| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,858,955 | (C)5→4 | coding (1275/1380 nt) | ydjK ← | putative transporter YdjK |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,858,951 | 0 | C | . | 93.9% | 125.0 / 2.3 | 33 | coding (1279/1380 nt) | ydjK | putative transporter YdjK |
| Reads supporting (aligned to +/- strand): ref base C (2/0); new base . (20/11); total (22/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.42e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.65e-01 | |||||||||||
GCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCATAAGGTGCGGCAATACCACTGATTCGCCCTACCGCATTCGCCAGACCGGAGCCACGGAGTTTGGCCTCTGTCGGCCAGA > NC_000913/1858817‑1859088 | gCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGccccag < 1:362199/140‑3 (MQ=255) cTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGccccaga > 1:120661/1‑137 (MQ=255) cTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGccccaga < 2:343965/140‑4 (MQ=255) cTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGccccaga > 1:24735/1‑137 (MQ=255) cTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATAAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGccccaga < 2:113160/140‑4 (MQ=255) ttttGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGccccagaa < 2:77487/140‑5 (MQ=255) ttttGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGccccagaa < 2:608975/140‑5 (MQ=255) tttGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCG‑CCCCagaag > 1:98590/1‑140 (MQ=255) ttCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCG‑CCCCAGAAGAATAAAGAc < 1:531466/140‑1 (MQ=255) ccccGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGTTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCG‑CCCCAGAAGAATAAAGACTCCCGTAACGCCAt < 2:501568/139‑1 (MQ=255) cccGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAGACCG‑CCCGAGAAGACTAAAGAATCCCGTAACGCCATa > 1:212510/1‑140 (MQ=255) tattatTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCG‑CCCCAGAAGAATAAAGACTCCCGTAACGCCATAacta < 2:24735/140‑1 (MQ=255) tttattGGCTACTGCATCAATAGTTAAACTTTCAAAGGACACACCTTTTGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCG‑CCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGag < 2:214079/140‑1 (MQ=255) tattGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCG‑CCCCAGCAGAATAAAGACTCCTGTAACGCCATAACTACTGagca > 1:258008/1‑140 (MQ=255) tGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCG‑CCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAgcagca > 1:119836/1‑140 (MQ=255) tGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCG‑CCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAgcagca > 2:606384/1‑140 (MQ=255) tGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCG‑CCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAgcagca > 1:454451/1‑140 (MQ=255) ggCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCG‑CCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCAc < 2:485139/140‑1 (MQ=255) gCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCG‑CCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGag > 1:401563/1‑133 (MQ=255) gCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCG‑CCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGag < 2:401563/133‑1 (MQ=255) aCTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCG‑CCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCa < 1:33463/140‑1 (MQ=255) cAATATTTAAACTTTCAACGAAGGCTCTTTTGGTTTCGATTCAAATGGTGGCGATAGCATTGGCGACAAAAATTAAAACCG‑CCCCAGAAGAATAAAGCCTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCAt < 2:119836/140‑1 (MQ=255) aTACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCG‑CCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCATaa > 1:58960/1‑140 (MQ=255) tAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCG‑CCCCAGAAGAATAAAGAATCCCGTAAGGCCATAAGTACTGAGCTGCACAGCAACGGCATAAGGTGc > 2:191952/1‑140 (MQ=255) tCAATGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCG‑CCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCATAAGGTGCGGCAATa > 1:123233/1‑140 (MQ=255) tCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCG‑CCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCATAAGGTGCGGCAATa > 1:480781/1‑140 (MQ=255) tCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCG‑CCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCATAAGGTGCGGCAATa > 2:649296/1‑140 (MQ=255) cAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCG‑CCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCATAAGGTGCGGCAATAc > 1:489478/1‑140 (MQ=255) agaCACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCG‑CCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCATAAGGTGCGGCAATACCACTGa < 2:444906/140‑1 (MQ=255) agaCACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCG‑CCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCATAAGGTGCGGCAATACCACAGa > 2:409767/1‑140 (MQ=255) tGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCG‑CCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCATAAGGTGCGGCAATACCACTGATTCGCCCTa < 2:454451/140‑1 (MQ=255) ggTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCG‑CCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCATAAGGTGCGGCAATACCACTGATTCGCCCTAc > 1:388294/1‑140 (MQ=255) ggTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCG‑CCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCATAAGGTGCGGCAATACCACTGATTCGCCCTAc > 2:532046/1‑140 (MQ=255) tCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCG‑CCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCATAAGGTGCGGCAATACCACTGATTCGCCCTACCGCa > 2:431152/1‑140 (MQ=255) tCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCG‑CCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCATAAGGTGCGGCAATACCACTGATTCGCCCTACCGCa > 2:352493/1‑140 (MQ=255) gATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCG‑CCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCATAAGGTGCGGCAATACCACTGATTCGCCCTACCGCa > 2:492591/1‑138 (MQ=255) gATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCG‑CCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCATAAGGTGCGGCAATACCACTGATTCGCCCTACCGCa < 1:492591/138‑1 (MQ=255) gtggCGATAGCAATTGCGACAATAATTGAAACCG‑CCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCATAAGGTGCGGAAATACCACTGAATCACCCTACTGCATTCGCCAGACCg > 1:267222/1‑140 (MQ=255) gCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCATAAGGTGCGGCAATACCACTGATTCGCCCTACCGCATTCGCCAGACCGGa > 2:369620/1‑140 (MQ=255) cGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCATAAGGGGCGGCAATACCACTGATTCGCCCTACCGCATTCGCCATACCGGAGCCACGGAGATTGGCCTCTGTCGGCCAGa > 2:387142/1‑140 (MQ=255) | GCTTTTGAATTTTTCATTTTGAATCCACCCGTATTATTTATTGGCTACTGCATCAATACTTAAACTTTCAACGGAGACACCTTTGGTTTCGATTCCAATGGTGGCGATAGCAATTGCGACAATAATTGAAACCGCCCCCAGAAGAATAAAGACTCCCGTAACGCCATAACTACTGAGCAGCACTGCAACGGCATAAGGTGCGGCAATACCACTGATTCGCCCTACCGCATTCGCCAGACCGGAGCCACGGAGTTTGGCCTCTGTCGGCCAGA > NC_000913/1858817‑1859088 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |