgg                                                                                                                                 >  2:1052947/1‑140 (MQ=255)
        agtaAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGa                                                                                                                                >  2:4348636/1‑140 (MQ=255)
         gtaAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCtttt                                                                                                                                    <  1:1871978/135‑1 (MQ=255)
         gtaAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGaa                                                                                                                               >  1:5294754/1‑140 (MQ=255)
         gtaAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGaa                                                                                                                               >  1:7488245/1‑140 (MQ=255)
         gtaAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGaa                                                                                                                               >  1:868816/1‑140 (MQ=255)
          taAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAAt                                                                                                                              >  2:5852724/1‑140 (MQ=255)
          taAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTACTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAAt                                                                                                                              <  2:6451627/140‑1 (MQ=255)
              gggCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTGATGGCGGGCGCTTTTAGGAATgaaa                                                                                                                          >  1:2130438/1‑140 (MQ=255)
              gggCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATgaaa                                                                                                                          >  1:4491076/1‑140 (MQ=255)
              gggCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATgaaa                                                                                                                          >  2:7310246/1‑140 (MQ=255)
              gggCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATgaaa                                                                                                                          >  2:5220435/1‑140 (MQ=255)
              gggCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATgaaa                                                                                                                          >  2:7041504/1‑140 (MQ=255)
               ggCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATgaaag                                                                                                                         >  1:5816927/1‑140 (MQ=255)
                 cATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTGGCATAATGAGCCTGGGATTAATGGCGGGCGCTTTTATGAATgaaagaa                                                                                                                       >  2:2228962/1‑140 (MQ=255)
                       ttACCAATGTTAAGGGGACTTTACGTTTTGTTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATgca                                                                                                                 <  1:3285604/140‑1 (MQ=255)
                       ttACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATgca                                                                                                                 <  2:1186444/140‑1 (MQ=255)
                       ttACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATgca                                                                                                                 <  2:1894496/140‑1 (MQ=255)
                       ttACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATgca                                                                                                                 <  2:4943903/140‑1 (MQ=255)
                         aCCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATgcaag                                                                                                               <  1:7310246/140‑1 (MQ=255)
                         aCCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATgcaag                                                                                                               <  2:4491076/140‑1 (MQ=255)
                         aCCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATgcaag                                                                                                               >  2:5751922/1‑140 (MQ=255)
                         aCCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAAAgcaag                                                                                                               >  2:1386511/1‑140 (MQ=255)
                         aCCAATGTTAAGGCGACTTTCCCTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATgcaag                                                                                                               <  1:3600076/140‑1 (MQ=255)
                          ccAATGTTAAGGCGATTTTCCGTTTTATTTCGAGTCGGCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATgcaagc                                                                                                              <  1:2997197/140‑1 (MQ=255)
                          ccAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATgcaagc                                                                                                              <  1:1131034/140‑1 (MQ=255)
                          ccAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATgcaagc                                                                                                              <  1:5131308/140‑1 (MQ=255)
                          ccAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATgcaagc                                                                                                              <  1:4027134/140‑1 (MQ=255)
                           cagtGTTAAGGCGACTTTCCGTATTATTGCGCGTCCCCTTTCCTGATTGTAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATgcaagca                                                                                                             <  2:2735901/137‑1 (MQ=255)
                            aaTGTTAATGCGACTTCGCGTTGTATTGCGAGTGGCCTTTCCTGATTACAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATgcaagcaa                                                                                                            <  2:3488601/140‑1 (MQ=255)
                            aaTGTTAATGCGACTTAACGTTCTATTGCGACTTGTCTTCCCTGATTACAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATgcaagcaa                                                                                                            <  2:3652039/140‑1 (MQ=255)
                            aaTGTTAAGGCGACTTTTCGTTGTATTGCGACTCGACTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATgcaagcaa                                                                                                            <  2:2681217/140‑1 (MQ=255)
                            aaTGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATgcaagcaa                                                                                                            <  2:1563649/140‑1 (MQ=255)
                            aaTGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATgcaagcaa                                                                                                            <  2:165736/140‑1 (MQ=255)
                            aaTGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATgcaagcaa                                                                                                            <  2:6271955/140‑1 (MQ=255)
                            aaTGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATgcaagcaa                                                                                                            <  1:1427460/140‑1 (MQ=255)
                            aaTGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATgcaagcaa                                                                                                            <  1:5391219/140‑1 (MQ=255)
                            aaTGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATgcaagcaa                                                                                                            <  1:4971811/140‑1 (MQ=255)
                            aaTGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATgcaagcaa                                                                                                            <  1:4574469/140‑1 (MQ=255)
                            aaTGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTAGAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATgcaagcaa                                                                                                            <  2:3220042/140‑1 (MQ=255)
                              tGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATGCAAGCaata                                                                                                          <  1:1749729/140‑1 (MQ=255)
                              tGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCAGGGATTAATGGCAGGCGCTTTTTTGGATGACAGAAAAAGCAAGCaata                                                                                                          >  2:2029428/1‑140 (MQ=255)
                               gTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATgcaagcaa                                                                                                            <  2:5663128/137‑1 (MQ=255)
                               gTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATGCAAGCaataa                                                                                                         <  1:6617329/140‑1 (MQ=255)
                               gTTAAGGCGACTTTCCGGTTTAATGCGAGTCGCCTTTCCTGATTATAAGTCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATGCAAGCaataa                                                                                                         <  2:3162308/140‑1 (MQ=255)
                                 tAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATGCAAGCAataata                                                                                                       <  1:3810119/140‑1 (MQ=255)
                                 tAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGATTTTAGGAATGAAAGAAAATGCAAGCAataata                                                                                                       <  2:4001841/140‑1 (MQ=255)
                                       gACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATAtaataa                                                                                                 <  2:6780635/140‑1 (MQ=255)
                                       gACTTTCCGTTTTATAGCGAGTTGCCTTTACTGATTAAAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATAtaataa                                                                                                 <  1:2421754/140‑1 (MQ=255)
                                        aCTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTTGGAATGAAAGAAAAAGCAAGCAATaataaaataaa                                                                                                >  2:597011/1‑139 (MQ=255)
                                        aCTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTTGGAATGAAAAAAAAAGCAAGCAaaaatataatctt                                                                                                >  2:5437990/1‑137 (MQ=255)
                                        aCTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCCTTTTGGAATGAAAAAAAATGCAAACAATAATAtaataaa                                                                                                >  2:828444/1‑139 (MQ=255)
                                        aCTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTGTGGAATGGAAGGAAAAGCAAGGAATAATATAATAATg                                                                                               >  1:2281920/1‑140 (MQ=255)
                                          tttCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTCTGAATGAAAGACAAGGCCAGCTAAAATATAATAAAgg                                                                                              >  1:3209457/1‑140 (MQ=255)
                                          tttCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATGCAAGCAAtaatataata                                                                                                  <  2:1804200/136‑1 (MQ=255)
                                           ttCCGTTTTATTGCGGGTCGCCTTTACTGATTATAAAACTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGc                                                                                             <  1:2803082/140‑1 (MQ=255)
                                           ttCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGc                                                                                             <  2:6505271/140‑1 (MQ=255)
                                                  ttATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTTGGAATGAAAAAAAATGCAAACAAAAATATAAAAAAGGCCTAAttt                                                                                      >  1:7232839/1‑140 (MQ=255)
                                                   tATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGCTTCTTTGAATGGAAGAAAAAGCAAGCAAAAATAAAAAAAAAGCCTAAtttt                                                                                     >  2:2904034/1‑139 (MQ=255)
                                                    aTTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCt                                                                                    <  1:310598/140‑1 (MQ=255)
                                                    aTTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCt                                                                                    <  1:1018965/140‑1 (MQ=255)
                                                    aTTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCt                                                                                    <  1:388888/140‑1 (MQ=255)
                                                         gAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGaa                                                                               <  1:1280065/140‑1 (MQ=255)
                                                         gAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGaa                                                                               <  1:5714178/140‑1 (MQ=255)
                                                         gAGTCGCCTTTCCTGATCATAAATCTTATTGTTGATCTAGTCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGaa                                                                               <  2:3337956/140‑1 (MQ=255)
                                                           gTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAAca                                                                             <  1:4394963/140‑1 (MQ=255)
                                                             cGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAAcatc                                                                           <  2:6617837/140‑1 (MQ=255)
                                                               ccTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAAcatcat                                                                         <  2:6103082/140‑1 (MQ=255)
                                                                cTTTCCTGATTATAAATCTTATTGTTTACCTCATCTTTTCCCTTTGCACAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCAtt                                                                        <  2:2130438/140‑1 (MQ=255)
                                                                cTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCAtt                                                                        <  2:7216702/140‑1 (MQ=255)
                                                                 tttCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTa                                                                       <  1:7190367/140‑1 (MQ=255)
                                                                     cTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCa                                                                   <  2:7485094/140‑1 (MQ=255)
                                                                                    aTTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTTACAAAGAAAGAAAAATAAAGAAATAATATAATAATGGTCTAATTTTTTTTAAAATAATTTAGCAAAAATTCATAGTCTa                                                    >  2:4094788/1‑140 (MQ=255)
                                                                                    aTTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTa                                                    <  2:5092741/140‑1 (MQ=255)
                                                                                      tGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTAtt                                                  <  1:5930262/140‑1 (MQ=255)
                                                                                          tACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGcc                                              >  1:607508/1‑140 (MQ=255)
                                                                                          tACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGcc                                              >  1:7049079/1‑140 (MQ=255)
                                                                                            ccTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAAAAATGGCCTAATTTCTTTGAACATCAGTAATCAGATCATCGTCGTCTATTTGCCAg                                            >  1:3557172/1‑140 (MQ=255)
                                                                                                aTCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTTGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCCTTAAGCATATCTTCATCGTCCATTTGCCCGAATc                                        >  1:2473915/1‑140 (MQ=255)
                                                                                                             gCATAATGCGCCTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAg                                            >  2:173440/1‑123 (MQ=255)
                                                                                                                   tGCGCCTGGGATTAATGGCGGGCGCTTTTTGGAATGAAAAAAAAAGCAAGCAATAAAATAATAAAGGCCTAATTTTTTTGAACATCATTAAACATATCATCATCGTCTATTTTCCAGAATCCGTCGACTTATAATCGccc                     >  2:3775759/1‑139 (MQ=255)
                                                                                                                      gcCTGGGATTAATGGCGGGCGCTTTTTGGAATGAAAGAAAAAGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGaa                  >  2:475639/1‑140 (MQ=255)
                                                                                                                       ccTGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAAc                 <  1:2556322/140‑1 (MQ=255)
                                                                                                                         tGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACgg               <  2:5334073/140‑1 (MQ=255)
                                                                                                                         tGGGATTAATGGCGGGCGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACgg               <  1:6331470/140‑1 (MQ=255)
                                                                                                                         tGGGATTAATGGCGGGCGCTTTCAGGAATGAAAGAAAATGCAAGCAATGATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACgg               <  2:2473915/140‑1 (MQ=255)
                                                                                                                         tGGGATTAATGGCGGGCCCTTTAAGGAATGAAAGAAAATACAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACgg               <  2:2393669/140‑1 (MQ=255)
                                                                                                                         tGGGATTAATGGCGGCCGCTTTCAGCAATGAAAGAAATTGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACgg               <  1:3381685/140‑1 (MQ=255)
                                                                                                                              ttAATGGCGGGCGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCatat          <  2:3875678/140‑1 (MQ=255)
                                                                                                                                   ggcgggcgCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGa     <  1:1638601/140‑1 (MQ=255)
                                                                                                                                   ggcgggcgCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGa     <  1:6782184/140‑1 (MQ=255)
                                                                                                                                   ggcgggcgCTTTTAGCAATGAACGACAATCCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGa     <  1:2007698/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                        
ACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGG  >  NC_000913/4536053‑4536326

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: