| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,770,856 | (T)6→5 | coding (242/357 nt) | ydiL → | DUF1870 domain‑containing protein YdiL |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,770,851 | 0 | T | . | 97.7% | 171.1 / ‑1.8 | 43 | coding (237/357 nt) | ydiL | DUF1870 domain‑containing protein YdiL |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base . (17/25); total (18/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.19e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.90e-01 | |||||||||||
CGTCAGTGGGAAAATGGCAAGTGTGCCATTCCTGATCGTGTAGTCGAGCAACTGTTGGCTATGCGTCAGCAAAGAAAAAAACATCTTCATGCCATCATAGAGAAAATAAATAACCGCATCGGCAACAACACCATGCGTTTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCCTGATGGCAATTTTATTGACTGGAAGATCTATCAATCGGTAGCTGCTGAATTATATGCACACGATCTGGAGCGGCTTTGTTAATTTTTCCACAGAAA > NC_000913/1770714‑1770985 | cGTCAGTGGGAAAATGGCAAGTGTGCCATTCCTGATCGTGTAGTCGAGCAACTGTTGGCTATGCGTCAGCAAAGAAAAAAACATCTTCATGCCATCATAGAGAAAATAAATAACCGCATCGGCAACAACACCATGCGttt > 2:100760/1‑140 (MQ=255) tCAGTGGGAAAATGGCAAGTGTGCCATTCCTGATCGTGTAGTCGAGCAACTGTTGGCTATGCGTCAGCAAAGAAAAAAACATCTTCATGCCATCATAGAGAAAATAAATAACCGCATCGGCAACAACACCATGCGttttt > 1:548022/1‑140 (MQ=255) gTGGGAAAATGGCAAGTGTGCCATTCCTGATCGTGTAGTCGAGCAACTGTTGGCTATGCGTCAGCAAAGAAAAAAACATCTTCATGCCATCATAGAGAAAATAAATAACCGCATCGGCAACAACACCATGCGTTTTTccc > 2:663435/1‑140 (MQ=255) gCCATTCCTGATCGTGTAGTCGAGCAACTGTTGGCTATGCGTCAGCAAAGAAAAAAACATCTTCATGCCATCATAGAGAAAATAAATAACCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCaa < 1:659671/140‑1 (MQ=255) gCCATTCCTGATCGTGTAGTCGAGCAACTGTTGGCTATGCGTCAGCAAAGAAAAAAACATCTTCATGCCATCATAGAGAAAATAAATAACCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCaa < 1:19322/140‑1 (MQ=255) ccATTCCTGATCGTGTAGTCGAGCAACTGTTGGCTATGCGTCAGCAAAGAAAAAAACATCTTCATGCCATCATAGAGAAAATAAATAACCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAAc < 2:19652/140‑1 (MQ=255) ccATTCCTGATCGTGTAGTCGAGCAACTGTTGGCTATGCGTCAGCAAAGAAAAAAACATCTTCATGCCATCATAGAGAAAATAAATAACCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAAc > 1:604746/1‑140 (MQ=255) cTGATCGTGTAGTCGAGCAACTGTTGGCTATGCGTCAGCAAAGAAAAAAACATCTTCATGCCATCATAGAGAAAATAAATAACCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCt > 1:495017/1‑140 (MQ=255) cTGATCGTGTAGTCGAGCAACTGTTGGCTATGCGTCAGCAAAGAAAAAAACATCTTCATGCCATCATAGAGAAAATAAATAACCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCt > 1:572759/1‑140 (MQ=255) gATCGTGTAGTCGAGCAACTGTTGGCTATGCGTCAGCAAAGAAAAAAACATCTTCATGCCATCATAGAGAAAATAAATAACCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCTAc > 2:40598/1‑140 (MQ=255) aTCGTGTAGTCGAGCAACTGTTGGCTATGCGTCAGCAAAGAAAAAAACATCTTCATGCCATCATAGAGAAAATAAATAACCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCTAcc > 2:21091/1‑140 (MQ=255) tgtAGTCGAGCAACTGTTGGCTATGCGTCAGCAAAGAAAAAAACATCTTCATGCCATCATAGAGAAAATAAATAACCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCCTGa > 1:538378/1‑140 (MQ=255) tgtAGTCGAGCAACTGTTGGCTATGCGTCAGCAAAGAAAAAAACATCTTCATGCCATCATAGAGAAAATAAATAACCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCCTGa > 1:646051/1‑140 (MQ=255) tAGTCGAGCAACTGTTGGCTATGCGTCAGCAAAGAAAAAAACATCTTCATGCCATCATAGAGAAAATAAATAACCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCCTGATg > 1:104207/1‑140 (MQ=255) aGTCGAGCAACTGTTGGCTATGCGTCAGCAAAGAAAAAAACATCTTCATGCCATCATAGAGAAAATAAATAACCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCCTGATgg > 1:405255/1‑140 (MQ=255) aGTCGAGCAACTGTTGGCTATGCGTCAGCAAAGAAAAAAACATCTTCATGCCATCATAGAGAAAATAAATAACCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCCTGATgg < 2:485002/140‑1 (MQ=255) aaCTGTTGGCTATGCGTCAGCAAAGAAAAAAACATCTTCATGCCATCATAGAGAAAATAAATAACCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCCTGATGGCAATTTTa < 2:604746/140‑1 (MQ=255) cTGTTGGCTATGCGTCAGCAAATAAAAAAACCTCTTCATACCATCATACAGAAAATAAATAACCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCCTGATGGCAATTTTAtt < 2:284995/140‑1 (MQ=255) cTGTTGGCTATGCGTCAGCAAAGAAAAAAACATCTTCATGCCATCATAGAGAAAATAAATAACCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCCTGATGGCAATTTTAtt < 2:439695/140‑1 (MQ=255) cTGTTGGCTATGCGTCAGCAAAGAAAAAAACATCTTCATGCCATCATAGAGAAAATAAATAACCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCCTGATGGCAATTTTAtt < 2:572759/140‑1 (MQ=255) cTGTTGGCTATGCGTCAGCAAAGAAAAAAACATCTTCATGCCATCATAGAGAAAATAAATAACCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCCTGATGGCAATTTTAtt < 1:100760/140‑1 (MQ=255) ttGGCTATGCGTCAGCAAAGAAAAAAACATCTTCATGCCATCATAGAGAAAATAAATAACCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCCTGATGGCAATTTTATTGAc < 2:466761/140‑1 (MQ=255) gCGTCAGCAAAGAAAAAAACATCTTCATGGCATCATAGAGAAAATAAATAACCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCCTGATGCCAATTTAATTGACTAGAAGAt > 2:77104/1‑140 (MQ=255) cAGCAAAGAAAAAAACATCTTCATGCCATCATAGAGAAAATAAATAACCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCCTGATGGCAATTTTATTGACTGGAAGATCTAt < 2:538378/140‑1 (MQ=255) aGCAAAGAAAAAAACATCTTCATGCCATCATAGAGAAAATAAATAACCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTTTACCCTGGTGGCAACTTTATTAACTGGAAGATCTATc > 1:319800/1‑140 (MQ=255) aGCAAAGAAAAAAACATCTTCATGCCATCATAGAGAAAATAAATAACCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCCTGATGGCAATTTTATTGACTGGAAGATCTATc > 2:641258/1‑140 (MQ=255) cAAAGAAAAAAACATCTTCATGTCACCATCGAGAAAACAAATAACCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCCTGATGGCAATTTTATTGACTGGAAGATCTATCaa < 1:183490/140‑1 (MQ=255) aaaaaaaCATCTTCATGCCATCATAGAGAAAATAAATAACCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCGTGATGGCGATTTTATTGACTGAAAGATCTATCAATCGGt > 2:183490/1‑140 (MQ=255) aaaaaaaCATCTTCATGCCATCATAGAGAAAATAAATAACCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCCTGATGGCAATTTTATTGACTGGAAGATCTATCAATCGGt < 2:43407/140‑1 (MQ=255) aaCATCTTCATGCCATCATAGAGAAAATAAATAACCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCCTGATGGCAATTTTATTGACTGGAAGATCTATCAATCGGTAgctg < 1:166073/140‑1 (MQ=255) aaCATCTTCATGCCATCATAGAGAAAATAAATAACCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCCTGATGGCAATTTTATTGACTGGAAGATCTATCAATCGGTAgctg < 2:405255/140‑1 (MQ=255) aCATCTTCATGCCATCATAGAGAAAATAAATAACCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCCTGATGGCAATTTTATTGACTGGAAGATCTATCAATCGGTAgctgc < 1:610761/140‑1 (MQ=255) cATCTTCATGCCATCATAGAGAAAATAAATAACCGCCTCGGCAACAACCCCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCCTGATGGCAATTTTATTGACTGGAAGATCTATCAATCGGTAgctgct < 1:470098/140‑1 (MQ=255) catAGAGAAAATAAATCGCCGCTTCGGCAACAACACCATCCG‑TTTTTCTCCGACTTAACCGCATTTCAACGAGTCTACCCTGATGGCAATTTTATTGACTGGAAGATCTATCAATCGGTAGCTGCTGAATTATATGcaca < 2:319800/140‑1 (MQ=255) catAGAGAAAATAAATAACCGCATCGGCAACAACATCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCCCGATGGCAATTTTATTGACTGGAAGATCTATCAATCGGTAGCTGCTGAATTATATGcaca < 2:495017/140‑1 (MQ=255) catAGAGAAAATAAATAACCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCCTGATGGCAATTTTATTGACTGGAAGATCTATCAATCGGTAGCTGCTGAATTATATGcaca > 1:490602/1‑140 (MQ=255) catAGAGAAAATAAATAACCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCCTGATGGCAATTTTATTGACTGGAAGATCTATCAATCGGTAGCTGCTGAATTATATGcaca < 2:116519/140‑1 (MQ=255) tAGAGAAAATAAATAACCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCCTGATGGCAATTTTATTGACTGGAAGATCTATCAATCGGTAGCTGCTGAATTATATGCACACg > 1:116310/1‑140 (MQ=255) aaaaTAAATAACCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCCTGATGGCAATTTTATTGACTGGAAGATCTATCAATCGGTAGCTGCTGAATtata < 2:640640/127‑1 (MQ=255) aaaaTAAATAACCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCCTGATGGCAATTTTATTGACTGGAAGATCTATCAATCGGTAGCTGCTGAATtata > 1:640640/1‑127 (MQ=255) aataaataACCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCCTGATGGCAATTTTATTGACTGGAAGATCTATCAATCGGTAGCTGCTGAATTATATGCACACGATCTGGa < 1:663435/140‑1 (MQ=255) aataaCCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCCTGATGGCAATTTTATTGACTGGAAGATCTATCAATCGGTAGCTGCTGAATTATATGCACACGATCTGGAGCgg < 1:500712/140‑1 (MQ=255) aCCGCATCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCCTGATGGCAATTTTATTGACTGGAAGATCTATCAATCGGTGGCTGCTGAATTATACGCACACGATCTGGAGCGGCttt > 1:260576/1‑140 (MQ=255) aTCGGCAACAACACCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCCTGATGGCAATTTTATTGACTGGAAGATCTATCAATCGGTAGCTGCTGAATTATATGCACACGATCTGGAGCGGCTTTGTTaa < 2:548022/140‑1 (MQ=255) caacaCCATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCCTGATGGCAATTTTATTGACTGGAAGATCTATCAATCGGTAGCTGCTGAATTATATGCACACGATCTGGAGCGGCTTTGTTAATTTTTCca < 2:283153/140‑1 (MQ=255) ccATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCCTGATGGCAATTTTATTGACTGGAAGATCTATCAATCGGTAGCTGCTGAATTATATGCACACGATCTGGAGCGGCTTTGTTAATTTTTCCACAGaa < 2:333180/140‑1 (MQ=255) cATGCG‑TTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCCTGATGGCAATTTTATTGACTGGAAGATCTATCAATCGGTAGCTGCTGAATTATATGCACAAGATCTGGAGCGGCTTTGTTAATTTTTCCACAGaaa > 2:271029/1‑140 (MQ=255) | CGTCAGTGGGAAAATGGCAAGTGTGCCATTCCTGATCGTGTAGTCGAGCAACTGTTGGCTATGCGTCAGCAAAGAAAAAAACATCTTCATGCCATCATAGAGAAAATAAATAACCGCATCGGCAACAACACCATGCGTTTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCCTGATGGCAATTTTATTGACTGGAAGATCTATCAATCGGTAGCTGCTGAATTATATGCACACGATCTGGAGCGGCTTTGTTAATTTTTCCACAGAAA > NC_000913/1770714‑1770985 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |