| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,673,662 | A→G | intergenic (‑161/‑251) | mdtJ ← / → tqsA | multidrug/spermidine efflux pump membrane subunit MdtJ/autoinducer 2 exporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,673,662 | 0 | A | G | 99.8% | 1830.5 / NA | 502 | intergenic (‑161/‑251) | mdtJ/tqsA | multidrug/spermidine efflux pump membrane subunit MdtJ/autoinducer 2 exporter |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (184/316); total (184/318) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
Only 100 of 512 total aligned reads displayed.
ATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATCGCGGATGATAATTGTCCTCGGTAGTTGAACACGCCTGATTTGTATCATAGCT > NC_000913/1673525‑1673798 | attTTAATTTTCGCTTAATTCAACGAAACCAAAGTAAGGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCg < 1:3410983/140‑1 (MQ=255) ttAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAg > 1:4397814/1‑140 (MQ=255) ttAATTTTCGCTTAAGTCAGCGTAAGCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAg < 1:3574036/140‑1 (MQ=255) tAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGa < 1:648675/140‑1 (MQ=255) tAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGa < 2:5871465/140‑1 (MQ=255) tAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGa < 1:4756813/140‑1 (MQ=255) aTTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATg < 2:6401029/140‑1 (MQ=255) ttttCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATgg < 2:7038568/140‑1 (MQ=255) ttCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGt < 1:7058919/140‑1 (MQ=255) cGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTaa > 1:6549818/1‑140 (MQ=255) cGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTaa < 1:5059610/140‑1 (MQ=255) cGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCAACGAGCAGGATAGTTGATGAGGTGCGAAGATGGGTaa > 1:2060615/1‑140 (MQ=255) ttAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATg < 1:7404539/140‑1 (MQ=255) aTTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCACACCTACGAGCATGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAg > 2:2276001/1‑140 (MQ=255) aTTCAGCGAAACC‑AAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGa < 2:5478658/140‑1 (MQ=255) ttCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGa < 2:5125477/140‑1 (MQ=255) gCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTACTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTaa > 1:1848363/1‑129 (MQ=255) cGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATa < 1:4842391/140‑1 (MQ=255) cGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATa < 1:5864743/140‑1 (MQ=255) cGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATa < 2:799003/140‑1 (MQ=255) cGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATa < 2:5768594/140‑1 (MQ=255) ccAAAGTAAAGTGGTCATGCCCCGCGCATAGCGCACGCTATGGCAGAAAAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTc < 2:2850935/140‑1 (MQ=255) cAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTcc < 2:1842577/140‑1 (MQ=255) cAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTcc < 2:4710061/140‑1 (MQ=255) cAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCACCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTcc < 2:1205860/140‑1 (MQ=255) agtaaagtGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGa < 2:5659604/140‑1 (MQ=255) taaagtGGTCAAGCCCCGCGCATAGCGCAAGATTTCGCATAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAAc < 2:2775003/140‑1 (MQ=255) agtGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACaaa < 2:5318804/140‑1 (MQ=255) agtGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACaaa < 2:7238580/140‑1 (MQ=255) agtGGTCAAGCCCCGAGCATAGTGCCAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACaaa < 1:2496659/140‑1 (MQ=255) gtGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACaaa > 1:5704931/1‑139 (MQ=255) gTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAATGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGt > 2:4540413/1‑140 (MQ=255) gTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAGGATGGGTGAATGTAGAAAATAGCGTCCTGAACAAATTGt > 2:2129225/1‑140 (MQ=255) gTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGt < 2:1566260/140‑1 (MQ=255) gTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGt > 2:6500514/1‑140 (MQ=255) gTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGt > 2:1151025/1‑140 (MQ=255) ttaaGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTc < 2:4203068/138‑1 (MQ=255) tCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGGGGTGCGAATATGGGTAAATGTAGAACATAACGTCCTGAACAAATTGTc > 2:2874612/1‑140 (MQ=255) tCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTc > 2:752553/1‑140 (MQ=255) aaGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCa < 1:6428573/140‑1 (MQ=255) aaGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCa < 2:195134/140‑1 (MQ=255) aaGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCa < 1:1000059/140‑1 (MQ=255) aaGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGAAGAGAATAACGTCCTGAACAAATTGTCCa > 1:3272361/1‑140 (MQ=255) aaGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGATGCGAAGAGGGGGAAATCTAGAAAAGAACGCTCTGAACAAATTGTCCa > 2:3521427/1‑140 (MQ=255) aGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCGGAACAAATTGTCCat < 1:5176254/140‑1 (MQ=255) ccccGCGCATAGCGCAAGCTTTCGCAGAAAAAAGGACAAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCat‑‑‑‑‑‑‑‑aa < 1:3455404/140‑1 (MQ=255) ccGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCat‑‑‑‑‑‑‑‑aata < 1:1749977/140‑1 (MQ=255) gcgcATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATAtt > 1:7177105/1‑140 (MQ=255) gcgcATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAAAAACGTCATGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATAtt > 1:2805528/1‑140 (MQ=255) cgcATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTa > 2:6859673/1‑140 (MQ=255) cgcATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTa > 2:4920841/1‑140 (MQ=255) cgcATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTa > 1:7518137/1‑140 (MQ=255) cATAGCGCAAGCTTTTGCAGAAAAAGGGACTAAAGCGAGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACa < 1:2978718/140‑1 (MQ=255) tAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAAt > 2:7467819/1‑140 (MQ=255) cgcAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTAt > 1:6241587/1‑140 (MQ=255) cgcAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTAt < 2:6241587/140‑1 (MQ=255) aaGCTTTGGCAGAAGCAAGGACCAATGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCg < 1:2144790/140‑1 (MQ=255) aaGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCg < 1:1557740/140‑1 (MQ=255) aGCTTTGGCAGAAGAAATGACTGAAGCGCGTGGCGCCAGCGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGc < 2:2367362/140‑1 (MQ=255) aGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGc < 1:286637/140‑1 (MQ=255) aGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAAGTGACCAT‑‑‑‑‑‑‑‑AAGATTACAATTATCCGc > 1:3514743/1‑140 (MQ=255) gaagaaAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCtt < 1:840855/140‑1 (MQ=255) cTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATcg < 1:4139864/140‑1 (MQ=255) cTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATcg < 1:2367354/140‑1 (MQ=255) cTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATcg < 1:495392/140‑1 (MQ=255) tAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATcgc > 2:3856300/1‑140 (MQ=255) aaaGCGCGTTGCGCCCGTGCTGCTCCCCTCCGAGCAACATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATcgcg < 1:1964007/140‑1 (MQ=255) aGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCGAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATCGCGga > 1:2590767/1‑140 (MQ=255) aGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATcgcg > 2:7154300/1‑138 (MQ=255) cgcgTTGCGCCAGTGCTGTTCACCTACGAACAAGATAGTGGAGGGGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATCGCGgatg > 1:4256061/1‑140 (MQ=255) cgTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCTAT‑‑‑‑‑‑‑‑AATATTGCAAGTATACGCAGTGTTGCTTCTCGTCATCGCGgatgat > 2:3087093/1‑140 (MQ=255) cgTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCATAATATTACAATATTACAATTATCCGCAGTGTTGCTTCTCGTCATcg > 2:5026938/1‑140 (MQ=255) gcgcCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATCGCGGATGATAAtt < 1:4540413/140‑1 (MQ=255) cgcCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATCGCGGATGATAATTg < 1:615788/140‑1 (MQ=255) ccAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATCGCGGATGATAATTGTc < 1:1174571/140‑1 (MQ=255) ccAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATCGCGGATGATAATTGTc < 1:7276052/140‑1 (MQ=255) gctgatCACCTACGAGCGAGATGGTGGATGAGGTGCGAAGATGGGTAACTGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATCGCGGATGATAATTGTCCTCgg < 2:3181599/140‑1 (MQ=255) ctgctCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAGATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATCGCGGATGATAATTGTc < 2:3969619/134‑1 (MQ=255) ctgctCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAGATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATCGCGGATGATAATTGTc > 1:3969619/1‑134 (MQ=255) ctgctCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATCGCGGATGATAATTGTCCTCGGt > 2:6113223/1‑140 (MQ=255) gctCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATCGCGGATGATAATTGTCCTCGGTAg > 1:5337202/1‑140 (MQ=255) gctCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATCGCGGATGATAATTGTCCTCGGTAg < 1:6855249/140‑1 (MQ=255) gctCACCTACGAGCAAGATAGTAGATGAGCTGCGAAGTTGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATCGCGGATGATAATTGTCCTCGGTAg < 1:2251995/140‑1 (MQ=255) ctCACCTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATCGCGGATGATaa < 1:5587712/126‑1 (MQ=255) ccTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATCGCGGATGATAATTGTCCTCGGTAGTTGaa < 2:1753115/140‑1 (MQ=255) ccTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATCGCGGATGATAATTGTCCTCGGTAGTTGaa < 2:202484/140‑1 (MQ=255) cTACGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATCGCGGATGATAATTGTCCTCGGTAGTTGAac > 2:4127493/1‑140 (MQ=255) cGAGCAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATCGCGGATGATAATTGTCCTCGGTAGTTGAACACg > 2:4344218/1‑140 (MQ=255) gAGCAAGATAGTGGATGGGGTGCGAAGATGGTTAAATGTTGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATCGCGGATGATAATTGTCCTCGGTAGTTGAACACGc < 2:2519945/140‑1 (MQ=255) cAAGATAGTGGATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATCGCGGATGATAATTGTCCTCGGTAGTTGAACACGCCTg > 2:369790/1‑140 (MQ=255) aGATAGTGGATGAGGTGGGAAGGTGGGTAAAAGTATAAACTAACGTCCGGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATCGCGGATGATAATTGTCCTCGGTAGTTGAACACGCCTGAt < 2:2614450/140‑1 (MQ=255) aGATAGTGAATGAGGTAGGAAGATGGGTAAATGGAGAAACTAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATCGCGGATGATAATTGTCCTCGGTAGTTGAACACGCCTGAt < 2:3341411/140‑1 (MQ=255) gATGAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATCGCGGATGATAATTGTCCTCGGTAGTTGAACACGCCTGATTTGTATCa < 1:369790/140‑1 (MQ=255) gATGAGGTGCGAAGAGGGGTAAGTGCAGACAATAACGCCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATCGCGGATGATAATTGTCCTCGGTAGTTGAACACGCCTGATTTGTATCa < 1:2684425/140‑1 (MQ=255) gAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCCGTGTTGCTTCTCGTCATCGCGGATGATAATTGTCCTCGGTAGTTGAATACGCCTGATTTGTATCATaa > 2:4838241/1‑139 (MQ=255) gAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATCGCGGATGATAATTGTCCTCGGTAGTTGAACACGCCTGATTTGTATCATAg > 1:1307807/1‑140 (MQ=255) gAGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATCGAGGATGATAATTGCCCTGGGTAGTTGTACACGCCTGATTTGTATCATAg > 2:2238094/1‑140 (MQ=255) aGGTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATCGCGGATGATAATTGTCCTCGGTAGTTGAACACGCCTGATTTGTATCATAGc > 1:6988878/1‑140 (MQ=255) ggTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATCGCGGATGATAATTGTCCTCGGTAGTTGAACACGCCTGATTTGTATCATAGCt > 2:6635871/1‑140 (MQ=255) ggTGCGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATCGCGGATGATAATTGTCCTCGGTAGTTGAACACGCCTGATTTGTATCATAGCt > 2:131153/1‑140 (MQ=255) | ATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGGTAAATGTAGAAAATAACGTCCTGAACAAATTGTCCAT‑‑‑‑‑‑‑‑AATATTACAATTATCCGCAGTGTTGCTTCTCGTCATCGCGGATGATAATTGTCCTCGGTAGTTGAACACGCCTGATTTGTATCATAGCT > NC_000913/1673525‑1673798 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |