| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,565,696 | (A)7→6 | coding (38/2400 nt) | dosP ← | oxygen‑sensing c‑di‑GMP phosphodiesterase DosP |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,565,690 | 0 | A | . | 96.5% | 110.7 / ‑2.8 | 29 | coding (44/2400 nt) | dosP | oxygen‑sensing c‑di‑GMP phosphodiesterase DosP |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base . (13/15); total (14/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.83e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATCAGCATATCAATGTTATTGCCAATGACTTCTTCACGTTTGTATCCCCAGAGCTTCTCTGCGGCGGGGTTGAAAAACATCACTTCATCATTTTCGTTAATTAACACCGCACCCATCATATTTTGCTCAAGGGCGGGGAAAAAAATGCCATCGGCGGCATTATCCGCATCGGTTAGCTTCATGATTACCTCTGCATCCTGGCGCATCTAAAGACTGGCTTTCCAGAGTTCAACACGGTTTCTACCTCGTCTTTTGGCGATATACAGAGCTTCAT > NC_000913/1565552‑1565825 | aTCAGCATATCAATGTTATTGCCAATGACTTCTTCACGTTTGTATCCCCAGAGCTTCTCTGCGGCGGGGTTGAAAAACATCACTTCATCATTTTCGTTAATTAACACCGCACCCATCATATTTTGCTCAAGGGCGGGGaa < 1:98396/140‑1 (MQ=255) aGCATATCAATGTTATTGCCAATGACTTCTTCACGTTTGTATCCCCAGAGCTTCTCTGCGGCGGGGTTGAAAAACATCACTTCATCATTTTCGTTAATTAGCACCGCACCCATCATATTTTGCTCAAGGGCGGGGaaaaa < 2:507487/140‑1 (MQ=255) tCAATGTTATTGCCAATGACTTCTTCACGTTTGTATCCCCAGAGCTTCTCTGCGGCGGGGTTGAAAAACATCACTTCATCATTTTCGTTAATTAACACCGCACCCATCATATTTTGCTCAAGGGCGGGG‑AAAAAATGCCa > 1:509622/1‑140 (MQ=255) tCAATGTTATTGCCAATGACTTCTTCACGTTTGTATCCCCAGAGCTTCTCTGCGGCGGGGTTGAAAAACATCACTTCATCATTTTCGTTAATTAACACCGCAACCATCATATTTAGCGCAAGGGCGGGG‑AAAAAATGCCa > 1:225819/1‑140 (MQ=255) ttATTGCCAATGACTTCTTCACGTTTGTATCCCCAGAGCTTCTCTGCGGCGGGGTTGAAAAACATCACTTCATCATTTTCGTTAATTAACACCGCACCCATCATATTTTGCTCAAGGGCGGGG‑AAAAAATGCCATcggcg > 1:556260/1‑140 (MQ=255) ttATTGCCAATGACTTCTTCACGTTTGTATCCCCAGAGCTTCTCTGCGGCGGGGTTGAAAAAAATCACTTCATCATTTTTGTTAATTAAGACCTCACCCATCATATTTTTTTCCAAGGCGGGGAAAAAAA‑GCCATcggcg > 2:156369/1‑140 (MQ=255) gCCAATGACTTCTTCACGTTTGTATCCCCAGAGCTTCTCTGCGGCGGGGTTGAAAAAAATCACTTCATCATTTTTGTTAATTAACACCGCACCCATCATATTTTTCTCAAAGGCGGGGAAAAAAA‑GCCATCGGCGGCAtt > 2:130184/1‑140 (MQ=255) aaTGACTTCTTCACGTTTGTATCCCCAGAGCTTCTCTGCGGCGGGGGTGAAAAACATCACTTCATCATTTTTGTTAATTAACACCGCACCCATCATATTTTTCTCAAAGGCGGGG‑GAAAAATACCATCGGGGGCAttttt > 2:142568/1‑137 (MQ=255) tGACTTCTTCACGTTTGTATCCCCAGAGCTTCTCTGCGGCGGGGGTGGAAAACATCACTTCCTCATTTTCGTTAATTAACACCGCACCCCTCATATTTTTCTCAAAGGCGGGG‑GAAAAATGTCATCTGCGGGATTATccc > 2:599658/1‑139 (MQ=255) tGACTTCTTCACGTTTGTATCCCCAGAGCTTCTCTGCGGCGGGGGTGAAAAACATCACTTCATCATTTTCGTTAATTAACACCGCACCCATCATATTTTGCTCAAGGGCGGGG‑AAAAAATGCCATCGGCGGCATTATCCg > 1:624124/1‑140 (MQ=255) tcACGTTTGTATCCCCAGAGCTTCTCTGCGGCGGGGTTGAAAAACATCACTTCATCATTTTCGTTAATTAACACCGCACCCATCATATTTTGCTCAAGGGCGGGG‑AAAAAATGCCATCGGCGGCATTATCCGCATCGGtt < 2:47941/140‑1 (MQ=255) gTTTGTATCCCCAGAGCTTCTCTGCGGCGGGGTTGAAAAACATCACTTCATCATTTTCGTTAATTAACACCGCACCCATCATATTTTGCTCAAGGGCGGGG‑AAAAAATGCCATCGGCGGCATTATCCGCATCGGTTAGCt < 2:627245/140‑1 (MQ=255) ttGTATCCCCAGAGCTTCTCTGCGGCGGGGTTGAAAAACATCACTTCATCATTTTCGTTAATTAACACCGCACCCATCATATTTTGCTCAAGGGCGGGG‑AAAAAATGCCATCGGCGGCATTATCCGCATCGGTTAGCTTc < 1:130184/140‑1 (MQ=255) tATCCCCAGAGCTTCTCTGCGGCGGGGTTGAAAAAAATCACTTCATCATTTTCGTTAGTTTACACCGCACCCCTCATATTTTGCTCCAAGG‑GGGGGGAAAGATGCCTTAGGCGGGATTTTCCCACTTGGTTAGCTTccta > 2:312126/1‑137 (MQ=255) agCTTCTCTGCGGCGGGGTTGAAAAACATCACTTCATCATTTTCGTTAATTAACACCGCACCCATCATATTTTGCTCAAGGGCGGGG‑AAAAAATGCCATCGGCGGCATTATCCGCATCGGTTAGCTTCATGATTACctct < 2:624124/140‑1 (MQ=255) agCTTCTCTGCGGCGGGGTTGAAAAACATCACTTCATCATTTTCGTTAATTAACACCGCACCCATCATATTTTGCTCAAGGGCGGGG‑AAAAAATGCCATCGGCGGCATTATCCGCATCGGTTAGCTTCATGATTACctct < 2:505676/140‑1 (MQ=255) gcggcgGGGTTGAAAAACATCACTTCATCATTTTCGTTAATTAACACCGCACCCATCATATTTTGCTCAAGGGCGGGG‑AAAAAATGCCATCGGCGGCATTATCCGCATCGGTTAGCTTCATGATTACCTCTGCATCCTgg < 1:115317/140‑1 (MQ=255) gcggcgGGGTTGAAAAACATCACTTCATCATTTTCGTTAATTAACACCGCACCCATCATATTTTGCTCAAGGGCGGGG‑AAAAAATGCCATCGGCGGCATTATCCGCATCGGTTAGCTTCATGATTACCTCTGCATCCTgg < 2:556260/140‑1 (MQ=255) gcggcgGGGTTCAAACACATCATTTCATCTTTTTCGTTAATTAACACCGCACCCATCATATTTTGCTCAAGGGCGGGG‑AAAAAATGCCATCGGCGGCATTATCCGCATCGGTTAGCTTCATGATTACCTCTGCATCCTgg < 1:174221/140‑1 (MQ=255) cggcggGGTTTAAAAAAAACACTTCATTATTTTCGTTTATTAACACCGCACCCATCATATTTTTCTCAAAGGCGGGGGAAAAAA‑GCCATCCGCGGCATTTTCCCCATCGGGTAGCTTTATTATTACCCCTGCATCCCggg > 2:487381/1‑139 (MQ=255) ggcggGGTTGAAAAACATCACTGCAGCATTTTCGTTACTTAACACCGCACCCATCATATTTTGCTCAAGGGCGGGG‑AAAAAATGCCATCGGCGGCATTATCCGCATCGGTTAGCTTCATGATTACCTCTGCATCCTGgcg < 1:312126/140‑1 (MQ=255) cATCGCTTCATCATTTTCGTTAATTAACACCGCACCCATCATATTTTGCTCAAGGGCGGGG‑AAAAAATGCCATCGGCGGCATTATCCGCATCGGTTAGCTTCATGATTACCTCTGCATCCTGGCGCATCTAAAGACTGGc > 2:439770/1‑140 (MQ=255) ttCATCATTTTCGTTAATTAACACCGCACCCATCATATTTTGCTCAAGGGCGGGG‑AAAAAATGCCATCGGCGGCATTATCCGCATCGGTTAGCTTCATGATTACCTCTGCATCCTGGCGCATCTAAAGACTGGCTTTCCa < 2:99967/140‑1 (MQ=255) catTTTCGTTAATTAACACCGCACCCATCATATTTTGCTCAAGGGCGGGG‑AAAAAATGCCATCGGCGGCATTATCCGCATCGGTTAGCTTCATGATTACCTCTGCATCCTGGCGCATCTAAAGACTGGCTTTCCAGAGtt > 1:63126/1‑140 (MQ=255) tCGTTAATTAACACCGCACCCATCATATTTTGCTCAAGGGCGGGG‑AAAAAATGCCATCGGCGGCATTATCCGCATCGGTTAGCTTCATGATTACCTCTGCATCCTGGCGCATCTAAAGACTGGCTTTCCAGAGTTCAaca < 2:100615/140‑1 (MQ=255) tCGTTAATTAACACCGCACCCATCATATTTTGCTCAAGGGCGGGG‑AAAAAATGCCATCGGCGGCATTATCCGCATCGGTTAGCTTCATGATTACCTCTGCATCCTGGCGCATCTAAAGACTGGCTTTCCAGAGTTCAaca > 1:503989/1‑140 (MQ=255) cACCCATCATATTTTGCTCAAGGGCGGGG‑ACAAAATGCCATCGGCGGCATTATCCGCATCGGTTAGCTTCATGATTACCTCTGCATCCTGGCGCATCTAAAGACTGGCTTTCCAGAGTTCAACACGGTTTCTACCTCGTc > 2:613238/1‑140 (MQ=255) cACCCATCATATTTTGCTCAAGGGCGGGG‑AAAAAATGCCATCGGCGGCATTATCCGCATCGGTTAGCTTCATGATTACCTCTGCATCCTGGCGCATCTAATGACAGGCTTTCCAGAGATCAACACGGGTTCTACCTCGTc > 2:253780/1‑140 (MQ=255) cACCCATCATATTTTGCTCAAGGGCGGGG‑AAAAAATGCCATCGGCGGCATTATCCGCATCGGTTAGCTTCATGATTACCTCTGCATCCTGGCGCATCTAAAGCCTGGCTTACCATAGCTCAACATGGTTTCTACCTCGTc > 1:308492/1‑140 (MQ=255) cACCCATCATATTTTGCTCAAGGGCGGGG‑AAAAAATGCCATCGGCGGCATTATCCGCATCGGTTAGCTTCATGATTACCTCTGCATCCTGGCGCATCTAAAGACTGGCTTTCCAGAGTTCAACACGGTTTCTACCTCGTc > 1:423781/1‑140 (MQ=255) aCCCATCATATTTTGCTCAAGGGCGGGG‑AAAAAATGCCATCGGCGGCATTATCCGCATCGGTTAGCTTCATGATTACCTCTGCATCCTGGCGCATCTAAAGACTGGCTTTCCAGAGTTCAACACGGTTTCTACCTCGTCt > 2:644495/1‑140 (MQ=255) ccATCATATTTTGCTCAAGGGCGGGG‑AAAAAATGCCATCGGCGGCATTATCCGCATCGGTTAGCTTCATGATTACCTCTGCATCCTGGCGCATCTAAAGACTGGCTTTCCAGAGTTCAACACGGTTTCTACCTCGTCttt < 2:509622/140‑1 (MQ=255) ccATCATATTTTGCTCAAGGGCGGGG‑AAAAAATGCCATCGGCGGCATTATCCGCATCGGTTAGCTTCATGATTACCTCTGCATCCTGGCGCATCTAAAGACTGGCTTTCCAGAGTTCAACACGGTTTCTACCTCGTCttt < 1:142568/140‑1 (MQ=255) atatTTTGCTCAAGGGCGGGG‑AATAAATGCCATCGGCGGCATTATCCGCATCGGTTAGCTTCATGATTACCTCTGCATCCTGGCGCATCTAAAGACTGGCTTTCCAGAGTTCAACACGGTTTCTACCTCGTCTTTTGGCg < 1:506571/140‑1 (MQ=255) ttGCTCAAGGGCGGGG‑AAAAAATGCCATCGGCGGCATTATCCGCATCGGTTAGCTTCATGATTACCTCTGCATCCTGGCGCATCTAAAGACTGGCTTTCCAGAGTTCAACACGGTTTCTACCTCGTCTTTTGGCGAtata < 1:644495/140‑1 (MQ=255) gggCGGGG‑AAAAAATGCCATCGGCGGCATTATCCGCATCGGTTAGCTTCATGATTACCTCTGCATCCTGGCGCATCTAAAGACTGGCTTTCGAGAGTTCATCACGGTTACTACCTCGTCTTTTGGCGATATACAGAGCtt > 2:195592/1‑140 (MQ=255) cggggAAAAAATGCCATCGGCGGCATTATCCGCATCGGTTAGCTTCTTGATTACCTCTGCATCCTGGCGCATCTAAAGACTGGCTTTCCAGAGTTCAACACGGTTTCTACCTCGTCTTTTGGCGATATACAGAGCTTCAt > 2:334011/2‑140 (MQ=255) | ATCAGCATATCAATGTTATTGCCAATGACTTCTTCACGTTTGTATCCCCAGAGCTTCTCTGCGGCGGGGTTGAAAAACATCACTTCATCATTTTCGTTAATTAACACCGCACCCATCATATTTTGCTCAAGGGCGGGGAAAAAAATGCCATCGGCGGCATTATCCGCATCGGTTAGCTTCATGATTACCTCTGCATCCTGGCGCATCTAAAGACTGGCTTTCCAGAGTTCAACACGGTTTCTACCTCGTCTTTTGGCGATATACAGAGCTTCAT > NC_000913/1565552‑1565825 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |